RchiOBHm_Chr5g0043561

Peptidylprolyl isomerase domain and WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0001652
Physical Location & Seq
Reverse (-)
38627746 .. 38630061
2316 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32185

Sequence Viewer

Length: 441 bp
ATGTGGGTACGGCAGGTCGCCCGAGTTCAAGCCTGGGGCCTTGAGGCGGGTTTGGGGGATATGTTGGGGGGAGGGAGAGAAAATCAAAGTGAAATATTTCTGTACACTCCACCCAATGTTATCCTCTTTGGAGATCCTTTAGGAGATGGTACTGGTGGCCAATCTATTTGGGGAAGGGAGTTTGAGGATGAATTTCACAAAAGTTTACGACATGATAGGCCTTTTAGTCTTTTATTGTATCAATGGCAAATGCTGGCCAAAACACAAATGGATCTCAGTTCTTTATCACCACAGAGGCTACTCCTTGGCTGGACAACAGTTTTTGGAAGAGTGATCAAGGGAATGGATGTGGTTCAGGCTATAGAAAAAGTAAAGACAAACAAGGATGACAAGCCCCACCAAGATGTGAAAATTTTAAATGTTACTGTCCCCAAGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000413 GO:0003002 GO:0003006 GO:0003674 GO:0003682 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008144 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009933 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010051 GO:0010073 GO:0010075 GO:0010082 GO:0010305 GO:0010338 GO:0010358 GO:0016018 GO:0016604 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019222 GO:0019538 GO:0022414 GO:0022622 GO:0031056 GO:0031060 GO:0031323 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0033218 GO:0036211 GO:0040008 GO:0042277 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048442 GO:0048443 GO:0048444 GO:0048447 GO:0048449 GO:0048453 GO:0048464 GO:0048466 GO:0048467 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048608 GO:0048638 GO:0048646 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071013 GO:0071704 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1902275 GO:1902494 GO:1905392 GO:1905393 GO:1990904 GO:2000026 GO:2000241 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase WD40

Protein Analysis

146

Amino Acids

16.51

Weight (kDa)

6.83

Isoelectric Point (pI)

36.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 39 - 143 2e-13 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 4
AciI CCGC 1 cut(s) 47
AclWI GGATC 2 cut(s) 128, 279
AcoI YGGCCR 2 cut(s) 157, 255
AcsI RAATTY 2 cut(s) 191, 411
AfaI GTAC 3 cut(s) 9, 104, 151
AfiI CCNNNNNNNGG 1 cut(s) 46
AgsI TTSAA 1 cut(s) 29
AjnI CCWGG 1 cut(s) 32
AlwI GGATC 2 cut(s) 128, 279
Ama87I CYCGRG 1 cut(s) 21
AoxI GGCC 4 cut(s) 37, 157, 218, 255
ApoI RAATTY 2 cut(s) 191, 411
Asp700I GAANNNNTTC 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 279
AvaI CYCGRG 1 cut(s) 21
BalI TGGCCA 2 cut(s) 159, 257
BccI CCATC 1 cut(s) 140
BceAI ACGGC 1 cut(s) 26
BciT130I CCWGG 1 cut(s) 34
BclI TGATCA 1 cut(s) 333
BfmI CTRYAG 1 cut(s) 360
BfuAI ACCTGC 1 cut(s) 4
Bme1390I CCNGG 1 cut(s) 34
BmeT110I CYCGRG 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 62
BsaJI CCNNGG 2 cut(s) 33, 304
Bsc4I CCNNNNNNNGG 1 cut(s) 46
Bse1I ACTGG 1 cut(s) 157
BseBI CCWGG 1 cut(s) 34
BseDI CCNNGG 2 cut(s) 33, 304
BseGI GGATG 3 cut(s) 193, 352, 391
BseLI CCNNNNNNNGG 1 cut(s) 46
BseMII CTCAG 1 cut(s) 289
BseNI ACTGG 1 cut(s) 157
BshFI GGCC 4 cut(s) 39, 159, 220, 257
BsiHKCI CYCGRG 1 cut(s) 21
BslFI GGGAC 1 cut(s) 413
BslI CCNNNNNNNGG 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 413
BsnI GGCC 4 cut(s) 39, 159, 220, 257
BsoBI CYCGRG 1 cut(s) 21
Bsp1407I TGTACA 1 cut(s) 102
Bsp143I GATC 3 cut(s) 133, 271, 333
BspACI CCGC 1 cut(s) 47
BspANI GGCC 4 cut(s) 39, 159, 220, 257
BspCNI CTCAG 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 38
BspMI ACCTGC 1 cut(s) 4
BspPI GGATC 2 cut(s) 128, 279
BsrGI TGTACA 1 cut(s) 102
BsrI ACTGG 1 cut(s) 157
BssECI CCNNGG 2 cut(s) 33, 304
BssMI GATC 3 cut(s) 133, 271, 333
BssT1I CCWWGG 1 cut(s) 304
Bst2UI CCWGG 1 cut(s) 34
Bst4CI ACNGT 2 cut(s) 319, 427
Bst6I CTCTTC 1 cut(s) 322
BstAUI TGTACA 1 cut(s) 102
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 275
BstF5I GGATG 3 cut(s) 193, 352, 391
BstKTI GATC 3 cut(s) 136, 274, 336
BstMBI GATC 3 cut(s) 133, 271, 333
BstNI CCWGG 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 32
BstSFI CTRYAG 1 cut(s) 360
BstX2I RGATCY 2 cut(s) 133, 271
BstYI RGATCY 2 cut(s) 133, 271
BsuRI GGCC 4 cut(s) 39, 159, 220, 257
BtsCI GGATG 3 cut(s) 193, 352, 391
BveI ACCTGC 1 cut(s) 4
Cac8I GCNNGC 1 cut(s) 255
Cfr13I GGNCC 1 cut(s) 37
Csp6I GTAC 3 cut(s) 8, 103, 150
CviAII CATG 1 cut(s) 212
CviJI RGCY 9 cut(s) 32, 39, 159, 220, 257, 298, 309, 359, 394
CviKI_1 RGCY 9 cut(s) 32, 39, 159, 220, 257, 298, 309, 359, 394
CviQI GTAC 3 cut(s) 8, 103, 150
DdeI CTNAG 1 cut(s) 275
DpnI GATC 3 cut(s) 135, 273, 335
DpnII GATC 3 cut(s) 133, 271, 333
DraI TTTAAA 1 cut(s) 417
EaeI YGGCCR 2 cut(s) 157, 255
Eam1104I CTCTTC 1 cut(s) 322
EarI CTCTTC 1 cut(s) 322
Eco130I CCWWGG 1 cut(s) 304
Eco147I AGGCCT 1 cut(s) 220
Eco88I CYCGRG 1 cut(s) 21
EcoO109I RGGNCCY 1 cut(s) 37
EcoRII CCWGG 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 304
ErhI CCWWGG 1 cut(s) 304
FaeI CATG 1 cut(s) 215
FaiI YATR 3 cut(s) 62, 213, 362
FaqI GGGAC 1 cut(s) 413
FatI CATG 1 cut(s) 211
FauI CCCGC 1 cut(s) 40
FbaI TGATCA 1 cut(s) 333
FokI GGATG 3 cut(s) 200, 359, 398
HaeIII GGCC 4 cut(s) 39, 159, 220, 257
Hin1II CATG 1 cut(s) 215
HphI GGTGA 1 cut(s) 279
Hpy166II GTNNAC 2 cut(s) 105, 206
Hpy8I GTNNAC 2 cut(s) 105, 206
HpyAV CCTTC 1 cut(s) 168
HpyCH4III ACNGT 2 cut(s) 319, 427
HpyF3I CTNAG 1 cut(s) 275
Hsp92II CATG 1 cut(s) 215
Ksp22I TGATCA 1 cut(s) 333
Kzo9I GATC 3 cut(s) 133, 271, 333
LpnPI CCDG 6 cut(s) 19, 46, 138, 239, 295, 341
MaeIII GTNAC 1 cut(s) 421
MalI GATC 3 cut(s) 135, 273, 335
MboI GATC 3 cut(s) 133, 271, 333
MboII GAAGA 1 cut(s) 339
MflI RGATCY 2 cut(s) 133, 271
MlsI TGGCCA 2 cut(s) 159, 257
MluCI AATT 2 cut(s) 191, 411
MluNI TGGCCA 2 cut(s) 159, 257
MnlI CCTC 5 cut(s) 37, 65, 134, 178, 288
Mox20I TGGCCA 2 cut(s) 159, 257
MroXI GAANNNNTTC 1 cut(s) 96
MscI TGGCCA 2 cut(s) 159, 257
MseI TTAA 2 cut(s) 416, 439
MslI CAYNNNNRTG 1 cut(s) 402
Msp20I TGGCCA 2 cut(s) 159, 257
MspR9I CCNGG 1 cut(s) 34
MvaI CCWGG 1 cut(s) 34
NdeII GATC 3 cut(s) 133, 271, 333
NlaIII CATG 1 cut(s) 215
NlaIV GGNNCC 1 cut(s) 38
PceI AGGCCT 1 cut(s) 220
PdmI GAANNNNTTC 1 cut(s) 96
Psp6I CCWGG 1 cut(s) 32
PspGI CCWGG 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 38
PspPI GGNCC 1 cut(s) 37
PsuI RGATCY 2 cut(s) 133, 271
RsaI GTAC 3 cut(s) 9, 104, 151
RsaNI GTAC 3 cut(s) 8, 103, 150
RseI CAYNNNNRTG 1 cut(s) 402
SaqAI TTAA 2 cut(s) 416, 439
Sau3AI GATC 3 cut(s) 133, 271, 333
Sau96I GGNCC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 34
SetI ASST 1 cut(s) 18
SfcI CTRYAG 1 cut(s) 360
SmiMI CAYNNNNRTG 1 cut(s) 402
SmlI CTYRAG 1 cut(s) 41
SmoI CTYRAG 1 cut(s) 41
Sse9I AATT 2 cut(s) 191, 411
SseBI AGGCCT 1 cut(s) 220
SsiI CCGC 1 cut(s) 47
SspI AATATT 1 cut(s) 96
StuI AGGCCT 1 cut(s) 220
StyD4I CCNGG 1 cut(s) 32
StyI CCWWGG 1 cut(s) 304
TaaI ACNGT 2 cut(s) 319, 427
TasI AATT 2 cut(s) 191, 411
TatI WGTACW 1 cut(s) 102
Tru1I TTAA 2 cut(s) 416, 439
Tru9I TTAA 2 cut(s) 416, 439
TspDTI ATGAA 1 cut(s) 204
XapI RAATTY 2 cut(s) 191, 411
XcmI CCANNNNNNNNNTGG 1 cut(s) 265
XmnI GAANNNNTTC 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.