pycom03g09380

Peptidylprolyl isomerase domain and WD repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0001652
Physical Location & Seq
Forward (+)
7892245 .. 7892819
575 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g09380.2

Sequence Viewer

Length: 207 bp
ATGGCAAATGCGGGAGAAAACACAAATGGATCTCAGTTCTTTATCACCACAGTGGCAACTCCTTGGCTTGACAACAAGCACACAGTTTTTGGCAGAGTTATCAAGGGGATGGATGTTGTGCAGGCTATAGAAAAAGTGAAGACGGACAGGGGAGAAAGGCCCCAAGTAGACGTGAAAATTCTGAATGTTACTGTCCCCAAGCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000413 GO:0003002 GO:0003006 GO:0003674 GO:0003682 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008144 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009933 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010051 GO:0010073 GO:0010075 GO:0010082 GO:0010305 GO:0010338 GO:0010358 GO:0016018 GO:0016604 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019222 GO:0019538 GO:0022414 GO:0022622 GO:0031056 GO:0031060 GO:0031323 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0033218 GO:0036211 GO:0040008 GO:0042277 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048442 GO:0048443 GO:0048444 GO:0048447 GO:0048449 GO:0048453 GO:0048464 GO:0048466 GO:0048467 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048608 GO:0048638 GO:0048646 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071013 GO:0071704 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1902275 GO:1902494 GO:1905392 GO:1905393 GO:1990904 GO:2000026 GO:2000241 GO:2000280
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase WD40

Protein Analysis

69

Amino Acids

7.51

Weight (kDa)

9.3

Isoelectric Point (pI)

13.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 168
AciI CCGC 1 cut(s) 11
AclWI GGATC 1 cut(s) 37
AcsI RAATTY 1 cut(s) 177
AjiI CACGTC 1 cut(s) 172
AleI CACNNNNGTG 1 cut(s) 50
AlwI GGATC 1 cut(s) 37
AoxI GGCC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 177
AspS9I GGNCC 1 cut(s) 159
AsuHPI GGTGA 1 cut(s) 37
BbsI GAAGAC 1 cut(s) 146
BccI CCATC 1 cut(s) 103
BfmI CTRYAG 1 cut(s) 126
BmgBI CACGTC 1 cut(s) 172
BmgT120I GGNCC 1 cut(s) 159
BmiI GGNNCC 1 cut(s) 161
BpiI GAAGAC 1 cut(s) 146
BsaJI CCNNGG 1 cut(s) 62
BseDI CCNNGG 1 cut(s) 62
BseGI GGATG 2 cut(s) 114, 118
BseMII CTCAG 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 140
BshFI GGCC 1 cut(s) 160
BslFI GGGAC 1 cut(s) 179
BsmFI GGGAC 1 cut(s) 179
BsnI GGCC 1 cut(s) 160
Bsp143I GATC 1 cut(s) 29
BspACI CCGC 1 cut(s) 11
BspANI GGCC 1 cut(s) 160
BspCNI CTCAG 1 cut(s) 46
BspLI GGNNCC 1 cut(s) 161
BspPI GGATC 1 cut(s) 37
BssECI CCNNGG 1 cut(s) 62
BssMI GATC 1 cut(s) 29
BssT1I CCWWGG 1 cut(s) 62
Bst4CI ACNGT 3 cut(s) 52, 85, 193
BstC8I GCNNGC 1 cut(s) 123
BstDEI CTNAG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 114, 118
BstKTI GATC 1 cut(s) 32
BstMBI GATC 1 cut(s) 29
BstSFI CTRYAG 1 cut(s) 126
BstV2I GAAGAC 1 cut(s) 146
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
BsuRI GGCC 1 cut(s) 160
BtrI CACGTC 1 cut(s) 172
BtsCI GGATG 2 cut(s) 114, 118
BtsIMutI CAGTG 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 123
Cfr13I GGNCC 1 cut(s) 159
CviJI RGCY 4 cut(s) 67, 125, 160, 202
CviKI_1 RGCY 4 cut(s) 67, 125, 160, 202
DdeI CTNAG 1 cut(s) 33
DpnI GATC 1 cut(s) 31
DpnII GATC 1 cut(s) 29
Eco130I CCWWGG 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 159
EcoT14I CCWWGG 1 cut(s) 62
ErhI CCWWGG 1 cut(s) 62
FaiI YATR 1 cut(s) 128
FaqI GGGAC 1 cut(s) 179
FauI CCCGC 1 cut(s) 4
FblI GTMKAC 1 cut(s) 168
FokI GGATG 2 cut(s) 121, 125
HaeIII GGCC 1 cut(s) 160
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 1 cut(s) 183
Hpy8I GTNNAC 1 cut(s) 169
HpyCH4III ACNGT 3 cut(s) 52, 85, 193
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 1 cut(s) 121
HpyF3I CTNAG 1 cut(s) 33
HpySE526I ACGT 1 cut(s) 171
Kzo9I GATC 1 cut(s) 29
LpnPI CCDG 2 cut(s) 107, 133
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 1 cut(s) 187
MalI GATC 1 cut(s) 31
MboI GATC 1 cut(s) 29
MboII GAAGA 1 cut(s) 151
MflI RGATCY 1 cut(s) 29
MluCI AATT 1 cut(s) 177
MseI TTAA 1 cut(s) 205
MslI CAYNNNNRTG 1 cut(s) 50
NdeII GATC 1 cut(s) 29
NlaIV GGNNCC 1 cut(s) 161
OliI CACNNNNGTG 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 161
PspPI GGNCC 1 cut(s) 159
PsuI RGATCY 1 cut(s) 29
RseI CAYNNNNRTG 1 cut(s) 50
SaqAI TTAA 1 cut(s) 205
Sau3AI GATC 1 cut(s) 29
Sau96I GGNCC 1 cut(s) 159
SetI ASST 1 cut(s) 174
SfcI CTRYAG 1 cut(s) 126
SgeI CNNG 9 cut(s) 24, 75, 80, 88, 115, 134, 160, 176, 184
SmiMI CAYNNNNRTG 1 cut(s) 50
Sse9I AATT 1 cut(s) 177
SsiI CCGC 1 cut(s) 11
StyI CCWWGG 1 cut(s) 62
TaaI ACNGT 3 cut(s) 52, 85, 193
TaiI ACGT 1 cut(s) 174
TasI AATT 1 cut(s) 177
Tru1I TTAA 1 cut(s) 205
Tru9I TTAA 1 cut(s) 205
TscAI CASTG 1 cut(s) 57
TspGWI ACGGA 1 cut(s) 158
TspRI CASTG 1 cut(s) 57
XapI RAATTY 1 cut(s) 177
XmiI GTMKAC 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.