pycom15g24270

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0001652
Physical Location & Seq
Forward (+)
18478393 .. 18479270
878 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g24270.1

Sequence Viewer

Length: 597 bp
ATGGGGAGGCCAAGGTGCTACTTGGACATGACCATTGGAGGAGAGCTAGAAGGAAGAGTAGTAGTGGAACTCTACAATGACATTGTCCCCAAAACAGCTGAGAATTTCAGAGCTCTCTGCACTGGTGAGAGGGGCATTGGCCCCCACACCAATGCTCCTCTGCATTACAAGGGTGTTTGTTTCCACCGCGTTATCAAAGGTTTTATGATACAAGGTGGAGACATTTCGGCTGGAAATGGCAGCGGGGGAGAGTCGATTTATGGGTTGAAGTTTGAAGATGAAAACTTTGACATAAAGCATGAGAGAAAAGGGATGCTGTCCATGGCTAATAAGGGCCCTGACACCAATGGCTCTCAGTTTTTCATTACCACCACTCGGACTTCCCATCTTGATGGGAAACATGTTGCGTTTGGGAAGGTGATCAAGGGCATGGGCGTGGTTCGTTCGGTTGAACATTTGAACACGAAAGACGGCGACTTGCCTATCGAAGAAGTCGTTATTTCGGATTGTGGGCAGCTTCCTGAGGGAGCAGATGATGGGGTGTGTAACTTCTTCAAAGATGGTGATGTTTATCCTGATTGGCCTGATCGATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04217 ko04218 map04217 map04218
Pfam Domains
Protein Families
Pro_isomerase TPR_1 TPR_2

Protein Analysis

199

Amino Acids

21.64

Weight (kDa)

5.48

Isoelectric Point (pI)

15.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 7 - 171 7.6e-50 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 189
AciI CCGC 2 cut(s) 187, 243
AcsI RAATTY 1 cut(s) 103
AfiI CCNNNNNNNGG 1 cut(s) 375
AflIII ACRYGT 1 cut(s) 400
AgsI TTSAA 5 cut(s) 268, 275, 452, 460, 556
AluBI AGCT 4 cut(s) 46, 98, 113, 517
AluI AGCT 4 cut(s) 46, 98, 113, 517
Alw21I GWGCWC 1 cut(s) 115
Alw26I GTCTC 1 cut(s) 213
AoxI GGCC 4 cut(s) 8, 139, 334, 581
ApaI GGGCCC 1 cut(s) 338
ApeKI GCWGC 2 cut(s) 240, 514
ApoI RAATTY 1 cut(s) 103
AspS9I GGNCC 3 cut(s) 140, 334, 335
AsuHPI GGTGA 3 cut(s) 137, 430, 575
AxyI CCTNAGG 1 cut(s) 522
BaeGI GKGCMC 1 cut(s) 338
BanII GRGCYC 2 cut(s) 115, 338
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 2 cut(s) 252, 526
BccI CCATC 4 cut(s) 386, 393, 530, 554
BceAI ACGGC 1 cut(s) 487
BclI TGATCA 1 cut(s) 420
BcoDI GTCTC 1 cut(s) 213
BfaI CTAG 1 cut(s) 47
BisI GCNGC 2 cut(s) 241, 515
BlsI GCNGC 2 cut(s) 242, 516
BmgT120I GGNCC 3 cut(s) 140, 334, 335
BmiI GGNNCC 2 cut(s) 142, 336
BmsI GCATC 1 cut(s) 303
Bsa29I ATCGAT 1 cut(s) 589
BsaBI GATNNNNATC 1 cut(s) 570
BsaJI CCNNGG 2 cut(s) 11, 321
BsaXI ACNNNNNCTCC 2 cut(s) 139, 169
Bsc4I CCNNNNNNNGG 1 cut(s) 375
Bse1I ACTGG 1 cut(s) 127
Bse21I CCTNAGG 1 cut(s) 522
Bse8I GATNNNNATC 1 cut(s) 570
BseCI ATCGAT 1 cut(s) 589
BseDI CCNNGG 2 cut(s) 11, 321
BseGI GGATG 1 cut(s) 318
BseJI GATNNNNATC 1 cut(s) 570
BseLI CCNNNNNNNGG 1 cut(s) 375
BseMII CTCAG 3 cut(s) 90, 368, 513
BseNI ACTGG 1 cut(s) 127
BseRI GAGGAG 2 cut(s) 54, 147
BseSI GKGCMC 1 cut(s) 338
BseXI GCAGC 2 cut(s) 252, 526
BsgI GTGCAG 1 cut(s) 103
Bsh1236I CGCG 1 cut(s) 189
BshFI GGCC 4 cut(s) 10, 141, 336, 583
BshVI ATCGAT 1 cut(s) 589
BsiHKAI GWGCWC 1 cut(s) 115
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 375
BsmAI GTCTC 1 cut(s) 213
BsmFI GGGAC 1 cut(s) 71
BsnI GGCC 4 cut(s) 10, 141, 336, 583
Bsp120I GGGCCC 1 cut(s) 334
Bsp1286I GDGCHC 2 cut(s) 115, 338
Bsp143I GATC 3 cut(s) 420, 586, 590
Bsp19I CCATGG 1 cut(s) 321
BspACI CCGC 2 cut(s) 187, 243
BspANI GGCC 4 cut(s) 10, 141, 336, 583
BspCNI CTCAG 3 cut(s) 91, 367, 514
BspDI ATCGAT 1 cut(s) 589
BspFNI CGCG 1 cut(s) 189
BspLI GGNNCC 2 cut(s) 142, 336
BsrI ACTGG 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 11, 321
BssMI GATC 3 cut(s) 420, 586, 590
BssT1I CCWWGG 2 cut(s) 11, 321
Bst6I CTCTTC 1 cut(s) 49
BstDEI CTNAG 3 cut(s) 99, 354, 522
BstDSI CCRYGG 1 cut(s) 321
BstF5I GGATG 1 cut(s) 318
BstFNI CGCG 1 cut(s) 189
BstKTI GATC 3 cut(s) 423, 589, 593
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 3 cut(s) 420, 586, 590
BstNSI RCATGY 1 cut(s) 404
BstSLI GKGCMC 1 cut(s) 338
BstUI CGCG 1 cut(s) 189
BstV1I GCAGC 2 cut(s) 252, 526
BstXI CCANNNNNNTGG 1 cut(s) 392
Bsu15I ATCGAT 1 cut(s) 589
Bsu36I CCTNAGG 1 cut(s) 522
BsuRI GGCC 4 cut(s) 10, 141, 336, 583
BsuTUI ATCGAT 1 cut(s) 589
BtgI CCRYGG 1 cut(s) 321
BtsCI GGATG 1 cut(s) 318
BtsIMutI CAGTG 1 cut(s) 120
Cfr13I GGNCC 3 cut(s) 140, 334, 335
ClaI ATCGAT 1 cut(s) 589
CviAII CATG 5 cut(s) 28, 299, 322, 401, 430
DdeI CTNAG 3 cut(s) 99, 354, 522
DpnI GATC 3 cut(s) 422, 588, 592
DpnII GATC 3 cut(s) 420, 586, 590
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Ecl136II GAGCTC 1 cut(s) 113
Eco130I CCWWGG 2 cut(s) 11, 321
Eco24I GRGCYC 2 cut(s) 115, 338
Eco53kI GAGCTC 1 cut(s) 113
Eco81I CCTNAGG 1 cut(s) 522
EcoICRI GAGCTC 1 cut(s) 113
EcoO109I RGGNCCY 2 cut(s) 334, 335
EcoT14I CCWWGG 2 cut(s) 11, 321
EcoT38I GRGCYC 2 cut(s) 115, 338
ErhI CCWWGG 2 cut(s) 11, 321
FaeI CATG 5 cut(s) 31, 302, 325, 404, 433
FaiI YATR 8 cut(s) 29, 206, 261, 293, 300, 323, 402, 431
FaqI GGGAC 1 cut(s) 71
FatI CATG 5 cut(s) 27, 298, 321, 400, 429
FauI CCCGC 1 cut(s) 236
FbaI TGATCA 1 cut(s) 420
Fnu4HI GCNGC 2 cut(s) 241, 515
FokI GGATG 1 cut(s) 325
FriOI GRGCYC 2 cut(s) 115, 338
Fsp4HI GCNGC 2 cut(s) 241, 515
FspBI CTAG 1 cut(s) 47
GluI GCNGC 2 cut(s) 241, 515
HaeIII GGCC 4 cut(s) 10, 141, 336, 583
Hin1II CATG 5 cut(s) 31, 302, 325, 404, 433
HinfI GANTC 1 cut(s) 251
HphI GGTGA 3 cut(s) 137, 430, 575
Hpy188I TCNGA 3 cut(s) 110, 378, 505
Hpy188III TCNNGA 4 cut(s) 389, 521, 575, 594
HpyAV CCTTC 2 cut(s) 44, 409
HpyCH4V TGCA 2 cut(s) 120, 163
HpyF3I CTNAG 3 cut(s) 99, 354, 522
Hsp92II CATG 5 cut(s) 31, 302, 325, 404, 433
Ksp22I TGATCA 1 cut(s) 420
Kzo9I GATC 3 cut(s) 420, 586, 590
LmnI GCTCC 2 cut(s) 160, 527
LpnPI CCDG 5 cut(s) 108, 216, 351, 534, 588
Lsp1109I GCAGC 2 cut(s) 252, 526
LweI GCATC 1 cut(s) 303
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 545
MalI GATC 3 cut(s) 422, 588, 592
MboI GATC 3 cut(s) 420, 586, 590
MboII GAAGA 4 cut(s) 66, 287, 500, 544
MhlI GDGCHC 2 cut(s) 115, 338
MluCI AATT 1 cut(s) 103
MlyI GAGTC 1 cut(s) 260
MnlI CCTC 4 cut(s) 32, 123, 168, 517
MslI CAYNNNNRTG 3 cut(s) 150, 390, 434
MspA1I CMGCKG 2 cut(s) 98, 243
MvnI CGCG 1 cut(s) 189
NcoI CCATGG 1 cut(s) 321
NdeII GATC 3 cut(s) 420, 586, 590
NlaIII CATG 5 cut(s) 31, 302, 325, 404, 433
NlaIV GGNNCC 2 cut(s) 142, 336
NspI RCATGY 1 cut(s) 404
PciI ACATGT 1 cut(s) 400
PcsI WCGNNNNNNNCGW 1 cut(s) 492
PflFI GACNNNGTC 1 cut(s) 83
PkrI GCNGC 2 cut(s) 242, 516
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
PscI ACATGT 1 cut(s) 400
Psp124BI GAGCTC 1 cut(s) 115
PspN4I GGNNCC 2 cut(s) 142, 336
PspOMI GGGCCC 1 cut(s) 334
PspPI GGNCC 3 cut(s) 140, 334, 335
PsyI GACNNNGTC 1 cut(s) 83
PvuII CAGCTG 1 cut(s) 98
RseI CAYNNNNRTG 3 cut(s) 150, 390, 434
SacI GAGCTC 1 cut(s) 115
SatI GCNGC 2 cut(s) 241, 515
Sau3AI GATC 3 cut(s) 420, 586, 590
Sau96I GGNCC 3 cut(s) 140, 334, 335
SchI GAGTC 1 cut(s) 260
SduI GDGCHC 2 cut(s) 115, 338
SetI ASST 8 cut(s) 17, 48, 100, 115, 202, 217, 420, 519
SfaNI GCATC 1 cut(s) 303
SmiMI CAYNNNNRTG 3 cut(s) 150, 390, 434
Sse9I AATT 1 cut(s) 103
SsiI CCGC 2 cut(s) 187, 243
SspMI CTAG 1 cut(s) 47
SstI GAGCTC 1 cut(s) 115
StyI CCWWGG 2 cut(s) 11, 321
TaqI TCGA 3 cut(s) 254, 486, 589
TasI AATT 1 cut(s) 103
TscAI CASTG 1 cut(s) 127
TseI GCWGC 2 cut(s) 240, 514
TspDTI ATGAA 2 cut(s) 294, 352
TspRI CASTG 1 cut(s) 127
Tth111I GACNNNGTC 1 cut(s) 83
XapI RAATTY 1 cut(s) 103
XceI RCATGY 1 cut(s) 404
XspI CTAG 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.