Rh4AG293600

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001652
Physical Location & Seq
Forward (+)
60707605 .. 60709989
2385 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG293600.1

Sequence Viewer

Length: 393 bp
ATGGCAGCTTCTTTGTCAAATGTTGCATCGCTTCCGGGCTGTGTGAGCGTGTCTCAGATTAGAGCTTTGGCCCCTCCGTGTAACTCATCCGCGGTAGCAGCATTTCCGTCTTCTTCTTCCGCCAAAACGGCGCCGTTGTCGTCGTCCAGCTTCTTCTCCAGGTCGCTGCGTTTGTCCCCCCTCACATTGAGCCCTAGCTCGAAGAGAAGGACTGTTAGCTCGGTCCGTGCCAGCGCTGAGACGCCATGGCTAAATGGGAGGCACGTTGTGTTTGGGCAAGTTTTGGAAGGCATAGAAATTGTTAGGCTGATCGAGTCGCAGGAGACAGATAGAGGTGACCGTCCTACAAAGAAGGTAGTCATTGCTGAATGCGGAGAGCTTCCAGTAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

130

Amino Acids

13.61

Weight (kDa)

9.74

Isoelectric Point (pI)

71.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 79 - 125 3.1e-11 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 130
AccII CGCG 1 cut(s) 92
AciI CCGC 4 cut(s) 90, 92, 120, 372
AcyI GRCGYC 2 cut(s) 131, 242
AdeI CACNNNGTG 1 cut(s) 268
AfeI AGCGCT 1 cut(s) 235
AjnI CCWGG 1 cut(s) 158
AluBI AGCT 6 cut(s) 8, 65, 150, 198, 219, 379
AluI AGCT 6 cut(s) 8, 65, 150, 198, 219, 379
Alw26I GTCTC 3 cut(s) 57, 233, 317
Aor51HI AGCGCT 1 cut(s) 235
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 3 cut(s) 5, 98, 166
AspLEI GCGC 2 cut(s) 133, 236
AspS9I GGNCC 2 cut(s) 70, 223
AsuC2I CCSGG 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 347
AvaII GGWCC 1 cut(s) 223
BanI GGYRCC 1 cut(s) 130
BanII GRGCYC 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 102
BbvI GCAGC 3 cut(s) 17, 110, 153
BceAI ACGGC 2 cut(s) 118, 144
BciT130I CCWGG 1 cut(s) 160
BcnI CCSGG 1 cut(s) 36
BcoDI GTCTC 3 cut(s) 57, 233, 317
BfaI CTAG 1 cut(s) 195
BfoI RGCGCY 2 cut(s) 134, 237
BglI GCCNNNNNGGC 1 cut(s) 128
BisI GCNGC 3 cut(s) 6, 99, 167
BlsI GCNGC 3 cut(s) 7, 100, 168
Bme1390I CCNGG 2 cut(s) 36, 160
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 2 cut(s) 70, 223
BmiI GGNNCC 2 cut(s) 72, 132
BmrFI CCNGG 2 cut(s) 36, 160
BmsI GCATC 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 102
BplI GAGNNNNNCTC 2 cut(s) 37, 69
BpmI CTGGAG 1 cut(s) 142
BpuMI CCSGG 1 cut(s) 36
BsaHI GRCGYC 2 cut(s) 131, 242
BsaJI CCNNGG 2 cut(s) 90, 245
Bse1I ACTGG 1 cut(s) 383
Bse3DI GCAATG 1 cut(s) 360
BseBI CCWGG 1 cut(s) 160
BseDI CCNNGG 2 cut(s) 90, 245
BseGI GGATG 1 cut(s) 86
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 2 cut(s) 68, 228
BseNI ACTGG 1 cut(s) 383
BseXI GCAGC 3 cut(s) 17, 110, 153
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 1 cut(s) 71
BshNI GGYRCC 1 cut(s) 130
BsiSI CCGG 1 cut(s) 35
BslFI GGGAC 1 cut(s) 160
BsmAI GTCTC 3 cut(s) 57, 233, 317
BsmBI CGTCTC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 160
BsmI GAATGC 1 cut(s) 374
BsnI GGCC 1 cut(s) 71
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 1 cut(s) 309
Bsp19I CCATGG 1 cut(s) 245
BspACI CCGC 4 cut(s) 90, 92, 120, 372
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 2 cut(s) 67, 229
BspFNI CGCG 1 cut(s) 92
BspLI GGNNCC 2 cut(s) 72, 132
BspT107I GGYRCC 1 cut(s) 130
BsrDI GCAATG 1 cut(s) 360
BsrI ACTGG 1 cut(s) 383
BssECI CCNNGG 2 cut(s) 90, 245
BssMI GATC 1 cut(s) 309
BssNI GRCGYC 2 cut(s) 131, 242
BssT1I CCWWGG 1 cut(s) 245
Bst2UI CCWGG 1 cut(s) 160
Bst4CI ACNGT 2 cut(s) 214, 341
Bst6I CTCTTC 1 cut(s) 197
BstACI GRCGYC 2 cut(s) 131, 242
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 2 cut(s) 54, 237
BstDSI CCRYGG 2 cut(s) 90, 245
BstEII GGTNACC 1 cut(s) 335
BstF5I GGATG 1 cut(s) 86
BstFNI CGCG 1 cut(s) 92
BstH2I RGCGCY 2 cut(s) 134, 237
BstHHI GCGC 2 cut(s) 133, 236
BstKTI GATC 1 cut(s) 312
BstMAI GTCTC 3 cut(s) 57, 233, 317
BstMBI GATC 1 cut(s) 309
BstMWI GCNNNNNNNGC 3 cut(s) 45, 98, 128
BstNI CCWGG 1 cut(s) 160
BstPI GGTNACC 1 cut(s) 335
BstSCI CCNGG 2 cut(s) 34, 158
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 3 cut(s) 17, 110, 153
BstV2I GAAGAC 1 cut(s) 102
BsuRI GGCC 1 cut(s) 71
BtgI CCRYGG 2 cut(s) 90, 245
BtgZI GCGATG 1 cut(s) 12
BtsCI GGATG 1 cut(s) 86
Cac8I GCNNGC 1 cut(s) 232
CfoI GCGC 2 cut(s) 133, 236
Cfr13I GGNCC 2 cut(s) 70, 223
Cfr42I CCGCGG 1 cut(s) 93
CpoI CGGWCCG 1 cut(s) 223
CseI GACGC 1 cut(s) 250
CspI CGGWCCG 1 cut(s) 223
CviAII CATG 1 cut(s) 246
DdeI CTNAG 2 cut(s) 54, 237
DinI GGCGCC 1 cut(s) 132
DpnI GATC 1 cut(s) 311
DpnII GATC 1 cut(s) 309
DraIII CACNNNGTG 1 cut(s) 268
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
EciI GGCGGA 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 245
Eco24I GRGCYC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 223
Eco47III AGCGCT 1 cut(s) 235
Eco91I GGTNACC 1 cut(s) 335
EcoO65I GGTNACC 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 158
EcoT14I CCWWGG 1 cut(s) 245
EcoT38I GRGCYC 1 cut(s) 194
EgeI GGCGCC 1 cut(s) 132
EheI GGCGCC 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 245
Esp3I CGTCTC 1 cut(s) 233
FaeI CATG 1 cut(s) 249
FaiI YATR 2 cut(s) 247, 293
FaqI GGGAC 1 cut(s) 160
FatI CATG 1 cut(s) 245
Fnu4HI GCNGC 3 cut(s) 6, 99, 167
FokI GGATG 1 cut(s) 73
FriOI GRGCYC 1 cut(s) 194
Fsp4HI GCNGC 3 cut(s) 6, 99, 167
FspBI CTAG 1 cut(s) 195
GlaI GCGC 2 cut(s) 132, 235
GluI GCNGC 3 cut(s) 6, 99, 167
GsuI CTGGAG 1 cut(s) 142
HaeII RGCGCY 2 cut(s) 134, 237
HaeIII GGCC 1 cut(s) 71
HapII CCGG 1 cut(s) 35
HgaI GACGC 1 cut(s) 250
HhaI GCGC 2 cut(s) 133, 236
Hin1I GRCGYC 2 cut(s) 131, 242
Hin1II CATG 1 cut(s) 249
Hin6I GCGC 2 cut(s) 131, 234
HinP1I GCGC 2 cut(s) 131, 234
HinfI GANTC 1 cut(s) 314
HpaII CCGG 1 cut(s) 35
HphI GGTGA 1 cut(s) 347
Hpy188I TCNGA 1 cut(s) 57
Hpy99I CGWCG 1 cut(s) 145
HpyAV CCTTC 3 cut(s) 201, 281, 346
HpyCH4III ACNGT 2 cut(s) 214, 341
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 1 cut(s) 26
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 98, 128
HpyF3I CTNAG 2 cut(s) 54, 237
HpySE526I ACGT 1 cut(s) 264
Hsp92I GRCGYC 2 cut(s) 131, 242
Hsp92II CATG 1 cut(s) 249
HspAI GCGC 2 cut(s) 131, 234
KasI GGCGCC 1 cut(s) 130
KspI CCGCGG 1 cut(s) 93
Kzo9I GATC 1 cut(s) 309
LpnPI CCDG 6 cut(s) 48, 145, 160, 172, 244, 305
Lsp1109I GCAGC 3 cut(s) 17, 110, 153
LweI GCATC 1 cut(s) 35
MaeI CTAG 1 cut(s) 195
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 2 cut(s) 80, 335
MalI GATC 1 cut(s) 311
MboI GATC 1 cut(s) 309
MboII GAAGA 5 cut(s) 102, 105, 108, 145, 214
MhlI GDGCHC 1 cut(s) 194
MluCI AATT 1 cut(s) 297
Mly113I GGCGCC 1 cut(s) 131
MlyI GAGTC 1 cut(s) 323
MnlI CCTC 4 cut(s) 84, 191, 252, 326
MspA1I CMGCKG 1 cut(s) 92
MspI CCGG 1 cut(s) 35
MspR9I CCNGG 2 cut(s) 36, 160
Mva1269I GAATGC 1 cut(s) 374
MvaI CCWGG 1 cut(s) 160
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 3 cut(s) 45, 98, 128
NarI GGCGCC 1 cut(s) 131
NciI CCSGG 1 cut(s) 36
NcoI CCATGG 1 cut(s) 245
NdeII GATC 1 cut(s) 309
NlaIII CATG 1 cut(s) 249
NlaIV GGNNCC 2 cut(s) 72, 132
NmuCI GTSAC 1 cut(s) 335
PctI GAATGC 1 cut(s) 374
PkrI GCNGC 3 cut(s) 7, 100, 168
PleI GAGTC 1 cut(s) 322
PluTI GGCGCC 1 cut(s) 134
PpsI GAGTC 1 cut(s) 322
Psp6I CCWGG 1 cut(s) 158
PspEI GGTNACC 1 cut(s) 335
PspGI CCWGG 1 cut(s) 158
PspN4I GGNNCC 2 cut(s) 72, 132
PspPI GGNCC 2 cut(s) 70, 223
Rsr2I CGGWCCG 1 cut(s) 223
RsrII CGGWCCG 1 cut(s) 223
SacII CCGCGG 1 cut(s) 93
SatI GCNGC 3 cut(s) 6, 99, 167
Sau3AI GATC 1 cut(s) 309
Sau96I GGNCC 2 cut(s) 70, 223
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 2 cut(s) 36, 160
SduI GDGCHC 1 cut(s) 194
SfaNI GCATC 1 cut(s) 35
SfoI GGCGCC 1 cut(s) 132
Sfr303I CCGCGG 1 cut(s) 93
SgrBI CCGCGG 1 cut(s) 93
SinI GGWCC 1 cut(s) 223
Sse9I AATT 1 cut(s) 297
SsiI CCGC 4 cut(s) 90, 92, 120, 372
SspDI GGCGCC 1 cut(s) 130
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 2 cut(s) 34, 158
StyI CCWWGG 1 cut(s) 245
TaaI ACNGT 2 cut(s) 214, 341
TaiI ACGT 1 cut(s) 267
TaqI TCGA 2 cut(s) 200, 312
TaqII GACCGA 1 cut(s) 211
TasI AATT 1 cut(s) 297
TseFI GTSAC 1 cut(s) 335
TseI GCWGC 3 cut(s) 5, 98, 166
Tsp45I GTSAC 1 cut(s) 335
TspGWI ACGGA 3 cut(s) 66, 96, 215
VpaK11BI GGWCC 1 cut(s) 223
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.