Rroxscaffold_5G00371340

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0001652
Physical Location & Seq
Forward (+)
52928143 .. 52931116
2974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00371340.1

Sequence Viewer

Length: 774 bp
ATGGCAGCTTCTTTGTCAAATGTTGCATCGCTTCCGGGCTCTGTGAGCGTGTCTCAGATTAGAGCTTTGGCCCCTCCGTGTAACTCATCCGCGGTTGCAGCATTTCCGTCTTCTTCTTCCGCCAAAACGGCGCCGTTGTCGTCGTCCAGCTTCTTCTCCAGGTCGCTGCGTTTGTCCCCCCTCACATTGAGCCCTAGCTCGAAGAGAAGGACTGTTAGCTCGGTCCGTGCCAGCGCTGAGGAACCAGCATTGCAGGCGAAAGTGACCAACAAGGTGTATTTTGATATTAGCATTGGTAATCCGGTAGGGAAGCTGGCCGGAAGGATTGTGATTGGATTGTTTGGTGATGATGTGCCCCAAACTGTGGAGAATTTCCGTTCCCTTTGCACAGGTGAGAAAGGCTTTGGGTACAAGGGCTCTGCGTTCCATCGTGTGATCAAGGATTTCATGATTCAAGGAGGGGACTTTGATAAGGGCAATGGTACTGGAGGCAAAAGCATTTATGGGCGTACATTTAAAGATGAGAACTTTAAGTTGCTTCACACTGGACCAGGAGTTCTTAGCATGGCGAATGCAGGCCCCAATACCAATGGAAGTCAGTTCTTCATATGCACAGTACAGACGCCATGGCTAAATGGGAGGCACGTTGTGTTTGGGCAAGTTTTGGAAGGCATGGAAATTGTTAGGCTGATCGAGTCGCAGGAGACAGATAGAGGTGACCGTCCTACAAAGAAGGTAGTCATTGCTGACAGTGGAGAGCTTCCAGTAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

257

Amino Acids

27.19

Weight (kDa)

9.57

Isoelectric Point (pI)

39.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 100 - 251 1e-50 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 130
AccB7I CCANNNNNTGG 1 cut(s) 364
AccII CGCG 1 cut(s) 92
AciI CCGC 3 cut(s) 90, 92, 120
AcoI YGGCCR 1 cut(s) 315
AcsI RAATTY 1 cut(s) 370
AcyI GRCGYC 2 cut(s) 131, 623
AdeI CACNNNGTG 1 cut(s) 649
AfaI GTAC 4 cut(s) 410, 484, 511, 618
AfeI AGCGCT 1 cut(s) 235
AfiI CCNNNNNNNGG 1 cut(s) 364
AgsI TTSAA 1 cut(s) 455
AjnI CCWGG 2 cut(s) 158, 550
AloI GAACNNNNNNTCC 2 cut(s) 540, 572
AluBI AGCT 7 cut(s) 8, 65, 150, 198, 219, 313, 760
AluI AGCT 7 cut(s) 8, 65, 150, 198, 219, 313, 760
Alw26I GTCTC 2 cut(s) 57, 698
Aor51HI AGCGCT 1 cut(s) 235
AoxI GGCC 3 cut(s) 69, 315, 577
ApeKI GCWGC 3 cut(s) 5, 98, 166
ApoI RAATTY 1 cut(s) 370
AspLEI GCGC 2 cut(s) 133, 236
AspS9I GGNCC 4 cut(s) 70, 223, 548, 578
AsuC2I CCSGG 1 cut(s) 36
AsuHPI GGTGA 3 cut(s) 356, 404, 728
AvaII GGWCC 2 cut(s) 223, 548
BaeGI GKGCMC 1 cut(s) 357
BanI GGYRCC 1 cut(s) 130
BanII GRGCYC 3 cut(s) 41, 194, 419
BbsI GAAGAC 1 cut(s) 102
BbvCI CCTCAGC 1 cut(s) 237
BbvI GCAGC 3 cut(s) 17, 110, 153
BccI CCATC 1 cut(s) 435
BceAI ACGGC 2 cut(s) 118, 144
BciT130I CCWGG 2 cut(s) 160, 552
BclI TGATCA 1 cut(s) 435
BcnI CCSGG 1 cut(s) 36
BcoDI GTCTC 2 cut(s) 57, 698
BfaI CTAG 1 cut(s) 195
BfoI RGCGCY 2 cut(s) 134, 237
BglI GCCNNNNNGGC 1 cut(s) 128
BisI GCNGC 3 cut(s) 6, 99, 167
BlsI GCNGC 3 cut(s) 7, 100, 168
Bme1390I CCNGG 3 cut(s) 36, 160, 552
Bme18I GGWCC 2 cut(s) 223, 548
BmgT120I GGNCC 4 cut(s) 70, 223, 548, 578
BmiI GGNNCC 4 cut(s) 72, 132, 243, 580
BmrFI CCNGG 3 cut(s) 36, 160, 552
BmsI GCATC 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 102
BplI GAGNNNNNCTC 2 cut(s) 37, 69
BpmI CTGGAG 2 cut(s) 142, 507
Bpu10I CCTNAGC 1 cut(s) 237
BpuMI CCSGG 1 cut(s) 36
BsaHI GRCGYC 2 cut(s) 131, 623
BsaJI CCNNGG 2 cut(s) 90, 626
BsaWI WCCGGW 1 cut(s) 301
Bsc4I CCNNNNNNNGG 1 cut(s) 364
Bse1I ACTGG 3 cut(s) 490, 550, 764
Bse3DI GCAATG 3 cut(s) 248, 484, 741
BseBI CCWGG 2 cut(s) 160, 552
BseDI CCNNGG 2 cut(s) 90, 626
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 1 cut(s) 364
BseMI GCAATG 3 cut(s) 248, 484, 741
BseMII CTCAG 2 cut(s) 68, 228
BseNI ACTGG 3 cut(s) 490, 550, 764
BseSI GKGCMC 1 cut(s) 357
BseXI GCAGC 3 cut(s) 17, 110, 153
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 3 cut(s) 71, 317, 579
BshNI GGYRCC 1 cut(s) 130
BsiSI CCGG 3 cut(s) 35, 302, 318
BslFI GGGAC 2 cut(s) 160, 476
BslI CCNNNNNNNGG 1 cut(s) 364
BsmAI GTCTC 2 cut(s) 57, 698
BsmFI GGGAC 2 cut(s) 160, 476
BsmI GAATGC 1 cut(s) 577
BsnI GGCC 3 cut(s) 71, 317, 579
Bsp1286I GDGCHC 4 cut(s) 41, 194, 357, 419
Bsp143I GATC 2 cut(s) 435, 690
Bsp19I CCATGG 1 cut(s) 626
BspACI CCGC 3 cut(s) 90, 92, 120
BspANI GGCC 3 cut(s) 71, 317, 579
BspCNI CTCAG 2 cut(s) 67, 229
BspFNI CGCG 1 cut(s) 92
BspHI TCATGA 1 cut(s) 447
BspLI GGNNCC 4 cut(s) 72, 132, 243, 580
BspT107I GGYRCC 1 cut(s) 130
BsrDI GCAATG 3 cut(s) 248, 484, 741
BsrI ACTGG 3 cut(s) 490, 550, 764
BssECI CCNNGG 2 cut(s) 90, 626
BssMI GATC 2 cut(s) 435, 690
BssNI GRCGYC 2 cut(s) 131, 623
BssT1I CCWWGG 1 cut(s) 626
Bst2UI CCWGG 2 cut(s) 160, 552
Bst4CI ACNGT 5 cut(s) 214, 364, 616, 722, 752
Bst6I CTCTTC 1 cut(s) 197
BstACI GRCGYC 2 cut(s) 131, 623
BstC8I GCNNGC 4 cut(s) 232, 255, 315, 577
BstDEI CTNAG 3 cut(s) 54, 237, 560
BstDSI CCRYGG 2 cut(s) 90, 626
BstEII GGTNACC 1 cut(s) 716
BstF5I GGATG 1 cut(s) 86
BstFNI CGCG 1 cut(s) 92
BstH2I RGCGCY 2 cut(s) 134, 237
BstHHI GCGC 2 cut(s) 133, 236
BstKTI GATC 2 cut(s) 438, 693
BstMAI GTCTC 2 cut(s) 57, 698
BstMBI GATC 2 cut(s) 435, 690
BstMWI GCNNNNNNNGC 4 cut(s) 45, 98, 128, 254
BstNI CCWGG 2 cut(s) 160, 552
BstPI GGTNACC 1 cut(s) 716
BstSCI CCNGG 3 cut(s) 34, 158, 550
BstSLI GKGCMC 1 cut(s) 357
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 3 cut(s) 17, 110, 153
BstV2I GAAGAC 1 cut(s) 102
BsuRI GGCC 3 cut(s) 71, 317, 579
BtgI CCRYGG 2 cut(s) 90, 626
BtgZI GCGATG 1 cut(s) 12
BtsCI GGATG 1 cut(s) 86
BtsIMutI CAGTG 2 cut(s) 543, 757
Cac8I GCNNGC 4 cut(s) 232, 255, 315, 577
CciI TCATGA 1 cut(s) 447
CfoI GCGC 2 cut(s) 133, 236
Cfr13I GGNCC 4 cut(s) 70, 223, 548, 578
Cfr42I CCGCGG 1 cut(s) 93
CpoI CGGWCCG 1 cut(s) 223
CseI GACGC 1 cut(s) 631
Csp6I GTAC 4 cut(s) 409, 483, 510, 617
CspI CGGWCCG 1 cut(s) 223
CviAII CATG 4 cut(s) 448, 565, 627, 673
CviQI GTAC 4 cut(s) 409, 483, 510, 617
DdeI CTNAG 3 cut(s) 54, 237, 560
DinI GGCGCC 1 cut(s) 132
DpnI GATC 2 cut(s) 437, 692
DpnII GATC 2 cut(s) 435, 690
DraI TTTAAA 1 cut(s) 517
DraIII CACNNNGTG 1 cut(s) 649
EaeI YGGCCR 1 cut(s) 315
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
EciI GGCGGA 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 626
Eco24I GRGCYC 3 cut(s) 41, 194, 419
Eco47I GGWCC 2 cut(s) 223, 548
Eco47III AGCGCT 1 cut(s) 235
Eco91I GGTNACC 1 cut(s) 716
EcoO109I RGGNCCY 1 cut(s) 578
EcoO65I GGTNACC 1 cut(s) 716
EcoRII CCWGG 2 cut(s) 158, 550
EcoT14I CCWWGG 1 cut(s) 626
EcoT38I GRGCYC 3 cut(s) 41, 194, 419
EgeI GGCGCC 1 cut(s) 132
EheI GGCGCC 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 626
FaeI CATG 4 cut(s) 451, 568, 630, 676
FaiI YATR 7 cut(s) 449, 504, 566, 608, 610, 628, 674
FaqI GGGAC 2 cut(s) 160, 476
FatI CATG 4 cut(s) 447, 564, 626, 672
FauNDI CATATG 1 cut(s) 608
FbaI TGATCA 1 cut(s) 435
Fnu4HI GCNGC 3 cut(s) 6, 99, 167
FokI GGATG 1 cut(s) 73
FriOI GRGCYC 3 cut(s) 41, 194, 419
Fsp4HI GCNGC 3 cut(s) 6, 99, 167
FspBI CTAG 1 cut(s) 195
GlaI GCGC 2 cut(s) 132, 235
GluI GCNGC 3 cut(s) 6, 99, 167
GsuI CTGGAG 2 cut(s) 142, 507
HaeII RGCGCY 2 cut(s) 134, 237
HaeIII GGCC 3 cut(s) 71, 317, 579
HapII CCGG 3 cut(s) 35, 302, 318
HgaI GACGC 1 cut(s) 631
HhaI GCGC 2 cut(s) 133, 236
Hin1I GRCGYC 2 cut(s) 131, 623
Hin1II CATG 4 cut(s) 451, 568, 630, 676
Hin6I GCGC 2 cut(s) 131, 234
HinP1I GCGC 2 cut(s) 131, 234
HinfI GANTC 2 cut(s) 451, 695
HpaII CCGG 3 cut(s) 35, 302, 318
HphI GGTGA 3 cut(s) 356, 404, 728
Hpy188I TCNGA 1 cut(s) 57
Hpy188III TCNNGA 1 cut(s) 448
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 4 cut(s) 201, 315, 662, 727
HpyCH4III ACNGT 5 cut(s) 214, 364, 616, 722, 752
HpyCH4IV ACGT 1 cut(s) 645
HpyCH4V TGCA 6 cut(s) 26, 98, 253, 387, 575, 612
HpyF10VI GCNNNNNNNGC 4 cut(s) 45, 98, 128, 254
HpyF3I CTNAG 3 cut(s) 54, 237, 560
HpySE526I ACGT 1 cut(s) 645
Hsp92I GRCGYC 2 cut(s) 131, 623
Hsp92II CATG 4 cut(s) 451, 568, 630, 676
HspAI GCGC 2 cut(s) 131, 234
KasI GGCGCC 1 cut(s) 130
Ksp22I TGATCA 1 cut(s) 435
KspI CCGCGG 1 cut(s) 93
Kzo9I GATC 2 cut(s) 435, 690
Lsp1109I GCAGC 3 cut(s) 17, 110, 153
LweI GCATC 1 cut(s) 35
MaeI CTAG 1 cut(s) 195
MaeII ACGT 1 cut(s) 645
MaeIII GTNAC 3 cut(s) 80, 262, 716
MalI GATC 2 cut(s) 437, 692
MboI GATC 2 cut(s) 435, 690
MboII GAAGA 6 cut(s) 102, 105, 108, 145, 214, 595
MhlI GDGCHC 4 cut(s) 41, 194, 357, 419
MluCI AATT 2 cut(s) 370, 678
Mly113I GGCGCC 1 cut(s) 131
MlyI GAGTC 1 cut(s) 704
MnlI CCTC 7 cut(s) 84, 191, 232, 452, 482, 633, 707
MseI TTAA 2 cut(s) 516, 531
MspA1I CMGCKG 1 cut(s) 92
MspI CCGG 3 cut(s) 35, 302, 318
MspR9I CCNGG 3 cut(s) 36, 160, 552
Mva1269I GAATGC 1 cut(s) 577
MvaI CCWGG 2 cut(s) 160, 552
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 4 cut(s) 45, 98, 128, 254
NarI GGCGCC 1 cut(s) 131
NciI CCSGG 1 cut(s) 36
NcoI CCATGG 1 cut(s) 626
NdeI CATATG 1 cut(s) 608
NdeII GATC 2 cut(s) 435, 690
NlaIII CATG 4 cut(s) 451, 568, 630, 676
NlaIV GGNNCC 4 cut(s) 72, 132, 243, 580
NmuCI GTSAC 2 cut(s) 262, 716
PagI TCATGA 1 cut(s) 447
PctI GAATGC 1 cut(s) 577
PfeI GAWTC 1 cut(s) 451
PflMI CCANNNNNTGG 1 cut(s) 364
PkrI GCNGC 3 cut(s) 7, 100, 168
PleI GAGTC 1 cut(s) 703
PluTI GGCGCC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 703
Psp6I CCWGG 2 cut(s) 158, 550
PspEI GGTNACC 1 cut(s) 716
PspGI CCWGG 2 cut(s) 158, 550
PspN4I GGNNCC 4 cut(s) 72, 132, 243, 580
PspPI GGNCC 4 cut(s) 70, 223, 548, 578
RsaI GTAC 4 cut(s) 410, 484, 511, 618
RsaNI GTAC 4 cut(s) 409, 483, 510, 617
Rsr2I CGGWCCG 1 cut(s) 223
RsrII CGGWCCG 1 cut(s) 223
SacII CCGCGG 1 cut(s) 93
SaqAI TTAA 2 cut(s) 516, 531
SatI GCNGC 3 cut(s) 6, 99, 167
Sau3AI GATC 2 cut(s) 435, 690
Sau96I GGNCC 4 cut(s) 70, 223, 548, 578
SchI GAGTC 1 cut(s) 704
ScrFI CCNGG 3 cut(s) 36, 160, 552
SduI GDGCHC 4 cut(s) 41, 194, 357, 419
SfaNI GCATC 1 cut(s) 35
SfoI GGCGCC 1 cut(s) 132
Sfr303I CCGCGG 1 cut(s) 93
SgrBI CCGCGG 1 cut(s) 93
SinI GGWCC 2 cut(s) 223, 548
Sse9I AATT 2 cut(s) 370, 678
SsiI CCGC 3 cut(s) 90, 92, 120
SspDI GGCGCC 1 cut(s) 130
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 3 cut(s) 34, 158, 550
StyI CCWWGG 1 cut(s) 626
TaaI ACNGT 5 cut(s) 214, 364, 616, 722, 752
TaiI ACGT 1 cut(s) 648
TaqI TCGA 2 cut(s) 200, 693
TaqII GACCGA 1 cut(s) 211
TasI AATT 2 cut(s) 370, 678
TatI WGTACW 1 cut(s) 616
TfiI GAWTC 1 cut(s) 451
Tru1I TTAA 2 cut(s) 516, 531
Tru9I TTAA 2 cut(s) 516, 531
TscAI CASTG 2 cut(s) 550, 757
TseFI GTSAC 2 cut(s) 262, 716
TseI GCWGC 3 cut(s) 5, 98, 166
Tsp45I GTSAC 2 cut(s) 262, 716
TspDTI ATGAA 2 cut(s) 436, 595
TspGWI ACGGA 4 cut(s) 66, 96, 215, 365
TspRI CASTG 2 cut(s) 550, 757
Van91I CCANNNNNTGG 1 cut(s) 364
VpaK11BI GGWCC 2 cut(s) 223, 548
XapI RAATTY 1 cut(s) 370
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.