Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001652

Physical Location & Seq

Genomic Coordinates Reverse (-)

4162374 .. 4164923

Gene Structure 2550 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G13120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCGACCTTGTCGATGACTCTGTCAAATCCGAAGTCGCTCTCAGCTCCTCCACGAAGACTTTCTCCGATCAATACCTCCGCTTTCACATCTACCTCTTTCCGATTGCGCACCAAATCTTCCTTCGATTCAATCTCGTTCTCGTCTTCAACTCCCTTCTCCGCCTCATCGCTCCTCCTTCACACGTCTTATACCAAAAGAAACCACCGCTGTTTCTCTGTTCAATCCAATGCTGAGGTGGTTACTGAACCGCAATCGAAAATAACACACAAGGTGTATTTCGATATAAGTGTTGGCAATCCAGTGGGGAAGTTAGCTGGGAGGATTGTTATTGGATTGTATGGTGATGATGTTCCCCAAACTGTGGAGAACTTTCGTGCTCTATGCACAGGTGAAAAGGGATTTGGCTACAAGGGTTCTACATTCCATCGTGTCATCAGAGATTTCATGATTCAGGGAGGAGACTTTGAGAAGGGCAATGGAACTGGAGGTAAAAGTGTATATGGCCGTACATTCAAGGATGAGAATTTCAAGTTATCCCATGTCGGACCAGGAGTTCTAAGTATGGCAAATGCTGGCCCTAATACAAATGGAAGTCAGTTCTTTATCTGCACTATTAAGACGTCATGGTTGGACGGAAGACATGTGGTGTTCGGGCAAGTAATAGAAGGAATGGAAGTGGTGAAGCTGATAGAGGAACAAGAGACAGACAGAGGAGACCGTCCCAGAAAGAAAGTGGTGATAGCAGACTGTGGTCAACTTCCAATGTCTGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009533 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0010275 GO:0016020 GO:0016043 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0022607 GO:0031976 GO:0031977 GO:0031984 GO:0034357 GO:0034622 GO:0036211 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043424 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071704 GO:0071840 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

259

Amino Acids

28.31

Weight (kDa)

9.39

Isoelectric Point (pI)

31.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	100 - 252	1.8e-51	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13120 AT5G13120
fragaria_vesca	FvH4_4g23300
malus_domestica	MD13G1123100.v1.1 MD15G1288900.v1.1 MD16G1123800.v1.1
prunus_persica	Prupe.1G221800_v2.0.a1 Prupe.1G221800_v2.0.a1 Prupe.1G221800_v2.0.a1
pyrus_communis	pycom03g09380 pycom07g05330 pycom07g05380 pycom13g10750 pycom15g24270 pycom16g10580
rosa_chinensis	RchiOBHm_Chr4g0429661 RchiOBHm_Chr5g0043491 RchiOBHm_Chr5g0043561 RchiOBHm_Chr6g0254041 RchiOBHm_Chr7g0205991
rosa_laevigata	RLG00000007054
rosa_multiflora	Rmu_co8235611.1_g000001 Rmu_sc0006590.1_g000005 Rmu_sc0010349.1_g000005 Rmu_sc0024031.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433360 Rroxscaffold_2G00113860 Rroxscaffold_4G00286780 Rroxscaffold_5G00371340
rosa_rugosa	Rorug01G0354400 Rorug04G0237500
rosa_samantha	Rh1AG363000 Rh2AG208100 Rh2BG430300 Rh4AG293600 Rh4BG299400 Rh4CG315200 Rh4DG296500 Rh5AG191200 Rh5BG299100 Rh6CG120300 Rh6DG108100 Rh7AG305600 Rh7CG324700
rosa_wichuraiana	Rw2G028480 Rw4G025410 Rw5G017430 Rw6G019830 Rw7G028310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	626
Acc16I	TGCGCA	1 cut(s)	110
AccB7I	CCANNNNNTGG	1 cut(s)	364
AciI	CCGC	4 cut(s)	81, 162, 208, 251
AcoI	YGGCCR	1 cut(s)	505
AcsI	RAATTY	1 cut(s)	526
AcyI	GRCGYC	1 cut(s)	623
AdeI	CACNNNGTG	1 cut(s)	274
AfaI	GTAC	1 cut(s)	511
AfiI	CCNNNNNNNGG	1 cut(s)	364
AflIII	ACRYGT	2 cut(s)	183, 643
AgsI	TTSAA	5 cut(s)	132, 150, 224, 517, 532
AjiI	CACGTC	1 cut(s)	186
AjnI	CCWGG	1 cut(s)	550
AjuI	GAANNNNNNNTTGG	4 cut(s)	107, 139, 387, 419
AloI	GAACNNNNNNTCC	2 cut(s)	540, 572
AluBI	AGCT	4 cut(s)	47, 317, 688, 776
AluI	AGCT	4 cut(s)	47, 317, 688, 776
Alw21I	GWGCWC	1 cut(s)	382
Alw26I	GTCTC	3 cut(s)	456, 698, 711
AoxI	GGCC	2 cut(s)	505, 577
ApoI	RAATTY	1 cut(s)	526
ArsI	GACNNNNNNTTYG	2 cut(s)	20, 52
Asp700I	GAANNNNTTC	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	2 cut(s)	548, 578
AsuHPI	GGTGA	4 cut(s)	356, 404, 694, 751
AvaII	GGWCC	1 cut(s)	548
BbsI	GAAGAC	3 cut(s)	64, 138, 646
Bbv12I	GWGCWC	1 cut(s)	382
BbvCI	CCTCAGC	1 cut(s)	234
BccI	CCATC	1 cut(s)	435
BceAI	ACGGC	1 cut(s)	492
BciT130I	CCWGG	1 cut(s)	552
BcoDI	GTCTC	3 cut(s)	456, 698, 711
Bme1390I	CCNGG	1 cut(s)	552
Bme18I	GGWCC	1 cut(s)	548
BmgBI	CACGTC	1 cut(s)	186
BmgT120I	GGNCC	2 cut(s)	548, 578
BmrFI	CCNGG	1 cut(s)	552
BoxI	GACNNNNGTC	1 cut(s)	753
BpiI	GAAGAC	3 cut(s)	64, 138, 646
BpmI	CTGGAG	1 cut(s)	507
Bpu10I	CCTNAGC	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	623
BsaI	GGTCTC	1 cut(s)	711
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse1I	ACTGG	2 cut(s)	302, 490
Bse3DI	GCAATG	1 cut(s)	484
BseBI	CCWGG	1 cut(s)	552
BseGI	GGATG	1 cut(s)	526
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMI	GCAATG	1 cut(s)	484
BseMII	CTCAG	2 cut(s)	57, 225
BseNI	ACTGG	2 cut(s)	302, 490
BseRI	GAGGAG	4 cut(s)	39, 164, 474, 729
BseYI	CCCAGC	1 cut(s)	317
BsgI	GTGCAG	1 cut(s)	595
BshFI	GGCC	2 cut(s)	507, 579
BsiHKAI	GWGCWC	1 cut(s)	382
BslFI	GGGAC	1 cut(s)	708
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmAI	GTCTC	3 cut(s)	456, 698, 711
BsmFI	GGGAC	1 cut(s)	708
BsnI	GGCC	2 cut(s)	507, 579
Bso31I	GGTCTC	1 cut(s)	711
Bsp1286I	GDGCHC	1 cut(s)	382
Bsp143I	GATC	1 cut(s)	69
BspACI	CCGC	4 cut(s)	81, 162, 208, 251
BspANI	GGCC	2 cut(s)	507, 579
BspCNI	CTCAG	2 cut(s)	56, 226
BspHI	TCATGA	1 cut(s)	447
BspTNI	GGTCTC	1 cut(s)	711
BsrDI	GCAATG	1 cut(s)	484
BsrI	ACTGG	2 cut(s)	302, 490
BssMI	GATC	1 cut(s)	69
BssNI	GRCGYC	1 cut(s)	623
Bst2UI	CCWGG	1 cut(s)	552
Bst4CI	ACNGT	3 cut(s)	364, 722, 752
BstACI	GRCGYC	1 cut(s)	623
BstC8I	GCNNGC	1 cut(s)	577
BstDEI	CTNAG	3 cut(s)	43, 234, 560
BstF5I	GGATG	1 cut(s)	526
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	1 cut(s)	72
BstMAI	GTCTC	3 cut(s)	456, 698, 711
BstMBI	GATC	1 cut(s)	69
BstNI	CCWGG	1 cut(s)	552
BstNSI	RCATGY	1 cut(s)	647
BstPAI	GACNNNNGTC	1 cut(s)	753
BstSCI	CCNGG	1 cut(s)	550
BstV2I	GAAGAC	3 cut(s)	64, 138, 646
BsuRI	GGCC	2 cut(s)	507, 579
BtgZI	GCGATG	1 cut(s)	153
BtrI	CACGTC	1 cut(s)	186
BtsCI	GGATG	1 cut(s)	526
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	577
CciI	TCATGA	1 cut(s)	447
CfoI	GCGC	1 cut(s)	111
Cfr13I	GGNCC	2 cut(s)	548, 578
Csp6I	GTAC	1 cut(s)	510
CviAII	CATG	4 cut(s)	448, 542, 627, 644
CviJI	RGCY	7 cut(s)	47, 317, 408, 507, 579, 688, 776
CviKI_1	RGCY	7 cut(s)	47, 317, 408, 507, 579, 688, 776
CviQI	GTAC	1 cut(s)	510
DdeI	CTNAG	3 cut(s)	43, 234, 560
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
DraIII	CACNNNGTG	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	505
EciI	GGCGGA	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	711
Eco47I	GGWCC	1 cut(s)	548
EcoRII	CCWGG	1 cut(s)	550
FaeI	CATG	4 cut(s)	451, 545, 630, 647
FaqI	GGGAC	1 cut(s)	708
FatI	CATG	4 cut(s)	447, 541, 626, 643
FokI	GGATG	1 cut(s)	533
FspI	TGCGCA	1 cut(s)	110
GlaI	GCGC	1 cut(s)	110
GsaI	CCCAGC	1 cut(s)	321
GsuI	CTGGAG	1 cut(s)	507
HaeIII	GGCC	2 cut(s)	507, 579
HhaI	GCGC	1 cut(s)	111
Hin1I	GRCGYC	1 cut(s)	623
Hin1II	CATG	4 cut(s)	451, 545, 630, 647
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HincII	GTYRAC	1 cut(s)	758
HindII	GTYRAC	1 cut(s)	758
HindIII	AAGCTT	1 cut(s)	774
HinfI	GANTC	3 cut(s)	19, 128, 451
HphI	GGTGA	4 cut(s)	356, 404, 694, 751
Hpy166II	GTNNAC	1 cut(s)	758
Hpy188I	TCNGA	6 cut(s)	33, 69, 104, 440, 548, 772
Hpy188III	TCNNGA	1 cut(s)	448
Hpy8I	GTNNAC	1 cut(s)	758
HpyAV	CCTTC	5 cut(s)	133, 166, 188, 466, 662
HpyCH4III	ACNGT	3 cut(s)	364, 722, 752
HpyCH4IV	ACGT	2 cut(s)	185, 623
HpyCH4V	TGCA	2 cut(s)	387, 612
HpyF3I	CTNAG	3 cut(s)	43, 234, 560
HpySE526I	ACGT	2 cut(s)	185, 623
Hsp92I	GRCGYC	1 cut(s)	623
Hsp92II	CATG	4 cut(s)	451, 545, 630, 647
HspAI	GCGC	1 cut(s)	109
Kzo9I	GATC	1 cut(s)	69
LmnI	GCTCC	2 cut(s)	52, 177
LpnPI	CCDG	9 cut(s)	303, 315, 375, 440, 471, 537, 561, 564, 739
MaeII	ACGT	2 cut(s)	185, 623
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	4 cut(s)	69, 111, 138, 651
MhlI	GDGCHC	1 cut(s)	382
MluCI	AATT	1 cut(s)	526
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	2 cut(s)	526, 612
MroXI	GAANNNNTTC	1 cut(s)	61
MseI	TTAA	2 cut(s)	618, 778
MspA1I	CMGCKG	1 cut(s)	210
MspR9I	CCNGG	1 cut(s)	552
MvaI	CCWGG	1 cut(s)	552
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	4 cut(s)	451, 545, 630, 647
NsbI	TGCGCA	1 cut(s)	110
NspI	RCATGY	1 cut(s)	647
PagI	TCATGA	1 cut(s)	447
PciI	ACATGT	1 cut(s)	643
PdmI	GAANNNNTTC	1 cut(s)	61
PfeI	GAWTC	2 cut(s)	128, 451
PflFI	GACNNNGTC	2 cut(s)	10, 22
PflMI	CCANNNNNTGG	1 cut(s)	364
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
PscI	ACATGT	1 cut(s)	643
PshAI	GACNNNNGTC	1 cut(s)	753
Psp6I	CCWGG	1 cut(s)	550
PspFI	CCCAGC	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	550
PspPI	GGNCC	2 cut(s)	548, 578
PsyI	GACNNNGTC	2 cut(s)	10, 22
RsaI	GTAC	1 cut(s)	511
RsaNI	GTAC	1 cut(s)	510
SaqAI	TTAA	2 cut(s)	618, 778
Sau3AI	GATC	1 cut(s)	69
Sau96I	GGNCC	2 cut(s)	548, 578
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	552
SduI	GDGCHC	1 cut(s)	382
SinI	GGWCC	1 cut(s)	548
Sse9I	AATT	1 cut(s)	526
SsiI	CCGC	4 cut(s)	81, 162, 208, 251
StyD4I	CCNGG	1 cut(s)	550
TaaI	ACNGT	3 cut(s)	364, 722, 752
TaiI	ACGT	2 cut(s)	188, 626
TaqI	TCGA	4 cut(s)	14, 126, 257, 282
TasI	AATT	1 cut(s)	526
TfiI	GAWTC	2 cut(s)	128, 451
Tru1I	TTAA	2 cut(s)	618, 778
Tru9I	TTAA	2 cut(s)	618, 778
TscAI	CASTG	1 cut(s)	309
TspDTI	ATGAA	1 cut(s)	436
TspGWI	ACGGA	1 cut(s)	651
TspRI	CASTG	1 cut(s)	309
Tth111I	GACNNNGTC	2 cut(s)	10, 22
Van91I	CCANNNNNTGG	1 cut(s)	364
VpaK11BI	GGWCC	1 cut(s)	548
XapI	RAATTY	1 cut(s)	526
XceI	RCATGY	1 cut(s)	647
XcmI	CCANNNNNNNNNTGG	2 cut(s)	235, 733
XmnI	GAANNNNTTC	1 cut(s)	61
ZraI	GACGTC	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.