Rroxscaffold_2G00113860

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001652
Physical Location & Seq
Reverse (-)
39633021 .. 39637281
4261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00113860.1

Sequence Viewer

Length: 303 bp
ATGGTACTGGAGGCAAAAGCATTTATGGGCGTACTGCGTACATTTAAAGATGAGAACTTTAAGTTGCTTCATACTGGACCAGGAGTTCTTAGCATGGCAAATGCAGGCCCCAATACCAATGGAAGTCAGTTCTTCATATGCACAGTACAGACGCCATGGCTAAATGGGAGGCACGTTGTGTTTGGGCAAGTTTTGGAAGGCATGGAAATTGTTAGGCTGATCGAGTCGCAGGAGACAGATAGAGGTGACCGTCCTACAAAGAAGGTAGTCATTGCTGACTGCGGAGAGCTTCCAGTAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

100

Amino Acids

10.97

Weight (kDa)

6.07

Isoelectric Point (pI)

20.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 13 - 95 3.9e-28 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 282
AcyI GRCGYC 1 cut(s) 152
AdeI CACNNNGTG 1 cut(s) 178
AfaI GTAC 4 cut(s) 6, 33, 40, 147
AjnI CCWGG 1 cut(s) 79
AloI GAACNNNNNNTCC 2 cut(s) 69, 101
AluBI AGCT 1 cut(s) 289
AluI AGCT 1 cut(s) 289
Alw26I GTCTC 1 cut(s) 227
AoxI GGCC 1 cut(s) 106
AspS9I GGNCC 2 cut(s) 77, 107
AsuHPI GGTGA 1 cut(s) 257
AvaII GGWCC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 81
BcoDI GTCTC 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 81
Bme18I GGWCC 1 cut(s) 77
BmgT120I GGNCC 2 cut(s) 77, 107
BmiI GGNNCC 1 cut(s) 109
BmrFI CCNGG 1 cut(s) 81
BpmI CTGGAG 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 152
BsaJI CCNNGG 1 cut(s) 155
Bse1I ACTGG 3 cut(s) 12, 79, 293
Bse3DI GCAATG 1 cut(s) 270
BseBI CCWGG 1 cut(s) 81
BseDI CCNNGG 1 cut(s) 155
BseMI GCAATG 1 cut(s) 270
BseNI ACTGG 3 cut(s) 12, 79, 293
BshFI GGCC 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 227
BsnI GGCC 1 cut(s) 108
Bsp143I GATC 1 cut(s) 219
Bsp19I CCATGG 1 cut(s) 155
BspACI CCGC 1 cut(s) 282
BspANI GGCC 1 cut(s) 108
BspLI GGNNCC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 270
BsrI ACTGG 3 cut(s) 12, 79, 293
BssECI CCNNGG 1 cut(s) 155
BssMI GATC 1 cut(s) 219
BssNI GRCGYC 1 cut(s) 152
BssT1I CCWWGG 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 81
Bst4CI ACNGT 2 cut(s) 145, 251
BstACI GRCGYC 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 89
BstDSI CCRYGG 1 cut(s) 155
BstEII GGTNACC 1 cut(s) 245
BstKTI GATC 1 cut(s) 222
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 1 cut(s) 219
BstNI CCWGG 1 cut(s) 81
BstPI GGTNACC 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 79
BsuRI GGCC 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 155
Cac8I GCNNGC 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 77, 107
CseI GACGC 1 cut(s) 160
Csp6I GTAC 4 cut(s) 5, 32, 39, 146
CviAII CATG 3 cut(s) 94, 156, 202
CviJI RGCY 5 cut(s) 108, 160, 217, 289, 299
CviKI_1 RGCY 5 cut(s) 108, 160, 217, 289, 299
CviQI GTAC 4 cut(s) 5, 32, 39, 146
DdeI CTNAG 1 cut(s) 89
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
DraI TTTAAA 1 cut(s) 46
DraIII CACNNNGTG 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 77
Eco91I GGTNACC 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 107
EcoO65I GGTNACC 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 155
ErhI CCWWGG 1 cut(s) 155
FaeI CATG 3 cut(s) 97, 159, 205
FaiI YATR 7 cut(s) 26, 72, 95, 137, 139, 157, 203
FatI CATG 3 cut(s) 93, 155, 201
FauNDI CATATG 1 cut(s) 137
GsuI CTGGAG 1 cut(s) 29
HaeIII GGCC 1 cut(s) 108
HgaI GACGC 1 cut(s) 160
Hin1I GRCGYC 1 cut(s) 152
Hin1II CATG 3 cut(s) 97, 159, 205
HinfI GANTC 1 cut(s) 224
HphI GGTGA 1 cut(s) 257
HpyAV CCTTC 2 cut(s) 191, 256
HpyCH4III ACNGT 2 cut(s) 145, 251
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 2 cut(s) 104, 141
HpyF3I CTNAG 1 cut(s) 89
HpySE526I ACGT 1 cut(s) 174
Hsp92I GRCGYC 1 cut(s) 152
Hsp92II CATG 3 cut(s) 97, 159, 205
Kzo9I GATC 1 cut(s) 219
LpnPI CCDG 5 cut(s) 60, 66, 90, 93, 215
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 245
MalI GATC 1 cut(s) 221
MboI GATC 1 cut(s) 219
MboII GAAGA 1 cut(s) 124
MluCI AATT 1 cut(s) 207
MlyI GAGTC 1 cut(s) 233
MnlI CCTC 3 cut(s) 4, 162, 236
MseI TTAA 2 cut(s) 45, 60
MspR9I CCNGG 1 cut(s) 81
MvaI CCWGG 1 cut(s) 81
NcoI CCATGG 1 cut(s) 155
NdeI CATATG 1 cut(s) 137
NdeII GATC 1 cut(s) 219
NlaIII CATG 3 cut(s) 97, 159, 205
NlaIV GGNNCC 1 cut(s) 109
NmuCI GTSAC 1 cut(s) 245
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 79
PspEI GGTNACC 1 cut(s) 245
PspGI CCWGG 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 109
PspPI GGNCC 2 cut(s) 77, 107
RsaI GTAC 4 cut(s) 6, 33, 40, 147
RsaNI GTAC 4 cut(s) 5, 32, 39, 146
SaqAI TTAA 2 cut(s) 45, 60
Sau3AI GATC 1 cut(s) 219
Sau96I GGNCC 2 cut(s) 77, 107
SchI GAGTC 1 cut(s) 233
ScrFI CCNGG 1 cut(s) 81
SetI ASST 4 cut(s) 177, 247, 267, 291
SinI GGWCC 1 cut(s) 77
Sse9I AATT 1 cut(s) 207
SsiI CCGC 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 79
StyI CCWWGG 1 cut(s) 155
TaaI ACNGT 2 cut(s) 145, 251
TaiI ACGT 1 cut(s) 177
TaqI TCGA 1 cut(s) 222
TasI AATT 1 cut(s) 207
TatI WGTACW 1 cut(s) 145
Tru1I TTAA 2 cut(s) 45, 60
Tru9I TTAA 2 cut(s) 45, 60
TseFI GTSAC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 2 cut(s) 59, 124
VpaK11BI GGWCC 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.