Rh2AG208100

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0001652
Physical Location & Seq
Reverse (-)
21141431 .. 21153279
11849 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG208100.1

Sequence Viewer

Length: 543 bp
ATGACCTCCGGAGCTCCGCTGCCCATGGTGGTTCTGTCTCAGATTGAGTCGCTGGGATTCGTGGTGAGCCATGGATACGGTTTGACGGAGACTGCGGGGGTGGTGGTGTCGTGCGCATGGATGTGGTGGAGCTGCCATGACTGCAAATTTGCTTTCACTGTGGAGAATTTCCGTTCCCTTTGCACAGGTGAGAAAGGCTTTGGGTACAAGGGTTCTGCCTTCCATCGTGTGATCAAGGATTTCATGATTCAAGGAGGGGACTTCGATAAGGGCAATGGTACTGGAGGCAAAAGCATTTATGGGCTGCTTCATACTGGACCAGGAGTTCTTAGCATGGCAAATGCAGGCCCCAATACCAATGGAAGTCAATTCTTCATATGCACAGTACAGACGCCATGGCTAAATGGGAGGCACGTTGTGTTTGGGCAAGTTTTGGAAGGCATGGAAATTGTTAGGCTGATCGAGTCGCAGGAGACAGATAGAGGTGACCGTCCTACAAAGAAGGTAGTCATTGCTGACTGCGGAGAGCTTCCAGTAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

180

Amino Acids

19.4

Weight (kDa)

6.18

Isoelectric Point (pI)

26.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 52 - 175 5.5e-40 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 115
AccIII TCCGGA 1 cut(s) 8
AciI CCGC 3 cut(s) 17, 95, 522
AcsI RAATTY 2 cut(s) 146, 166
AcyI GRCGYC 1 cut(s) 392
AdeI CACNNNGTG 1 cut(s) 418
AfaI GTAC 3 cut(s) 206, 280, 387
AgsI TTSAA 1 cut(s) 251
AjnI CCWGG 1 cut(s) 319
AloI GAACNNNNNNTCC 2 cut(s) 309, 341
AluBI AGCT 3 cut(s) 14, 132, 529
AluI AGCT 3 cut(s) 14, 132, 529
Alw21I GWGCWC 1 cut(s) 16
Alw26I GTCTC 3 cut(s) 42, 83, 467
Aor13HI TCCGGA 1 cut(s) 8
AoxI GGCC 1 cut(s) 346
ApeKI GCWGC 3 cut(s) 19, 132, 304
ApoI RAATTY 2 cut(s) 146, 166
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AspLEI GCGC 1 cut(s) 116
AspS9I GGNCC 2 cut(s) 317, 347
AsuHPI GGTGA 3 cut(s) 76, 200, 497
AvaII GGWCC 1 cut(s) 317
BaeI ACNNNNGTAYC 2 cut(s) 196, 229
BanII GRGCYC 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 16
BbvI GCAGC 3 cut(s) 6, 119, 291
BccI CCATC 1 cut(s) 231
BciT130I CCWGG 1 cut(s) 321
BciVI GTATCC 1 cut(s) 68
BclI TGATCA 1 cut(s) 231
BcoDI GTCTC 3 cut(s) 42, 83, 467
BfuI GTATCC 1 cut(s) 68
BisI GCNGC 3 cut(s) 20, 133, 305
BlsI GCNGC 3 cut(s) 21, 134, 306
Bme1390I CCNGG 1 cut(s) 321
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 2 cut(s) 317, 347
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 1 cut(s) 321
BpmI CTGGAG 1 cut(s) 303
BsaHI GRCGYC 1 cut(s) 392
BsaJI CCNNGG 3 cut(s) 24, 70, 395
BsaWI WCCGGW 1 cut(s) 8
Bse1I ACTGG 3 cut(s) 286, 319, 533
Bse3DI GCAATG 2 cut(s) 280, 510
BseAI TCCGGA 1 cut(s) 8
BseBI CCWGG 1 cut(s) 321
BseDI CCNNGG 3 cut(s) 24, 70, 395
BseGI GGATG 1 cut(s) 126
BseMI GCAATG 2 cut(s) 280, 510
BseMII CTCAG 1 cut(s) 53
BseNI ACTGG 3 cut(s) 286, 319, 533
BseXI GCAGC 3 cut(s) 6, 119, 291
BseYI CCCAGC 1 cut(s) 52
BshFI GGCC 1 cut(s) 348
BsiHKAI GWGCWC 1 cut(s) 16
BsiSI CCGG 1 cut(s) 9
BslFI GGGAC 1 cut(s) 272
BsmAI GTCTC 3 cut(s) 42, 83, 467
BsmFI GGGAC 1 cut(s) 272
BsnI GGCC 1 cut(s) 348
Bsp1286I GDGCHC 1 cut(s) 16
Bsp13I TCCGGA 1 cut(s) 8
Bsp143I GATC 2 cut(s) 231, 459
Bsp19I CCATGG 3 cut(s) 24, 70, 395
BspACI CCGC 3 cut(s) 17, 95, 522
BspANI GGCC 1 cut(s) 348
BspCNI CTCAG 1 cut(s) 52
BspEI TCCGGA 1 cut(s) 8
BspHI TCATGA 1 cut(s) 243
BspLI GGNNCC 1 cut(s) 349
BsrDI GCAATG 2 cut(s) 280, 510
BsrI ACTGG 3 cut(s) 286, 319, 533
BssECI CCNNGG 3 cut(s) 24, 70, 395
BssMI GATC 2 cut(s) 231, 459
BssNI GRCGYC 1 cut(s) 392
BssT1I CCWWGG 3 cut(s) 24, 70, 395
Bst2UI CCWGG 1 cut(s) 321
Bst4CI ACNGT 4 cut(s) 80, 160, 385, 491
BstACI GRCGYC 1 cut(s) 392
BstC8I GCNNGC 1 cut(s) 346
BstDEI CTNAG 2 cut(s) 39, 329
BstDSI CCRYGG 3 cut(s) 24, 70, 395
BstEII GGTNACC 1 cut(s) 485
BstF5I GGATG 1 cut(s) 126
BstHHI GCGC 1 cut(s) 116
BstKTI GATC 2 cut(s) 234, 462
BstMAI GTCTC 3 cut(s) 42, 83, 467
BstMBI GATC 2 cut(s) 231, 459
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstNI CCWGG 1 cut(s) 321
BstPI GGTNACC 1 cut(s) 485
BstSCI CCNGG 1 cut(s) 319
BstV1I GCAGC 3 cut(s) 6, 119, 291
BsuI GTATCC 1 cut(s) 68
BsuRI GGCC 1 cut(s) 348
BtgI CCRYGG 3 cut(s) 24, 70, 395
BtsCI GGATG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 346
CciI TCATGA 1 cut(s) 243
CfoI GCGC 1 cut(s) 116
Cfr13I GGNCC 2 cut(s) 317, 347
CseI GACGC 1 cut(s) 400
Csp6I GTAC 3 cut(s) 205, 279, 386
CviAII CATG 8 cut(s) 25, 71, 117, 137, 244, 334, 396, 442
CviQI GTAC 3 cut(s) 205, 279, 386
DdeI CTNAG 2 cut(s) 39, 329
DpnI GATC 2 cut(s) 233, 461
DpnII GATC 2 cut(s) 231, 459
DraIII CACNNNGTG 1 cut(s) 418
Ecl136II GAGCTC 1 cut(s) 14
Eco130I CCWWGG 3 cut(s) 24, 70, 395
Eco24I GRGCYC 1 cut(s) 16
Eco47I GGWCC 1 cut(s) 317
Eco53kI GAGCTC 1 cut(s) 14
Eco91I GGTNACC 1 cut(s) 485
EcoICRI GAGCTC 1 cut(s) 14
EcoO109I RGGNCCY 1 cut(s) 347
EcoO65I GGTNACC 1 cut(s) 485
EcoRII CCWGG 1 cut(s) 319
EcoT14I CCWWGG 3 cut(s) 24, 70, 395
EcoT38I GRGCYC 1 cut(s) 16
ErhI CCWWGG 3 cut(s) 24, 70, 395
FaeI CATG 8 cut(s) 28, 74, 120, 140, 247, 337, 399, 445
FaqI GGGAC 1 cut(s) 272
FatI CATG 8 cut(s) 24, 70, 116, 136, 243, 333, 395, 441
FauI CCCGC 1 cut(s) 88
FauNDI CATATG 1 cut(s) 377
FbaI TGATCA 1 cut(s) 231
Fnu4HI GCNGC 3 cut(s) 20, 133, 305
FokI GGATG 1 cut(s) 133
FriOI GRGCYC 1 cut(s) 16
Fsp4HI GCNGC 3 cut(s) 20, 133, 305
FspAI RTGCGCAY 1 cut(s) 115
FspI TGCGCA 1 cut(s) 115
GlaI GCGC 1 cut(s) 115
GluI GCNGC 3 cut(s) 20, 133, 305
GsaI CCCAGC 1 cut(s) 56
GsuI CTGGAG 1 cut(s) 303
HaeIII GGCC 1 cut(s) 348
HapII CCGG 1 cut(s) 9
HgaI GACGC 1 cut(s) 400
HhaI GCGC 1 cut(s) 116
Hin1I GRCGYC 1 cut(s) 392
Hin1II CATG 8 cut(s) 28, 74, 120, 140, 247, 337, 399, 445
Hin6I GCGC 1 cut(s) 114
HinP1I GCGC 1 cut(s) 114
HinfI GANTC 4 cut(s) 47, 57, 247, 464
HpaII CCGG 1 cut(s) 9
HphI GGTGA 3 cut(s) 76, 200, 497
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 2 cut(s) 9, 244
HpyAV CCTTC 3 cut(s) 229, 431, 496
HpyCH4III ACNGT 4 cut(s) 80, 160, 385, 491
HpyCH4IV ACGT 1 cut(s) 414
HpyCH4V TGCA 4 cut(s) 144, 183, 344, 381
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
HpyF3I CTNAG 2 cut(s) 39, 329
HpySE526I ACGT 1 cut(s) 414
Hsp92I GRCGYC 1 cut(s) 392
Hsp92II CATG 8 cut(s) 28, 74, 120, 140, 247, 337, 399, 445
HspAI GCGC 1 cut(s) 114
Kpn2I TCCGGA 1 cut(s) 8
Ksp22I TGATCA 1 cut(s) 231
Kzo9I GATC 2 cut(s) 231, 459
LmnI GCTCC 3 cut(s) 11, 19, 129
LpnPI CCDG 9 cut(s) 22, 38, 171, 267, 300, 306, 330, 333, 455
Lsp1109I GCAGC 3 cut(s) 6, 119, 291
MaeII ACGT 1 cut(s) 414
MaeIII GTNAC 1 cut(s) 485
MalI GATC 2 cut(s) 233, 461
MboI GATC 2 cut(s) 231, 459
MboII GAAGA 1 cut(s) 364
MhlI GDGCHC 1 cut(s) 16
MluCI AATT 4 cut(s) 146, 166, 368, 447
MlyI GAGTC 2 cut(s) 56, 473
MnlI CCTC 5 cut(s) 16, 248, 278, 402, 476
MroI TCCGGA 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 121
MspA1I CMGCKG 1 cut(s) 19
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 321
MvaI CCWGG 1 cut(s) 321
MwoI GCNNNNNNNGC 1 cut(s) 141
NcoI CCATGG 3 cut(s) 24, 70, 395
NdeI CATATG 1 cut(s) 377
NdeII GATC 2 cut(s) 231, 459
NlaIII CATG 8 cut(s) 28, 74, 120, 140, 247, 337, 399, 445
NlaIV GGNNCC 1 cut(s) 349
NmuCI GTSAC 1 cut(s) 485
NsbI TGCGCA 1 cut(s) 115
PagI TCATGA 1 cut(s) 243
PfeI GAWTC 2 cut(s) 57, 247
PkrI GCNGC 3 cut(s) 21, 134, 306
PleI GAGTC 2 cut(s) 55, 472
PpsI GAGTC 2 cut(s) 55, 472
Psp124BI GAGCTC 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 319
PspEI GGTNACC 1 cut(s) 485
PspFI CCCAGC 1 cut(s) 52
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 2 cut(s) 317, 347
RsaI GTAC 3 cut(s) 206, 280, 387
RsaNI GTAC 3 cut(s) 205, 279, 386
RseI CAYNNNNRTG 1 cut(s) 121
SacI GAGCTC 1 cut(s) 16
SatI GCNGC 3 cut(s) 20, 133, 305
Sau3AI GATC 2 cut(s) 231, 459
Sau96I GGNCC 2 cut(s) 317, 347
SchI GAGTC 2 cut(s) 56, 473
ScrFI CCNGG 1 cut(s) 321
SduI GDGCHC 1 cut(s) 16
SetI ASST 8 cut(s) 8, 16, 134, 190, 417, 487, 507, 531
SinI GGWCC 1 cut(s) 317
SmiMI CAYNNNNRTG 1 cut(s) 121
Sse9I AATT 4 cut(s) 146, 166, 368, 447
SsiI CCGC 3 cut(s) 17, 95, 522
SstI GAGCTC 1 cut(s) 16
StyD4I CCNGG 1 cut(s) 319
StyI CCWWGG 3 cut(s) 24, 70, 395
TaaI ACNGT 4 cut(s) 80, 160, 385, 491
TaiI ACGT 1 cut(s) 417
TaqI TCGA 2 cut(s) 264, 462
TasI AATT 4 cut(s) 146, 166, 368, 447
TatI WGTACW 1 cut(s) 385
TfiI GAWTC 2 cut(s) 57, 247
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 3 cut(s) 19, 132, 304
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 3 cut(s) 232, 299, 364
TspGWI ACGGA 2 cut(s) 101, 161
TspRI CASTG 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 317
XapI RAATTY 2 cut(s) 146, 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.