pycom07g05380

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Reverse (-)
4652891 .. 4653133
243 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g05380.1

Sequence Viewer

Length: 243 bp
ATGATACAAGGTGGAGACATTTCGGCTGGAAATGGCAGTGGGGGAGAGTCAATTTACGGGTTGAAGTTTGAAGATGAAAATTTTGACATAAAGCATGAGAGAAAAGGAATGTTGTCTATGGCTAATAAAGGCCTTGACACCAATGGCTCTCAGTTTTTCATTACCACCACTTGGACTTCTCATCTGGATGGGAATTGCGTTTGGGAAGGTGATCAAGGGCATGGGTGTGGTTTGTTCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

81

Amino Acids

8.6

Weight (kDa)

4.66

Isoelectric Point (pI)

1.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 1 - 67 7.1e-16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 171
AcsI RAATTY 1 cut(s) 79
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 2 cut(s) 64, 71
Alw26I GTCTC 1 cut(s) 9
AoxI GGCC 1 cut(s) 130
ApoI RAATTY 1 cut(s) 79
AsuHPI GGTGA 1 cut(s) 221
BccI CCATC 1 cut(s) 182
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 1 cut(s) 9
Bsc4I CCNNNNNNNGG 1 cut(s) 171
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 164
BshFI GGCC 1 cut(s) 132
BslI CCNNNNNNNGG 1 cut(s) 171
BsmAI GTCTC 1 cut(s) 9
BsnI GGCC 1 cut(s) 132
Bsp143I GATC 1 cut(s) 211
BspANI GGCC 1 cut(s) 132
BspCNI CTCAG 1 cut(s) 163
BssMI GATC 1 cut(s) 211
BstDEI CTNAG 1 cut(s) 150
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 1 cut(s) 214
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 1 cut(s) 211
BsuRI GGCC 1 cut(s) 132
BtsCI GGATG 1 cut(s) 193
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 43
CviAII CATG 2 cut(s) 95, 221
CviJI RGCY 4 cut(s) 26, 122, 132, 147
CviKI_1 RGCY 4 cut(s) 26, 122, 132, 147
DdeI CTNAG 1 cut(s) 150
DpnI GATC 1 cut(s) 213
DpnII GATC 1 cut(s) 211
Eco147I AGGCCT 1 cut(s) 132
FaeI CATG 2 cut(s) 98, 224
FaiI YATR 4 cut(s) 89, 96, 119, 222
FatI CATG 2 cut(s) 94, 220
FbaI TGATCA 1 cut(s) 211
FokI GGATG 1 cut(s) 200
HaeIII GGCC 1 cut(s) 132
Hin1II CATG 2 cut(s) 98, 224
HinfI GANTC 1 cut(s) 47
HphI GGTGA 1 cut(s) 221
Hpy188III TCNNGA 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 200
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 2 cut(s) 98, 224
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 1 cut(s) 211
LpnPI CCDG 2 cut(s) 12, 170
MalI GATC 1 cut(s) 213
MboI GATC 1 cut(s) 211
MboII GAAGA 1 cut(s) 83
MluCI AATT 3 cut(s) 51, 79, 193
MlyI GAGTC 1 cut(s) 56
MslI CAYNNNNRTG 2 cut(s) 186, 225
NdeII GATC 1 cut(s) 211
NlaIII CATG 2 cut(s) 98, 224
PceI AGGCCT 1 cut(s) 132
PflMI CCANNNNNTGG 1 cut(s) 171
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
RseI CAYNNNNRTG 2 cut(s) 186, 225
Sau3AI GATC 1 cut(s) 211
SchI GAGTC 1 cut(s) 56
SetI ASST 2 cut(s) 13, 211
SgeI CNNG 9 cut(s) 20, 39, 70, 107, 146, 183, 197, 227, 233
SmiMI CAYNNNNRTG 2 cut(s) 186, 225
Sse9I AATT 3 cut(s) 51, 79, 193
SseBI AGGCCT 1 cut(s) 132
StuI AGGCCT 1 cut(s) 132
TasI AATT 3 cut(s) 51, 79, 193
TscAI CASTG 1 cut(s) 43
TspDTI ATGAA 2 cut(s) 90, 148
TspRI CASTG 1 cut(s) 43
Van91I CCANNNNNTGG 1 cut(s) 171
XapI RAATTY 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.