Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0001652

Physical Location & Seq

Genomic Coordinates Reverse (-)

14020946 .. 14035693

Gene Structure 14748 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG108100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAGATCCGGATTCCAACAAGCAAATTTGCTTTCACTGTGGAGAATTTCCGTTCCCTTTGCACAGGTGAGAAAGGCTTTGGGTACAAGGGTTCTGCCTTCCATCGTGTGATCAAGGATTTCATGATTCAAGGAGGGGACTTCGATAAGGGCAATGGTACTGGAGGCAAAAGCATTTATGGGCGTACATTTAAAGATGAGAACTTTAAGTTGCTTCATACTGGACCAGGAGTTCTTAGCATGGCAAATGCAGGCCCCAATACCAATGGAAGTCAATTCTTCATATGCACAGTACAGACGCCATGGCTAAATGGGAGGCACGTTGTGTTTAGGCAAGTTTTGGAAGGCATGGAAATTGTTAGGCTGATCGAGTCGCAGGAGACAGATAGAGGACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

132

Amino Acids

14.71

Weight (kDa)

9.03

Isoelectric Point (pI)

14.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	2 - 130	2.4e-39	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13120 AT5G13120
fragaria_vesca	FvH4_4g23300
malus_domestica	MD13G1123100.v1.1 MD15G1288900.v1.1 MD16G1123800.v1.1
prunus_persica	Prupe.1G221800_v2.0.a1 Prupe.1G221800_v2.0.a1 Prupe.1G221800_v2.0.a1
pyrus_communis	pycom03g09380 pycom07g05330 pycom07g05380 pycom13g10750 pycom15g24270 pycom16g10580
rosa_chinensis	RchiOBHm_Chr4g0429661 RchiOBHm_Chr5g0043491 RchiOBHm_Chr5g0043561 RchiOBHm_Chr6g0254041 RchiOBHm_Chr7g0205991
rosa_laevigata	RLG00000007054
rosa_multiflora	Rmu_co8235611.1_g000001 Rmu_sc0006590.1_g000005 Rmu_sc0010349.1_g000005 Rmu_sc0024031.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433360 Rroxscaffold_2G00113860 Rroxscaffold_4G00286780 Rroxscaffold_5G00371340
rosa_rugosa	Rorug01G0354400 Rorug04G0237500
rosa_samantha	Rh1AG363000 Rh2AG208100 Rh2BG430300 Rh4AG293600 Rh4BG299400 Rh4CG315200 Rh4DG296500 Rh5AG191200 Rh5BG299100 Rh6CG120300 Rh6DG108100 Rh7AG305600 Rh7CG324700
rosa_wichuraiana	Rw2G028480 Rw4G025410 Rw5G017430 Rw6G019830 Rw7G028310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	9
AcsI	RAATTY	2 cut(s)	26, 46
AcyI	GRCGYC	1 cut(s)	299
AdeI	CACNNNGTG	1 cut(s)	325
AfaI	GTAC	4 cut(s)	86, 160, 187, 294
AgsI	TTSAA	1 cut(s)	131
AjnI	CCWGG	1 cut(s)	226
AloI	GAACNNNNNNTCC	2 cut(s)	216, 248
Alw26I	GTCTC	1 cut(s)	374
Aor13HI	TCCGGA	1 cut(s)	9
AoxI	GGCC	1 cut(s)	253
ApoI	RAATTY	2 cut(s)	26, 46
AspS9I	GGNCC	2 cut(s)	224, 254
AsuHPI	GGTGA	1 cut(s)	80
AvaII	GGWCC	1 cut(s)	224
BaeI	ACNNNNGTAYC	2 cut(s)	76, 109
BccI	CCATC	1 cut(s)	111
BciT130I	CCWGG	1 cut(s)	228
BclI	TGATCA	1 cut(s)	111
BcoDI	GTCTC	1 cut(s)	374
Bme1390I	CCNGG	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	2 cut(s)	224, 254
BmiI	GGNNCC	1 cut(s)	256
BmrFI	CCNGG	1 cut(s)	228
BpmI	CTGGAG	1 cut(s)	183
BsaHI	GRCGYC	1 cut(s)	299
BsaJI	CCNNGG	1 cut(s)	302
BsaWI	WCCGGW	1 cut(s)	9
Bse1I	ACTGG	2 cut(s)	166, 226
Bse3DI	GCAATG	1 cut(s)	160
BseAI	TCCGGA	1 cut(s)	9
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	302
BseMI	GCAATG	1 cut(s)	160
BseNI	ACTGG	2 cut(s)	166, 226
BshFI	GGCC	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	10
BslFI	GGGAC	1 cut(s)	152
BsmAI	GTCTC	1 cut(s)	374
BsmFI	GGGAC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	255
Bsp13I	TCCGGA	1 cut(s)	9
Bsp143I	GATC	3 cut(s)	6, 111, 366
Bsp19I	CCATGG	1 cut(s)	302
BspANI	GGCC	1 cut(s)	255
BspEI	TCCGGA	1 cut(s)	9
BspHI	TCATGA	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	256
BsrDI	GCAATG	1 cut(s)	160
BsrI	ACTGG	2 cut(s)	166, 226
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	3 cut(s)	6, 111, 366
BssNI	GRCGYC	1 cut(s)	299
BssT1I	CCWWGG	1 cut(s)	302
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	2 cut(s)	40, 292
BstACI	GRCGYC	1 cut(s)	299
BstC8I	GCNNGC	1 cut(s)	253
BstDEI	CTNAG	1 cut(s)	236
BstDSI	CCRYGG	1 cut(s)	302
BstKTI	GATC	3 cut(s)	9, 114, 369
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	3 cut(s)	6, 111, 366
BstNI	CCWGG	1 cut(s)	228
BstSCI	CCNGG	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BsuRI	GGCC	1 cut(s)	255
BtgI	CCRYGG	1 cut(s)	302
BtsIMutI	CAGTG	1 cut(s)	36
Cac8I	GCNNGC	1 cut(s)	253
CciI	TCATGA	1 cut(s)	123
Cfr13I	GGNCC	2 cut(s)	224, 254
CseI	GACGC	1 cut(s)	307
Csp6I	GTAC	4 cut(s)	85, 159, 186, 293
CviAII	CATG	4 cut(s)	124, 241, 303, 349
CviJI	RGCY	4 cut(s)	78, 255, 307, 364
CviKI_1	RGCY	4 cut(s)	78, 255, 307, 364
CviQI	GTAC	4 cut(s)	85, 159, 186, 293
DdeI	CTNAG	1 cut(s)	236
DpnI	GATC	3 cut(s)	8, 113, 368
DpnII	GATC	3 cut(s)	6, 111, 366
DraI	TTTAAA	1 cut(s)	193
DraIII	CACNNNGTG	1 cut(s)	325
Eco130I	CCWWGG	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	224
EcoO109I	RGGNCCY	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	226
EcoT14I	CCWWGG	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	302
FaeI	CATG	4 cut(s)	127, 244, 306, 352
FaiI	YATR	8 cut(s)	125, 180, 219, 242, 284, 286, 304, 350
FaqI	GGGAC	1 cut(s)	152
FatI	CATG	4 cut(s)	123, 240, 302, 348
FauNDI	CATATG	1 cut(s)	284
FbaI	TGATCA	1 cut(s)	111
GsuI	CTGGAG	1 cut(s)	183
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	1 cut(s)	10
HgaI	GACGC	1 cut(s)	307
Hin1I	GRCGYC	1 cut(s)	299
Hin1II	CATG	4 cut(s)	127, 244, 306, 352
HinfI	GANTC	3 cut(s)	13, 127, 371
HpaII	CCGG	1 cut(s)	10
HphI	GGTGA	1 cut(s)	80
Hpy188III	TCNNGA	2 cut(s)	10, 124
HpyAV	CCTTC	2 cut(s)	109, 338
HpyCH4III	ACNGT	2 cut(s)	40, 292
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	3 cut(s)	63, 251, 288
HpyF3I	CTNAG	1 cut(s)	236
HpySE526I	ACGT	1 cut(s)	321
Hsp92I	GRCGYC	1 cut(s)	299
Hsp92II	CATG	4 cut(s)	127, 244, 306, 352
Kpn2I	TCCGGA	1 cut(s)	9
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	3 cut(s)	6, 111, 366
LpnPI	CCDG	8 cut(s)	23, 51, 147, 207, 213, 237, 240, 362
MaeII	ACGT	1 cut(s)	321
MalI	GATC	3 cut(s)	8, 113, 368
MboI	GATC	3 cut(s)	6, 111, 366
MboII	GAAGA	1 cut(s)	271
MflI	RGATCY	1 cut(s)	6
MluCI	AATT	4 cut(s)	26, 46, 275, 354
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	4 cut(s)	128, 158, 309, 383
MroI	TCCGGA	1 cut(s)	9
MseI	TTAA	2 cut(s)	192, 207
MspI	CCGG	1 cut(s)	10
MspR9I	CCNGG	1 cut(s)	228
MvaI	CCWGG	1 cut(s)	228
NcoI	CCATGG	1 cut(s)	302
NdeI	CATATG	1 cut(s)	284
NdeII	GATC	3 cut(s)	6, 111, 366
NlaIII	CATG	4 cut(s)	127, 244, 306, 352
NlaIV	GGNNCC	1 cut(s)	256
PagI	TCATGA	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	13, 127
PleI	GAGTC	1 cut(s)	379
PpsI	GAGTC	1 cut(s)	379
Psp6I	CCWGG	1 cut(s)	226
PspGI	CCWGG	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	256
PspPI	GGNCC	2 cut(s)	224, 254
PsuI	RGATCY	1 cut(s)	6
RsaI	GTAC	4 cut(s)	86, 160, 187, 294
RsaNI	GTAC	4 cut(s)	85, 159, 186, 293
SaqAI	TTAA	2 cut(s)	192, 207
Sau3AI	GATC	3 cut(s)	6, 111, 366
Sau96I	GGNCC	2 cut(s)	224, 254
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	228
SetI	ASST	2 cut(s)	70, 324
SinI	GGWCC	1 cut(s)	224
Sse9I	AATT	4 cut(s)	26, 46, 275, 354
StyD4I	CCNGG	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	2 cut(s)	40, 292
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	2 cut(s)	144, 369
TasI	AATT	4 cut(s)	26, 46, 275, 354
TatI	WGTACW	1 cut(s)	292
TfiI	GAWTC	2 cut(s)	13, 127
Tru1I	TTAA	2 cut(s)	192, 207
Tru9I	TTAA	2 cut(s)	192, 207
TscAI	CASTG	1 cut(s)	43
TspDTI	ATGAA	3 cut(s)	112, 206, 271
TspGWI	ACGGA	1 cut(s)	41
TspRI	CASTG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	224
XapI	RAATTY	2 cut(s)	26, 46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.