Rroxscaffold_180G00433360

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000180
OG0001652
Physical Location & Seq
Forward (+)
232045 .. 234595
2551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_180G00433360.1

Sequence Viewer

Length: 579 bp
ATGATTTTCTGGGTTTCAGCTATTTATGATCTTTTGAAAACTGGAGTTATGATTTTCAGGGTTCCTTTCTTTCTTTCTGCTGGGTTTTGGATCTTGGCTATTTGGCTATATATCAAATTTGCTTTCACTGTGGAGAATTTATGTTCCCTTTGCACAGGTGAGAAAGGCTTTGGGTACAAGGGTTCTGCCTTCCATCGTGTGATCAAGGATTTCATGATTCAAGGAGGGGACTTCGATAAGGGCAATGTGGGTGCTTTTCCGTTCTTTCAAGATTCATGGGTACTGGAGGCAAAAGCATTTATGGGCGTACTGCGTACATTTAAAGATGAGAACTTTAAGTTGCTTCATACTGGACCAGGAGTTCTTAGCATGGCAAATGCAGGCCCCAATACCAATGGAAGTCAGTTCTTCATATGCACAGTACAGACGCCATGGCTAAATGGGAGGCACGTTGTGTTTGGGCAAGTTTTGGAAGGCATGGAAATTGTTAGGCTGATCGAGTCGCAGGAGACAGATAGAGGTGACCGTCCTACAAAGAAGGTAGTCATTGCTGACTGCGGAGAGCTTCCAGTAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

192

Amino Acids

21.5

Weight (kDa)

6.82

Isoelectric Point (pI)

19.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 42 - 187 3.4e-41 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 558
AclWI GGATC 1 cut(s) 98
AcsI RAATTY 2 cut(s) 116, 136
AcyI GRCGYC 1 cut(s) 428
AdeI CACNNNGTG 1 cut(s) 454
AfaI GTAC 5 cut(s) 176, 282, 309, 316, 423
AgsI TTSAA 3 cut(s) 37, 221, 269
AjnI CCWGG 1 cut(s) 355
AloI GAACNNNNNNTCC 2 cut(s) 345, 377
AluBI AGCT 2 cut(s) 20, 565
AluI AGCT 2 cut(s) 20, 565
Alw26I GTCTC 1 cut(s) 503
AlwI GGATC 1 cut(s) 98
AoxI GGCC 1 cut(s) 382
ApoI RAATTY 2 cut(s) 116, 136
AspS9I GGNCC 2 cut(s) 353, 383
AsuHPI GGTGA 2 cut(s) 170, 533
AvaII GGWCC 1 cut(s) 353
BaeI ACNNNNGTAYC 2 cut(s) 166, 199
BccI CCATC 1 cut(s) 201
BciT130I CCWGG 1 cut(s) 357
BclI TGATCA 1 cut(s) 201
BcoDI GTCTC 1 cut(s) 503
Bme1390I CCNGG 1 cut(s) 357
Bme18I GGWCC 1 cut(s) 353
BmgT120I GGNCC 2 cut(s) 353, 383
BmiI GGNNCC 2 cut(s) 63, 385
BmrFI CCNGG 1 cut(s) 357
BpmI CTGGAG 2 cut(s) 63, 305
BsaHI GRCGYC 1 cut(s) 428
BsaJI CCNNGG 1 cut(s) 431
Bse1I ACTGG 4 cut(s) 46, 288, 355, 569
Bse3DI GCAATG 2 cut(s) 250, 546
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 1 cut(s) 431
BseMI GCAATG 2 cut(s) 250, 546
BseNI ACTGG 4 cut(s) 46, 288, 355, 569
BseYI CCCAGC 1 cut(s) 80
BshFI GGCC 1 cut(s) 384
BslFI GGGAC 1 cut(s) 242
BsmAI GTCTC 1 cut(s) 503
BsmFI GGGAC 1 cut(s) 242
BsnI GGCC 1 cut(s) 384
Bsp143I GATC 4 cut(s) 28, 90, 201, 495
Bsp19I CCATGG 1 cut(s) 431
BspACI CCGC 1 cut(s) 558
BspANI GGCC 1 cut(s) 384
BspHI TCATGA 1 cut(s) 213
BspLI GGNNCC 2 cut(s) 63, 385
BspPI GGATC 1 cut(s) 98
BsrDI GCAATG 2 cut(s) 250, 546
BsrI ACTGG 4 cut(s) 46, 288, 355, 569
BssECI CCNNGG 1 cut(s) 431
BssMI GATC 4 cut(s) 28, 90, 201, 495
BssNI GRCGYC 1 cut(s) 428
BssT1I CCWWGG 1 cut(s) 431
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 3 cut(s) 130, 421, 527
BstACI GRCGYC 1 cut(s) 428
BstC8I GCNNGC 1 cut(s) 382
BstDEI CTNAG 1 cut(s) 365
BstDSI CCRYGG 1 cut(s) 431
BstEII GGTNACC 1 cut(s) 521
BstKTI GATC 4 cut(s) 31, 93, 204, 498
BstMAI GTCTC 1 cut(s) 503
BstMBI GATC 4 cut(s) 28, 90, 201, 495
BstNI CCWGG 1 cut(s) 357
BstPI GGTNACC 1 cut(s) 521
BstSCI CCNGG 1 cut(s) 355
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BsuRI GGCC 1 cut(s) 384
BtgI CCRYGG 1 cut(s) 431
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 382
CciI TCATGA 1 cut(s) 213
Cfr13I GGNCC 2 cut(s) 353, 383
CseI GACGC 1 cut(s) 436
Csp6I GTAC 5 cut(s) 175, 281, 308, 315, 422
CviAII CATG 5 cut(s) 214, 276, 370, 432, 478
CviJI RGCY 9 cut(s) 20, 98, 106, 168, 384, 436, 493, 565, 575
CviKI_1 RGCY 9 cut(s) 20, 98, 106, 168, 384, 436, 493, 565, 575
CviQI GTAC 5 cut(s) 175, 281, 308, 315, 422
DdeI CTNAG 1 cut(s) 365
DpnI GATC 4 cut(s) 30, 92, 203, 497
DpnII GATC 4 cut(s) 28, 90, 201, 495
DraI TTTAAA 1 cut(s) 322
DraIII CACNNNGTG 1 cut(s) 454
Eco130I CCWWGG 1 cut(s) 431
Eco47I GGWCC 1 cut(s) 353
Eco91I GGTNACC 1 cut(s) 521
EcoO109I RGGNCCY 1 cut(s) 383
EcoO65I GGTNACC 1 cut(s) 521
EcoRII CCWGG 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 431
ErhI CCWWGG 1 cut(s) 431
FaeI CATG 5 cut(s) 217, 279, 373, 435, 481
FaqI GGGAC 1 cut(s) 242
FatI CATG 5 cut(s) 213, 275, 369, 431, 477
FauNDI CATATG 1 cut(s) 413
FbaI TGATCA 1 cut(s) 201
GsaI CCCAGC 1 cut(s) 84
GsuI CTGGAG 2 cut(s) 63, 305
HaeIII GGCC 1 cut(s) 384
HgaI GACGC 1 cut(s) 436
Hin1I GRCGYC 1 cut(s) 428
Hin1II CATG 5 cut(s) 217, 279, 373, 435, 481
HinfI GANTC 3 cut(s) 217, 272, 500
HphI GGTGA 2 cut(s) 170, 533
Hpy188III TCNNGA 2 cut(s) 214, 269
HpyAV CCTTC 3 cut(s) 199, 467, 532
HpyCH4III ACNGT 3 cut(s) 130, 421, 527
HpyCH4IV ACGT 1 cut(s) 450
HpyCH4V TGCA 3 cut(s) 153, 380, 417
HpyF3I CTNAG 1 cut(s) 365
HpySE526I ACGT 1 cut(s) 450
Hsp92I GRCGYC 1 cut(s) 428
Hsp92II CATG 5 cut(s) 217, 279, 373, 435, 481
Ksp22I TGATCA 1 cut(s) 201
Kzo9I GATC 4 cut(s) 28, 90, 201, 495
MaeII ACGT 1 cut(s) 450
MaeIII GTNAC 1 cut(s) 521
MalI GATC 4 cut(s) 30, 92, 203, 497
MboI GATC 4 cut(s) 28, 90, 201, 495
MboII GAAGA 1 cut(s) 400
MflI RGATCY 1 cut(s) 90
MluCI AATT 3 cut(s) 116, 136, 483
MlyI GAGTC 1 cut(s) 509
MnlI CCTC 4 cut(s) 218, 280, 438, 512
MseI TTAA 2 cut(s) 321, 336
MspR9I CCNGG 1 cut(s) 357
MvaI CCWGG 1 cut(s) 357
NcoI CCATGG 1 cut(s) 431
NdeI CATATG 1 cut(s) 413
NdeII GATC 4 cut(s) 28, 90, 201, 495
NlaIII CATG 5 cut(s) 217, 279, 373, 435, 481
NlaIV GGNNCC 2 cut(s) 63, 385
NmuCI GTSAC 1 cut(s) 521
PagI TCATGA 1 cut(s) 213
PfeI GAWTC 2 cut(s) 217, 272
PleI GAGTC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 508
Psp6I CCWGG 1 cut(s) 355
PspEI GGTNACC 1 cut(s) 521
PspFI CCCAGC 1 cut(s) 80
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 2 cut(s) 63, 385
PspPI GGNCC 2 cut(s) 353, 383
PsuI RGATCY 1 cut(s) 90
RsaI GTAC 5 cut(s) 176, 282, 309, 316, 423
RsaNI GTAC 5 cut(s) 175, 281, 308, 315, 422
SaqAI TTAA 2 cut(s) 321, 336
Sau3AI GATC 4 cut(s) 28, 90, 201, 495
Sau96I GGNCC 2 cut(s) 353, 383
SchI GAGTC 1 cut(s) 509
ScrFI CCNGG 1 cut(s) 357
SetI ASST 6 cut(s) 22, 160, 453, 523, 543, 567
SinI GGWCC 1 cut(s) 353
Sse9I AATT 3 cut(s) 116, 136, 483
SsiI CCGC 1 cut(s) 558
StyD4I CCNGG 1 cut(s) 355
StyI CCWWGG 1 cut(s) 431
TaaI ACNGT 3 cut(s) 130, 421, 527
TaiI ACGT 1 cut(s) 453
TaqI TCGA 2 cut(s) 234, 498
TasI AATT 3 cut(s) 116, 136, 483
TatI WGTACW 1 cut(s) 421
TfiI GAWTC 2 cut(s) 217, 272
Tru1I TTAA 2 cut(s) 321, 336
Tru9I TTAA 2 cut(s) 321, 336
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 1 cut(s) 521
Tsp45I GTSAC 1 cut(s) 521
TspDTI ATGAA 4 cut(s) 202, 264, 335, 400
TspGWI ACGGA 1 cut(s) 249
TspRI CASTG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 353
XapI RAATTY 2 cut(s) 116, 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.