Rmu_co8235611.1_g000001

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8235611.1
OG0001652
Physical Location & Seq
Forward (+)
269 .. 764
496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8235611.1_g000001.1.cds

Sequence Viewer

Length: 397 bp
atggtgagaccaagatgttaccttgacataaccataggaggagaaccggaaggaagaatcgtcattgagctctacaacgacgtcgtcccgaaaaccgcggagaatttcagagcgctgtgcaccggtgagaagggcattgctcccaacaccgccgtccctcttcatttcaagggggttggtttccaccgcattatcaaagggtttatgatacaagggggagacatctcagctgggaatgggagcgggggagagtcgatttacggctcgaaattcgaggatgagaatttcgagattaagcatgagaggaaggggatggtgtccatggcgaatactgggccggatagtaatggctcacagttctttattaccactactcggactccccatctggatggga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04217 ko04218 map04217 map04218
Pfam Domains
Protein Families
Pro_isomerase TPR_1 TPR_2

Protein Analysis

132

Amino Acids

14.32

Weight (kDa)

6.06

Isoelectric Point (pI)

15.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 84
AccBSI CCGCTC 1 cut(s) 243
AccII CGCG 1 cut(s) 98
AciI CCGC 5 cut(s) 96, 98, 150, 187, 243
AcsI RAATTY 3 cut(s) 103, 269, 283
AcyI GRCGYC 1 cut(s) 81
AfeI AGCGCT 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 375
AgeI ACCGGT 1 cut(s) 122
AgsI TTSAA 1 cut(s) 169
AluBI AGCT 2 cut(s) 70, 230
AluI AGCT 2 cut(s) 70, 230
Alw21I GWGCWC 2 cut(s) 72, 122
Alw26I GTCTC 1 cut(s) 213
Alw44I GTGCAC 1 cut(s) 118
Aor51HI AGCGCT 1 cut(s) 114
AoxI GGCC 1 cut(s) 335
ApaLI GTGCAC 1 cut(s) 118
ApoI RAATTY 3 cut(s) 103, 269, 283
AsiGI ACCGGT 1 cut(s) 122
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 1 cut(s) 335
AsuHPI GGTGA 2 cut(s) 16, 137
BaeGI GKGCMC 1 cut(s) 122
BanII GRGCYC 1 cut(s) 72
Bbv12I GWGCWC 2 cut(s) 72, 122
BccI CCATC 3 cut(s) 307, 386, 393
BceAI ACGGC 2 cut(s) 137, 277
BcoDI GTCTC 1 cut(s) 213
BfoI RGCGCY 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 335
BmrI ACTGGG 1 cut(s) 342
BmuI ACTGGG 1 cut(s) 342
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 96, 321
BsaWI WCCGGW 2 cut(s) 46, 122
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bsc4I CCNNNNNNNGG 1 cut(s) 375
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 337
Bse3DI GCAATG 1 cut(s) 135
BseDI CCNNGG 2 cut(s) 96, 321
BseGI GGATG 3 cut(s) 283, 318, 397
BseLI CCNNNNNNNGG 1 cut(s) 375
BseMI GCAATG 1 cut(s) 135
BseMII CTCAG 1 cut(s) 240
BseNI ACTGG 1 cut(s) 337
BseRI GAGGAG 1 cut(s) 54
BseSI GKGCMC 1 cut(s) 122
BseYI CCCAGC 1 cut(s) 230
Bsh1236I CGCG 1 cut(s) 98
BshFI GGCC 1 cut(s) 337
BshTI ACCGGT 1 cut(s) 122
BsiHKAI GWGCWC 2 cut(s) 72, 122
BsiSI CCGG 3 cut(s) 47, 123, 338
BslFI GGGAC 2 cut(s) 71, 140
BslI CCNNNNNNNGG 1 cut(s) 375
BsmAI GTCTC 1 cut(s) 213
BsmFI GGGAC 2 cut(s) 71, 140
BsnI GGCC 1 cut(s) 337
Bsp1286I GDGCHC 2 cut(s) 72, 122
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 5 cut(s) 96, 98, 150, 187, 243
BspANI GGCC 1 cut(s) 337
BspCNI CTCAG 1 cut(s) 239
BspFNI CGCG 1 cut(s) 98
BsrBI CCGCTC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 135
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 1 cut(s) 337
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 2 cut(s) 96, 321
BssNI GRCGYC 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 321
Bst4CI ACNGT 1 cut(s) 357
Bst6I CTCTTC 1 cut(s) 165
BstACI GRCGYC 1 cut(s) 81
BstDEI CTNAG 1 cut(s) 226
BstDSI CCRYGG 2 cut(s) 96, 321
BstF5I GGATG 3 cut(s) 283, 318, 397
BstFNI CGCG 1 cut(s) 98
BstH2I RGCGCY 1 cut(s) 116
BstHHI GCGC 1 cut(s) 115
BstMAI GTCTC 1 cut(s) 213
BstSLI GKGCMC 1 cut(s) 122
BstUI CGCG 1 cut(s) 98
BstXI CCANNNNNNTGG 1 cut(s) 392
BsuRI GGCC 1 cut(s) 337
BtgI CCRYGG 2 cut(s) 96, 321
BtsCI GGATG 3 cut(s) 283, 318, 397
CfoI GCGC 1 cut(s) 115
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 335
Cfr42I CCGCGG 1 cut(s) 99
CspAI ACCGGT 1 cut(s) 122
CviAII CATG 2 cut(s) 299, 322
CviJI RGCY 5 cut(s) 70, 230, 264, 337, 351
CviKI_1 RGCY 5 cut(s) 70, 230, 264, 337, 351
DdeI CTNAG 1 cut(s) 226
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Ecl136II GAGCTC 1 cut(s) 70
Eco130I CCWWGG 1 cut(s) 321
Eco24I GRGCYC 1 cut(s) 72
Eco47III AGCGCT 1 cut(s) 114
Eco53kI GAGCTC 1 cut(s) 70
EcoICRI GAGCTC 1 cut(s) 70
EcoT14I CCWWGG 1 cut(s) 321
EcoT38I GRGCYC 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 2 cut(s) 302, 325
FaiI YATR 5 cut(s) 29, 35, 206, 300, 323
FaqI GGGAC 2 cut(s) 71, 140
FatI CATG 2 cut(s) 298, 321
FauI CCCGC 1 cut(s) 236
FokI GGATG 2 cut(s) 290, 325
FriOI GRGCYC 1 cut(s) 72
GlaI GCGC 1 cut(s) 114
GsaI CCCAGC 1 cut(s) 234
HaeII RGCGCY 1 cut(s) 116
HaeIII GGCC 1 cut(s) 337
HapII CCGG 3 cut(s) 47, 123, 338
HhaI GCGC 1 cut(s) 115
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 2 cut(s) 302, 325
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HinfI GANTC 3 cut(s) 57, 251, 379
HpaII CCGG 3 cut(s) 47, 123, 338
HphI GGTGA 2 cut(s) 16, 137
Hpy166II GTNNAC 1 cut(s) 120
Hpy188I TCNGA 2 cut(s) 110, 378
Hpy188III TCNNGA 3 cut(s) 88, 289, 389
Hpy8I GTNNAC 1 cut(s) 120
Hpy99I CGWCG 2 cut(s) 83, 86
HpyAV CCTTC 3 cut(s) 44, 124, 301
HpyCH4III ACNGT 1 cut(s) 357
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 1 cut(s) 120
HpyF3I CTNAG 1 cut(s) 226
HpySE526I ACGT 1 cut(s) 81
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 2 cut(s) 302, 325
HspAI GCGC 1 cut(s) 113
KspI CCGCGG 1 cut(s) 99
LmnI GCTCC 2 cut(s) 145, 240
LpnPI CCDG 6 cut(s) 60, 136, 216, 318, 351, 374
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 17
MbiI CCGCTC 1 cut(s) 243
MboII GAAGA 2 cut(s) 66, 152
MhlI GDGCHC 2 cut(s) 72, 122
MluCI AATT 3 cut(s) 103, 269, 283
MlyI GAGTC 2 cut(s) 260, 373
MnlI CCTC 4 cut(s) 32, 168, 268, 297
MseI TTAA 1 cut(s) 294
MslI CAYNNNNRTG 1 cut(s) 390
MspA1I CMGCKG 2 cut(s) 98, 230
MspI CCGG 3 cut(s) 47, 123, 338
MvnI CGCG 1 cut(s) 98
NcoI CCATGG 1 cut(s) 321
NlaIII CATG 2 cut(s) 302, 325
PfeI GAWTC 1 cut(s) 57
PflFI GACNNNGTC 1 cut(s) 83
PinAI ACCGGT 1 cut(s) 122
PleI GAGTC 2 cut(s) 259, 373
PpsI GAGTC 2 cut(s) 259, 373
Psp124BI GAGCTC 1 cut(s) 72
PspFI CCCAGC 1 cut(s) 230
PspPI GGNCC 1 cut(s) 335
PsyI GACNNNGTC 1 cut(s) 83
PvuII CAGCTG 1 cut(s) 230
RseI CAYNNNNRTG 1 cut(s) 390
SacI GAGCTC 1 cut(s) 72
SacII CCGCGG 1 cut(s) 99
SaqAI TTAA 1 cut(s) 294
Sau96I GGNCC 1 cut(s) 335
SchI GAGTC 2 cut(s) 260, 373
SduI GDGCHC 2 cut(s) 72, 122
SetI ASST 4 cut(s) 24, 72, 84, 232
Sfr303I CCGCGG 1 cut(s) 99
SgrAI CRCCGGYG 1 cut(s) 122
SgrBI CCGCGG 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 390
Sse9I AATT 3 cut(s) 103, 269, 283
SsiI CCGC 5 cut(s) 96, 98, 150, 187, 243
SstI GAGCTC 1 cut(s) 72
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 1 cut(s) 357
TaiI ACGT 1 cut(s) 84
TaqI TCGA 4 cut(s) 254, 266, 273, 288
TasI AATT 3 cut(s) 103, 269, 283
TfiI GAWTC 1 cut(s) 57
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TspDTI ATGAA 1 cut(s) 152
Tth111I GACNNNGTC 1 cut(s) 83
VneI GTGCAC 1 cut(s) 118
XapI RAATTY 3 cut(s) 103, 269, 283
ZraI GACGTC 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.