Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001652

Physical Location & Seq

Genomic Coordinates Reverse (-)

14108793 .. 14115764

Gene Structure 6972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG120300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAATGAACTGATGGTGTTCGTTCTTCCTAAAAGGGCAACCATCAAATTTGCTTTCACTGTGGAGAATTTCCGTTCCCTTTGCACAGGTGAGAAAGGCTTTGGGTACAAGGGTTCTGCCTTCCATCGTGTGATCAAGGATTTCATGATTCAAGGAGGGGACTTCGATAAGGGCAATGGTACTGGAGGCAAAAGCATTTATGGGCGTACATTTAAAGATGAGAACTTTAAGTTGCTTCATACTGGACCAGGAGTTCTTAGCATGGCAAATGCAGGCCCCAATACCAATGGAAGTCAATTCTTCATATGCACAGTACAGACGCCATGGCTAAATGGGAGGCACGTTGTGTTTAGGCAAGTTTTGGAAGGCATGGAAATTGTTAGGCTGATCGAGTCGCAGGAGACAGATAGAGGTGACCGTCCTACAAAGAAGGTAGTCATTGCTGACTGCGGAGAGCTTCCAGTAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

156

Amino Acids

17.28

Weight (kDa)

9.07

Isoelectric Point (pI)

17.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	20 - 151	3.8e-43	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13120 AT5G13120
fragaria_vesca	FvH4_4g23300
malus_domestica	MD13G1123100.v1.1 MD15G1288900.v1.1 MD16G1123800.v1.1
prunus_persica	Prupe.1G221800_v2.0.a1 Prupe.1G221800_v2.0.a1 Prupe.1G221800_v2.0.a1
pyrus_communis	pycom03g09380 pycom07g05330 pycom07g05380 pycom13g10750 pycom15g24270 pycom16g10580
rosa_chinensis	RchiOBHm_Chr4g0429661 RchiOBHm_Chr5g0043491 RchiOBHm_Chr5g0043561 RchiOBHm_Chr6g0254041 RchiOBHm_Chr7g0205991
rosa_laevigata	RLG00000007054
rosa_multiflora	Rmu_co8235611.1_g000001 Rmu_sc0006590.1_g000005 Rmu_sc0010349.1_g000005 Rmu_sc0024031.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433360 Rroxscaffold_2G00113860 Rroxscaffold_4G00286780 Rroxscaffold_5G00371340
rosa_rugosa	Rorug01G0354400 Rorug04G0237500
rosa_samantha	Rh1AG363000 Rh2AG208100 Rh2BG430300 Rh4AG293600 Rh4BG299400 Rh4CG315200 Rh4DG296500 Rh5AG191200 Rh5BG299100 Rh6CG120300 Rh6DG108100 Rh7AG305600 Rh7CG324700
rosa_wichuraiana	Rw2G028480 Rw4G025410 Rw5G017430 Rw6G019830 Rw7G028310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	450
AcsI	RAATTY	2 cut(s)	47, 67
AcyI	GRCGYC	1 cut(s)	320
AdeI	CACNNNGTG	1 cut(s)	346
AfaI	GTAC	4 cut(s)	107, 181, 208, 315
AgsI	TTSAA	1 cut(s)	152
AjnI	CCWGG	1 cut(s)	247
AloI	GAACNNNNNNTCC	2 cut(s)	237, 269
AluBI	AGCT	1 cut(s)	457
AluI	AGCT	1 cut(s)	457
Alw26I	GTCTC	1 cut(s)	395
AoxI	GGCC	1 cut(s)	274
ApoI	RAATTY	2 cut(s)	47, 67
AspS9I	GGNCC	2 cut(s)	245, 275
AsuHPI	GGTGA	2 cut(s)	101, 425
AvaII	GGWCC	1 cut(s)	245
BaeI	ACNNNNGTAYC	2 cut(s)	97, 130
BccI	CCATC	3 cut(s)	7, 50, 132
BciT130I	CCWGG	1 cut(s)	249
BclI	TGATCA	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	395
Bme1390I	CCNGG	1 cut(s)	249
Bme18I	GGWCC	1 cut(s)	245
BmgT120I	GGNCC	2 cut(s)	245, 275
BmiI	GGNNCC	1 cut(s)	277
BmrFI	CCNGG	1 cut(s)	249
BpmI	CTGGAG	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	323
Bse1I	ACTGG	3 cut(s)	187, 247, 461
Bse3DI	GCAATG	2 cut(s)	181, 438
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	323
BseMI	GCAATG	2 cut(s)	181, 438
BseNI	ACTGG	3 cut(s)	187, 247, 461
BshFI	GGCC	1 cut(s)	276
BslFI	GGGAC	1 cut(s)	173
BsmAI	GTCTC	1 cut(s)	395
BsmFI	GGGAC	1 cut(s)	173
BsnI	GGCC	1 cut(s)	276
Bsp143I	GATC	2 cut(s)	132, 387
Bsp19I	CCATGG	1 cut(s)	323
BspACI	CCGC	1 cut(s)	450
BspANI	GGCC	1 cut(s)	276
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	277
BsrDI	GCAATG	2 cut(s)	181, 438
BsrI	ACTGG	3 cut(s)	187, 247, 461
BssECI	CCNNGG	1 cut(s)	323
BssMI	GATC	2 cut(s)	132, 387
BssNI	GRCGYC	1 cut(s)	320
BssT1I	CCWWGG	1 cut(s)	323
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	3 cut(s)	61, 313, 419
BstACI	GRCGYC	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	1 cut(s)	257
BstDSI	CCRYGG	1 cut(s)	323
BstEII	GGTNACC	1 cut(s)	413
BstKTI	GATC	2 cut(s)	135, 390
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	2 cut(s)	132, 387
BstNI	CCWGG	1 cut(s)	249
BstPI	GGTNACC	1 cut(s)	413
BstSCI	CCNGG	1 cut(s)	247
BsuRI	GGCC	1 cut(s)	276
BtgI	CCRYGG	1 cut(s)	323
BtsIMutI	CAGTG	1 cut(s)	57
Cac8I	GCNNGC	1 cut(s)	274
CciI	TCATGA	1 cut(s)	144
Cfr13I	GGNCC	2 cut(s)	245, 275
CseI	GACGC	1 cut(s)	328
Csp6I	GTAC	4 cut(s)	106, 180, 207, 314
CviAII	CATG	4 cut(s)	145, 262, 324, 370
CviJI	RGCY	6 cut(s)	99, 276, 328, 385, 457, 467
CviKI_1	RGCY	6 cut(s)	99, 276, 328, 385, 457, 467
CviQI	GTAC	4 cut(s)	106, 180, 207, 314
DdeI	CTNAG	1 cut(s)	257
DpnI	GATC	2 cut(s)	134, 389
DpnII	GATC	2 cut(s)	132, 387
DraI	TTTAAA	1 cut(s)	214
DraIII	CACNNNGTG	1 cut(s)	346
Eco130I	CCWWGG	1 cut(s)	323
Eco47I	GGWCC	1 cut(s)	245
Eco91I	GGTNACC	1 cut(s)	413
EcoO109I	RGGNCCY	1 cut(s)	275
EcoO65I	GGTNACC	1 cut(s)	413
EcoRII	CCWGG	1 cut(s)	247
EcoT14I	CCWWGG	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	4 cut(s)	148, 265, 327, 373
FaiI	YATR	8 cut(s)	146, 201, 240, 263, 305, 307, 325, 371
FaqI	GGGAC	1 cut(s)	173
FatI	CATG	4 cut(s)	144, 261, 323, 369
FauNDI	CATATG	1 cut(s)	305
FbaI	TGATCA	1 cut(s)	132
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	276
HgaI	GACGC	1 cut(s)	328
Hin1I	GRCGYC	1 cut(s)	320
Hin1II	CATG	4 cut(s)	148, 265, 327, 373
HinfI	GANTC	2 cut(s)	148, 392
HphI	GGTGA	2 cut(s)	101, 425
Hpy188III	TCNNGA	1 cut(s)	145
HpyAV	CCTTC	3 cut(s)	130, 359, 424
HpyCH4III	ACNGT	3 cut(s)	61, 313, 419
HpyCH4IV	ACGT	1 cut(s)	342
HpyCH4V	TGCA	3 cut(s)	84, 272, 309
HpyF3I	CTNAG	1 cut(s)	257
HpySE526I	ACGT	1 cut(s)	342
Hsp92I	GRCGYC	1 cut(s)	320
Hsp92II	CATG	4 cut(s)	148, 265, 327, 373
Ksp22I	TGATCA	1 cut(s)	132
Kzo9I	GATC	2 cut(s)	132, 387
LpnPI	CCDG	7 cut(s)	72, 168, 228, 234, 258, 261, 383
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	2 cut(s)	134, 389
MboI	GATC	2 cut(s)	132, 387
MboII	GAAGA	2 cut(s)	17, 292
MluCI	AATT	4 cut(s)	47, 67, 296, 375
MlyI	GAGTC	1 cut(s)	401
MnlI	CCTC	4 cut(s)	149, 179, 330, 404
MseI	TTAA	2 cut(s)	213, 228
MspR9I	CCNGG	1 cut(s)	249
MvaI	CCWGG	1 cut(s)	249
NcoI	CCATGG	1 cut(s)	323
NdeI	CATATG	1 cut(s)	305
NdeII	GATC	2 cut(s)	132, 387
NlaIII	CATG	4 cut(s)	148, 265, 327, 373
NlaIV	GGNNCC	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	413
PagI	TCATGA	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
Psp6I	CCWGG	1 cut(s)	247
PspEI	GGTNACC	1 cut(s)	413
PspGI	CCWGG	1 cut(s)	247
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	2 cut(s)	245, 275
RsaI	GTAC	4 cut(s)	107, 181, 208, 315
RsaNI	GTAC	4 cut(s)	106, 180, 207, 314
SaqAI	TTAA	2 cut(s)	213, 228
Sau3AI	GATC	2 cut(s)	132, 387
Sau96I	GGNCC	2 cut(s)	245, 275
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	1 cut(s)	249
SetI	ASST	5 cut(s)	91, 345, 415, 435, 459
SinI	GGWCC	1 cut(s)	245
Sse9I	AATT	4 cut(s)	47, 67, 296, 375
SsiI	CCGC	1 cut(s)	450
StyD4I	CCNGG	1 cut(s)	247
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	3 cut(s)	61, 313, 419
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	2 cut(s)	165, 390
TasI	AATT	4 cut(s)	47, 67, 296, 375
TatI	WGTACW	1 cut(s)	313
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	2 cut(s)	213, 228
Tru9I	TTAA	2 cut(s)	213, 228
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	413
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	5 cut(s)	17, 21, 133, 227, 292
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	1 cut(s)	64
VpaK11BI	GGWCC	1 cut(s)	245
XapI	RAATTY	2 cut(s)	47, 67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.