RLG00000007054

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001652
Physical Location & Seq
Reverse (-)
13119269 .. 13121750
2482 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007054

Sequence Viewer

Length: 780 bp
ATGGCAGCTTCTTTGTCAAATGTTGCATCGCTTCCGGGCTCTGTGAGCGTGTCTCAAATTAGAGCTTTGGCCCCTCCATGTAACTCATCCGCGGTTGCAGCATTTCCGTCTTCTTCTTCTTCCGCCAAAACGGCGCCGTTGTCGTCGTCGTCCAGCTTCTTCTCCAGGTCGCTGCGTTTGTCCCCTCTCACATTCAACCCTAGCTCCCAGAGAAGGACTGTTAGCTCGGTCCGTGCCAGCGCTGAGGAACCAGCATTGCAGGCGAAAGTGACCAACAAGGTGTATTTTGATATTAGCATTGGCAATCCGGTAGGGAAGCTGGCCGGAAGGATTGTGATTGGGTTGTTTGGTGATGATGTGCCCCAAACTGTGGAGAATTTCCGTTCCCTTTGCACAGGTGAGAAAGGCTTTGGGTACAAGGGCTCTGCGTTCCATCGTGTGATCAAGGATTTCATGATTCAAGGCGGGGACTTTGATAAGGGCAATGGTACTGGAGGCAAAAGCATTTATGGGCGTACATTTAAAGATGAGAACTTTAAGTTGCTTCATACTGGACCAGGAGTTCTTAGCATGGCGAATGCAGGCCCCAATACCAATGGAAGTCAGTTCTTCATATGCACAGTACAGACACCATGGCTAAATGGGAGGCACGTTGTGTTTGGGCAAGTTTTGGAAGGCATGGAAATTGTTAGGCTGATCGAGTCGCAGGAGACAGATAGAGGTGACCGTCCTACAAAGAAGGTAGTCATTGCTGAATGCGGAGAGCTTCCAGTAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

260

Amino Acids

27.45

Weight (kDa)

9.39

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 102 - 254 1.2e-51 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 133
AccB7I CCANNNNNTGG 1 cut(s) 370
AccII CGCG 1 cut(s) 92
AciI CCGC 5 cut(s) 90, 92, 123, 465, 759
AcoI YGGCCR 1 cut(s) 321
AcsI RAATTY 1 cut(s) 376
AcyI GRCGYC 1 cut(s) 134
AdeI CACNNNGTG 1 cut(s) 655
AfaI GTAC 4 cut(s) 416, 490, 517, 624
AfeI AGCGCT 1 cut(s) 241
AfiI CCNNNNNNNGG 2 cut(s) 213, 370
AgsI TTSAA 2 cut(s) 196, 461
AjnI CCWGG 2 cut(s) 164, 556
AloI GAACNNNNNNTCC 2 cut(s) 546, 578
AluBI AGCT 7 cut(s) 8, 65, 156, 204, 225, 319, 766
AluI AGCT 7 cut(s) 8, 65, 156, 204, 225, 319, 766
Alw26I GTCTC 2 cut(s) 57, 704
Aor51HI AGCGCT 1 cut(s) 241
AoxI GGCC 3 cut(s) 69, 321, 583
ApeKI GCWGC 3 cut(s) 5, 98, 172
ApoI RAATTY 1 cut(s) 376
AspLEI GCGC 2 cut(s) 136, 242
AspS9I GGNCC 4 cut(s) 70, 229, 554, 584
AsuC2I CCSGG 1 cut(s) 36
AsuHPI GGTGA 3 cut(s) 362, 410, 734
AvaII GGWCC 2 cut(s) 229, 554
BaeGI GKGCMC 1 cut(s) 363
BanI GGYRCC 1 cut(s) 133
BanII GRGCYC 2 cut(s) 41, 425
BbsI GAAGAC 1 cut(s) 102
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 3 cut(s) 17, 110, 159
BccI CCATC 1 cut(s) 441
BceAI ACGGC 2 cut(s) 121, 147
BciT130I CCWGG 2 cut(s) 166, 558
BclI TGATCA 1 cut(s) 441
BcnI CCSGG 1 cut(s) 36
BcoDI GTCTC 2 cut(s) 57, 704
BfaI CTAG 1 cut(s) 201
BfoI RGCGCY 2 cut(s) 137, 243
BglI GCCNNNNNGGC 1 cut(s) 131
BisI GCNGC 3 cut(s) 6, 99, 173
BlsI GCNGC 3 cut(s) 7, 100, 174
Bme1390I CCNGG 3 cut(s) 36, 166, 558
Bme18I GGWCC 2 cut(s) 229, 554
BmgT120I GGNCC 4 cut(s) 70, 229, 554, 584
BmiI GGNNCC 4 cut(s) 72, 135, 249, 586
BmrFI CCNGG 3 cut(s) 36, 166, 558
BmsI GCATC 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 102
BplI GAGNNNNNCTC 2 cut(s) 37, 69
BpmI CTGGAG 2 cut(s) 148, 513
Bpu10I CCTNAGC 1 cut(s) 243
BpuMI CCSGG 1 cut(s) 36
BsaHI GRCGYC 1 cut(s) 134
BsaJI CCNNGG 2 cut(s) 90, 632
BsaWI WCCGGW 1 cut(s) 307
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 2 cut(s) 213, 370
Bse1I ACTGG 3 cut(s) 496, 556, 770
Bse3DI GCAATG 3 cut(s) 254, 490, 747
BseBI CCWGG 2 cut(s) 166, 558
BseDI CCNNGG 2 cut(s) 90, 632
BseGI GGATG 1 cut(s) 86
BseLI CCNNNNNNNGG 2 cut(s) 213, 370
BseMI GCAATG 3 cut(s) 254, 490, 747
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 3 cut(s) 496, 556, 770
BseSI GKGCMC 1 cut(s) 363
BseXI GCAGC 3 cut(s) 17, 110, 159
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 3 cut(s) 71, 323, 585
BshNI GGYRCC 1 cut(s) 133
BsiSI CCGG 3 cut(s) 35, 308, 324
BslFI GGGAC 2 cut(s) 166, 482
BslI CCNNNNNNNGG 2 cut(s) 213, 370
BsmAI GTCTC 2 cut(s) 57, 704
BsmFI GGGAC 2 cut(s) 166, 482
BsmI GAATGC 2 cut(s) 583, 761
BsnI GGCC 3 cut(s) 71, 323, 585
Bsp1286I GDGCHC 3 cut(s) 41, 363, 425
Bsp143I GATC 2 cut(s) 441, 696
Bsp19I CCATGG 1 cut(s) 632
BspACI CCGC 5 cut(s) 90, 92, 123, 465, 759
BspANI GGCC 3 cut(s) 71, 323, 585
BspCNI CTCAG 1 cut(s) 235
BspFNI CGCG 1 cut(s) 92
BspHI TCATGA 1 cut(s) 453
BspLI GGNNCC 4 cut(s) 72, 135, 249, 586
BspT107I GGYRCC 1 cut(s) 133
BsrDI GCAATG 3 cut(s) 254, 490, 747
BsrI ACTGG 3 cut(s) 496, 556, 770
BssECI CCNNGG 2 cut(s) 90, 632
BssMI GATC 2 cut(s) 441, 696
BssNI GRCGYC 1 cut(s) 134
BssT1I CCWWGG 1 cut(s) 632
Bst2UI CCWGG 2 cut(s) 166, 558
Bst4CI ACNGT 4 cut(s) 220, 370, 622, 728
BstACI GRCGYC 1 cut(s) 134
BstC8I GCNNGC 4 cut(s) 238, 261, 321, 583
BstDEI CTNAG 2 cut(s) 243, 566
BstDSI CCRYGG 2 cut(s) 90, 632
BstEII GGTNACC 1 cut(s) 722
BstF5I GGATG 1 cut(s) 86
BstFNI CGCG 1 cut(s) 92
BstH2I RGCGCY 2 cut(s) 137, 243
BstHHI GCGC 2 cut(s) 136, 242
BstKTI GATC 2 cut(s) 444, 699
BstMAI GTCTC 2 cut(s) 57, 704
BstMBI GATC 2 cut(s) 441, 696
BstMWI GCNNNNNNNGC 4 cut(s) 45, 98, 131, 260
BstNI CCWGG 2 cut(s) 166, 558
BstPI GGTNACC 1 cut(s) 722
BstSCI CCNGG 3 cut(s) 34, 164, 556
BstSLI GKGCMC 1 cut(s) 363
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 3 cut(s) 17, 110, 159
BstV2I GAAGAC 1 cut(s) 102
BsuRI GGCC 3 cut(s) 71, 323, 585
BtgI CCRYGG 2 cut(s) 90, 632
BtgZI GCGATG 1 cut(s) 12
BtsCI GGATG 1 cut(s) 86
Cac8I GCNNGC 4 cut(s) 238, 261, 321, 583
CciI TCATGA 1 cut(s) 453
CfoI GCGC 2 cut(s) 136, 242
Cfr13I GGNCC 4 cut(s) 70, 229, 554, 584
Cfr42I CCGCGG 1 cut(s) 93
CpoI CGGWCCG 1 cut(s) 229
Csp6I GTAC 4 cut(s) 415, 489, 516, 623
CspI CGGWCCG 1 cut(s) 229
CviAII CATG 5 cut(s) 78, 454, 571, 633, 679
CviQI GTAC 4 cut(s) 415, 489, 516, 623
DdeI CTNAG 2 cut(s) 243, 566
DinI GGCGCC 1 cut(s) 135
DpnI GATC 2 cut(s) 443, 698
DpnII GATC 2 cut(s) 441, 696
DraI TTTAAA 1 cut(s) 523
DraIII CACNNNGTG 1 cut(s) 655
EaeI YGGCCR 1 cut(s) 321
EciI GGCGGA 1 cut(s) 112
Eco130I CCWWGG 1 cut(s) 632
Eco24I GRGCYC 2 cut(s) 41, 425
Eco47I GGWCC 2 cut(s) 229, 554
Eco47III AGCGCT 1 cut(s) 241
Eco91I GGTNACC 1 cut(s) 722
EcoO109I RGGNCCY 1 cut(s) 584
EcoO65I GGTNACC 1 cut(s) 722
EcoRII CCWGG 2 cut(s) 164, 556
EcoT14I CCWWGG 1 cut(s) 632
EcoT38I GRGCYC 2 cut(s) 41, 425
EgeI GGCGCC 1 cut(s) 135
EheI GGCGCC 1 cut(s) 135
ErhI CCWWGG 1 cut(s) 632
FaeI CATG 5 cut(s) 81, 457, 574, 636, 682
FaiI YATR 9 cut(s) 79, 455, 510, 549, 572, 614, 616, 634, 680
FaqI GGGAC 2 cut(s) 166, 482
FatI CATG 5 cut(s) 77, 453, 570, 632, 678
FauI CCCGC 1 cut(s) 458
FauNDI CATATG 1 cut(s) 614
FbaI TGATCA 1 cut(s) 441
Fnu4HI GCNGC 3 cut(s) 6, 99, 173
FokI GGATG 1 cut(s) 73
FriOI GRGCYC 2 cut(s) 41, 425
Fsp4HI GCNGC 3 cut(s) 6, 99, 173
FspBI CTAG 1 cut(s) 201
GlaI GCGC 2 cut(s) 135, 241
GluI GCNGC 3 cut(s) 6, 99, 173
GsuI CTGGAG 2 cut(s) 148, 513
HaeII RGCGCY 2 cut(s) 137, 243
HaeIII GGCC 3 cut(s) 71, 323, 585
HapII CCGG 3 cut(s) 35, 308, 324
HhaI GCGC 2 cut(s) 136, 242
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 5 cut(s) 81, 457, 574, 636, 682
Hin6I GCGC 2 cut(s) 134, 240
HinP1I GCGC 2 cut(s) 134, 240
HinfI GANTC 2 cut(s) 457, 701
HpaII CCGG 3 cut(s) 35, 308, 324
HphI GGTGA 3 cut(s) 362, 410, 734
Hpy188III TCNNGA 1 cut(s) 454
Hpy99I CGWCG 2 cut(s) 148, 151
HpyAV CCTTC 4 cut(s) 207, 321, 668, 733
HpyCH4III ACNGT 4 cut(s) 220, 370, 622, 728
HpyCH4IV ACGT 1 cut(s) 651
HpyCH4V TGCA 6 cut(s) 26, 98, 259, 393, 581, 618
HpyF10VI GCNNNNNNNGC 4 cut(s) 45, 98, 131, 260
HpyF3I CTNAG 2 cut(s) 243, 566
HpySE526I ACGT 1 cut(s) 651
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 5 cut(s) 81, 457, 574, 636, 682
HspAI GCGC 2 cut(s) 134, 240
KasI GGCGCC 1 cut(s) 133
Ksp22I TGATCA 1 cut(s) 441
KspI CCGCGG 1 cut(s) 93
Kzo9I GATC 2 cut(s) 441, 696
LmnI GCTCC 1 cut(s) 209
Lsp1109I GCAGC 3 cut(s) 17, 110, 159
LweI GCATC 1 cut(s) 35
MaeI CTAG 1 cut(s) 201
MaeII ACGT 1 cut(s) 651
MaeIII GTNAC 3 cut(s) 80, 268, 722
MalI GATC 2 cut(s) 443, 698
MboI GATC 2 cut(s) 441, 696
MboII GAAGA 6 cut(s) 102, 105, 108, 111, 151, 601
MhlI GDGCHC 3 cut(s) 41, 363, 425
MluCI AATT 3 cut(s) 57, 376, 684
Mly113I GGCGCC 1 cut(s) 134
MlyI GAGTC 1 cut(s) 710
MnlI CCTC 6 cut(s) 84, 195, 238, 488, 639, 713
MseI TTAA 2 cut(s) 522, 537
MspA1I CMGCKG 1 cut(s) 92
MspI CCGG 3 cut(s) 35, 308, 324
MspR9I CCNGG 3 cut(s) 36, 166, 558
Mva1269I GAATGC 2 cut(s) 583, 761
MvaI CCWGG 2 cut(s) 166, 558
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 4 cut(s) 45, 98, 131, 260
NarI GGCGCC 1 cut(s) 134
NciI CCSGG 1 cut(s) 36
NcoI CCATGG 1 cut(s) 632
NdeI CATATG 1 cut(s) 614
NdeII GATC 2 cut(s) 441, 696
NlaIII CATG 5 cut(s) 81, 457, 574, 636, 682
NlaIV GGNNCC 4 cut(s) 72, 135, 249, 586
NmuCI GTSAC 2 cut(s) 268, 722
PagI TCATGA 1 cut(s) 453
PctI GAATGC 2 cut(s) 583, 761
PfeI GAWTC 1 cut(s) 457
PflMI CCANNNNNTGG 1 cut(s) 370
PkrI GCNGC 3 cut(s) 7, 100, 174
PleI GAGTC 1 cut(s) 709
PluTI GGCGCC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 709
Psp6I CCWGG 2 cut(s) 164, 556
PspEI GGTNACC 1 cut(s) 722
PspGI CCWGG 2 cut(s) 164, 556
PspN4I GGNNCC 4 cut(s) 72, 135, 249, 586
PspPI GGNCC 4 cut(s) 70, 229, 554, 584
RsaI GTAC 4 cut(s) 416, 490, 517, 624
RsaNI GTAC 4 cut(s) 415, 489, 516, 623
Rsr2I CGGWCCG 1 cut(s) 229
RsrII CGGWCCG 1 cut(s) 229
SacII CCGCGG 1 cut(s) 93
SaqAI TTAA 2 cut(s) 522, 537
SatI GCNGC 3 cut(s) 6, 99, 173
Sau3AI GATC 2 cut(s) 441, 696
Sau96I GGNCC 4 cut(s) 70, 229, 554, 584
SchI GAGTC 1 cut(s) 710
ScrFI CCNGG 3 cut(s) 36, 166, 558
SduI GDGCHC 3 cut(s) 41, 363, 425
SfaNI GCATC 1 cut(s) 35
SfoI GGCGCC 1 cut(s) 135
Sfr303I CCGCGG 1 cut(s) 93
SgrBI CCGCGG 1 cut(s) 93
SinI GGWCC 2 cut(s) 229, 554
Sse9I AATT 3 cut(s) 57, 376, 684
SsiI CCGC 5 cut(s) 90, 92, 123, 465, 759
SspDI GGCGCC 1 cut(s) 133
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 3 cut(s) 34, 164, 556
StyI CCWWGG 1 cut(s) 632
TaaI ACNGT 4 cut(s) 220, 370, 622, 728
TaiI ACGT 1 cut(s) 654
TaqI TCGA 1 cut(s) 699
TaqII GACCGA 1 cut(s) 217
TasI AATT 3 cut(s) 57, 376, 684
TatI WGTACW 1 cut(s) 622
TfiI GAWTC 1 cut(s) 457
Tru1I TTAA 2 cut(s) 522, 537
Tru9I TTAA 2 cut(s) 522, 537
TseFI GTSAC 2 cut(s) 268, 722
TseI GCWGC 3 cut(s) 5, 98, 172
Tsp45I GTSAC 2 cut(s) 268, 722
TspDTI ATGAA 3 cut(s) 442, 536, 601
TspGWI ACGGA 3 cut(s) 96, 221, 371
Van91I CCANNNNNTGG 1 cut(s) 370
VpaK11BI GGWCC 2 cut(s) 229, 554
XapI RAATTY 1 cut(s) 376
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.