FvH4_4g23300

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001652
Physical Location & Seq
Forward (+)
25824905 .. 25828227
3323 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23300.t1

Sequence Viewer

Length: 765 bp
ATGGCAGCTTCTTTGACAAATGTTGCATCGCTTCCGGGATGTGTAAGCGTGTCTCAGATTAGAGCTTTGGCTCCTCCTTGCAACTCCGCCGCAGTTGCAGCATTTCCTTCTTCTACAACCCAAACGGCGCCGTTGTTGTCGTCCAGCTTCCTTTCCAGGTCGCTGCGTTTGTCTCCTCTCACATTGAGCTCTCAGAGAAGGACTATCAGCTCGGTCCGAGCCAGCGCTGAGGAGCCAGCATTGCAAGGGAAAGTGACGAACAAGGTGTATTTTGATATTAGCATTGGTAATCCGGTGGGGAAGCTCGCTGGGAGAGTTGTGATTGGCTTGTTTGGTGATGATGTGCCCCAGACTGTCGAGAATTTCCGTTCTCTTTGCACAGGTGAGAAGGGGTTTGGGTACAAGGGCTCTGCGTTCCATCGTGTGATTAAGGACTTCATGATTCAAGGAGGGGACTTCGATAAAGGCAATGGTACTGGAGGCAAAAGCATTTACGGGCGTACATTTAAAGATGAGAACTTTAAGTTGCTTCATACTGGACCAGGAGTTCTTAGCATGGCCAATGCAGGCCCCAATACCAATGGAAGTCAGTTCTTCATATGCACAGTGCAGACACCATGGCTAAATGGGAGGCACGTTGTGTTTGGGCAAGTTTTGGAAGGCATGGAAATTGTTAGGATGATTGAGTCGCTGGAAACAGATAGAGGTGACCGTCCTACAAAGAAGGTAGTCATTGCCGAATGCGGAGAGCTTCCAGTAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

255

Amino Acids

26.99

Weight (kDa)

9.18

Isoelectric Point (pI)

32.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 97 - 249 5.9e-52 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 127
AciI CCGC 3 cut(s) 87, 90, 744
AcoI YGGCCR 1 cut(s) 558
AcsI RAATTY 1 cut(s) 361
AcyI GRCGYC 1 cut(s) 128
AdeI CACNNNGTG 1 cut(s) 640
AfaI GTAC 3 cut(s) 401, 475, 502
AfeI AGCGCT 1 cut(s) 226
AgsI TTSAA 1 cut(s) 446
AjnI CCWGG 2 cut(s) 155, 541
AloI GAACNNNNNNTCC 2 cut(s) 531, 563
AluBI AGCT 7 cut(s) 8, 65, 147, 189, 210, 304, 751
AluI AGCT 7 cut(s) 8, 65, 147, 189, 210, 304, 751
Alw21I GWGCWC 1 cut(s) 191
Alw26I GTCTC 2 cut(s) 57, 177
Aor51HI AGCGCT 1 cut(s) 226
AoxI GGCC 2 cut(s) 558, 568
ApeKI GCWGC 3 cut(s) 5, 98, 163
ApoI RAATTY 1 cut(s) 361
AspLEI GCGC 2 cut(s) 130, 227
AspS9I GGNCC 3 cut(s) 214, 539, 569
AsuC2I CCSGG 1 cut(s) 36
AsuHPI GGTGA 3 cut(s) 347, 395, 719
AvaII GGWCC 2 cut(s) 214, 539
BaeGI GKGCMC 1 cut(s) 348
BalI TGGCCA 1 cut(s) 560
BanI GGYRCC 1 cut(s) 127
BanII GRGCYC 2 cut(s) 191, 410
Bbv12I GWGCWC 1 cut(s) 191
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 3 cut(s) 17, 110, 150
BccI CCATC 1 cut(s) 426
BceAI ACGGC 2 cut(s) 115, 141
BciT130I CCWGG 2 cut(s) 157, 543
BcnI CCSGG 1 cut(s) 36
BcoDI GTCTC 2 cut(s) 57, 177
BfoI RGCGCY 2 cut(s) 131, 228
BisI GCNGC 4 cut(s) 6, 90, 99, 164
BlsI GCNGC 4 cut(s) 7, 91, 100, 165
Bme1390I CCNGG 3 cut(s) 36, 157, 543
Bme18I GGWCC 2 cut(s) 214, 539
BmgT120I GGNCC 3 cut(s) 214, 539, 569
BmiI GGNNCC 4 cut(s) 72, 129, 234, 571
BmrFI CCNGG 3 cut(s) 36, 157, 543
BmsI GCATC 1 cut(s) 35
BpmI CTGGAG 1 cut(s) 498
Bpu10I CCTNAGC 1 cut(s) 228
BpuMI CCSGG 1 cut(s) 36
BsaHI GRCGYC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 617
BsaWI WCCGGW 1 cut(s) 292
Bse1I ACTGG 3 cut(s) 481, 541, 755
Bse3DI GCAATG 3 cut(s) 239, 475, 732
BseBI CCWGG 2 cut(s) 157, 543
BseDI CCNNGG 1 cut(s) 617
BseGI GGATG 2 cut(s) 44, 684
BseMI GCAATG 3 cut(s) 239, 475, 732
BseMII CTCAG 3 cut(s) 68, 206, 219
BseNI ACTGG 3 cut(s) 481, 541, 755
BseRI GAGGAG 3 cut(s) 63, 165, 245
BseSI GKGCMC 1 cut(s) 348
BseXI GCAGC 3 cut(s) 17, 110, 150
BseYI CCCAGC 1 cut(s) 308
BsgI GTGCAG 1 cut(s) 629
BshFI GGCC 2 cut(s) 560, 570
BshNI GGYRCC 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 191
BsiSI CCGG 2 cut(s) 35, 293
BslFI GGGAC 1 cut(s) 467
BsmAI GTCTC 2 cut(s) 57, 177
BsmFI GGGAC 1 cut(s) 467
BsmI GAATGC 1 cut(s) 746
BsnI GGCC 2 cut(s) 560, 570
Bsp1286I GDGCHC 3 cut(s) 191, 348, 410
Bsp19I CCATGG 1 cut(s) 617
BspACI CCGC 3 cut(s) 87, 90, 744
BspANI GGCC 2 cut(s) 560, 570
BspCNI CTCAG 3 cut(s) 67, 205, 220
BspHI TCATGA 1 cut(s) 438
BspLI GGNNCC 4 cut(s) 72, 129, 234, 571
BspT107I GGYRCC 1 cut(s) 127
BsrDI GCAATG 3 cut(s) 239, 475, 732
BsrI ACTGG 3 cut(s) 481, 541, 755
BssECI CCNNGG 1 cut(s) 617
BssNI GRCGYC 1 cut(s) 128
BssT1I CCWWGG 1 cut(s) 617
Bst2UI CCWGG 2 cut(s) 157, 543
Bst4CI ACNGT 3 cut(s) 355, 607, 713
BstACI GRCGYC 1 cut(s) 128
BstC8I GCNNGC 4 cut(s) 223, 237, 306, 568
BstDEI CTNAG 4 cut(s) 54, 192, 228, 551
BstDSI CCRYGG 1 cut(s) 617
BstEII GGTNACC 1 cut(s) 707
BstF5I GGATG 2 cut(s) 44, 684
BstH2I RGCGCY 2 cut(s) 131, 228
BstHHI GCGC 2 cut(s) 130, 227
BstMAI GTCTC 2 cut(s) 57, 177
BstMWI GCNNNNNNNGC 3 cut(s) 95, 98, 241
BstNI CCWGG 2 cut(s) 157, 543
BstPI GGTNACC 1 cut(s) 707
BstSCI CCNGG 3 cut(s) 34, 155, 541
BstSLI GKGCMC 1 cut(s) 348
BstV1I GCAGC 3 cut(s) 17, 110, 150
BsuRI GGCC 2 cut(s) 560, 570
BtgI CCRYGG 1 cut(s) 617
BtgZI GCGATG 1 cut(s) 12
BtsCI GGATG 2 cut(s) 44, 684
BtsIMutI CAGTG 1 cut(s) 612
Cac8I GCNNGC 4 cut(s) 223, 237, 306, 568
CciI TCATGA 1 cut(s) 438
CfoI GCGC 2 cut(s) 130, 227
Cfr13I GGNCC 3 cut(s) 214, 539, 569
CpoI CGGWCCG 1 cut(s) 214
Csp6I GTAC 3 cut(s) 400, 474, 501
CspI CGGWCCG 1 cut(s) 214
CviAII CATG 4 cut(s) 439, 556, 618, 664
CviQI GTAC 3 cut(s) 400, 474, 501
DdeI CTNAG 4 cut(s) 54, 192, 228, 551
DinI GGCGCC 1 cut(s) 129
DraI TTTAAA 1 cut(s) 508
DraIII CACNNNGTG 1 cut(s) 640
EaeI YGGCCR 1 cut(s) 558
EciI GGCGGA 1 cut(s) 76
Ecl136II GAGCTC 1 cut(s) 189
Eco130I CCWWGG 1 cut(s) 617
Eco24I GRGCYC 2 cut(s) 191, 410
Eco47I GGWCC 2 cut(s) 214, 539
Eco47III AGCGCT 1 cut(s) 226
Eco53kI GAGCTC 1 cut(s) 189
Eco91I GGTNACC 1 cut(s) 707
EcoICRI GAGCTC 1 cut(s) 189
EcoO109I RGGNCCY 1 cut(s) 569
EcoO65I GGTNACC 1 cut(s) 707
EcoRII CCWGG 2 cut(s) 155, 541
EcoT14I CCWWGG 1 cut(s) 617
EcoT38I GRGCYC 2 cut(s) 191, 410
EgeI GGCGCC 1 cut(s) 129
EheI GGCGCC 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 617
FaeI CATG 4 cut(s) 442, 559, 621, 667
FaiI YATR 7 cut(s) 440, 534, 557, 599, 601, 619, 665
FaqI GGGAC 1 cut(s) 467
FatI CATG 4 cut(s) 438, 555, 617, 663
FauNDI CATATG 1 cut(s) 599
Fnu4HI GCNGC 4 cut(s) 6, 90, 99, 164
FokI GGATG 2 cut(s) 51, 691
FriOI GRGCYC 2 cut(s) 191, 410
Fsp4HI GCNGC 4 cut(s) 6, 90, 99, 164
GlaI GCGC 2 cut(s) 129, 226
GluI GCNGC 4 cut(s) 6, 90, 99, 164
GsaI CCCAGC 1 cut(s) 312
GsuI CTGGAG 1 cut(s) 498
HaeII RGCGCY 2 cut(s) 131, 228
HaeIII GGCC 2 cut(s) 560, 570
HapII CCGG 2 cut(s) 35, 293
HhaI GCGC 2 cut(s) 130, 227
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 4 cut(s) 442, 559, 621, 667
Hin6I GCGC 2 cut(s) 128, 225
HinP1I GCGC 2 cut(s) 128, 225
HinfI GANTC 2 cut(s) 442, 686
HpaII CCGG 2 cut(s) 35, 293
HphI GGTGA 3 cut(s) 347, 395, 719
Hpy188I TCNGA 3 cut(s) 57, 195, 218
Hpy188III TCNNGA 2 cut(s) 358, 439
HpyAV CCTTC 5 cut(s) 117, 192, 382, 653, 718
HpyCH4III ACNGT 3 cut(s) 355, 607, 713
HpyCH4IV ACGT 1 cut(s) 636
HpyCH4V TGCA 8 cut(s) 26, 81, 98, 244, 378, 566, 603, 610
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 98, 241
HpyF3I CTNAG 4 cut(s) 54, 192, 228, 551
HpySE526I ACGT 1 cut(s) 636
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 4 cut(s) 442, 559, 621, 667
HspAI GCGC 2 cut(s) 128, 225
KasI GGCGCC 1 cut(s) 127
LmnI GCTCC 2 cut(s) 76, 232
Lsp1109I GCAGC 3 cut(s) 17, 110, 150
LweI GCATC 1 cut(s) 35
MaeII ACGT 1 cut(s) 636
MaeIII GTNAC 2 cut(s) 253, 707
MboII GAAGA 2 cut(s) 102, 586
MhlI GDGCHC 3 cut(s) 191, 348, 410
MlsI TGGCCA 1 cut(s) 560
MluCI AATT 2 cut(s) 361, 669
MluNI TGGCCA 1 cut(s) 560
Mly113I GGCGCC 1 cut(s) 128
MlyI GAGTC 1 cut(s) 695
MnlI CCTC 7 cut(s) 84, 186, 223, 443, 473, 624, 698
Mox20I TGGCCA 1 cut(s) 560
MscI TGGCCA 1 cut(s) 560
MseI TTAA 3 cut(s) 429, 507, 522
Msp20I TGGCCA 1 cut(s) 560
MspI CCGG 2 cut(s) 35, 293
MspR9I CCNGG 3 cut(s) 36, 157, 543
Mva1269I GAATGC 1 cut(s) 746
MvaI CCWGG 2 cut(s) 157, 543
MwoI GCNNNNNNNGC 3 cut(s) 95, 98, 241
NarI GGCGCC 1 cut(s) 128
NciI CCSGG 1 cut(s) 36
NcoI CCATGG 1 cut(s) 617
NdeI CATATG 1 cut(s) 599
NlaIII CATG 4 cut(s) 442, 559, 621, 667
NlaIV GGNNCC 4 cut(s) 72, 129, 234, 571
NmuCI GTSAC 2 cut(s) 253, 707
PagI TCATGA 1 cut(s) 438
PctI GAATGC 1 cut(s) 746
PfeI GAWTC 1 cut(s) 442
PfoI TCCNGGA 1 cut(s) 34
PkrI GCNGC 4 cut(s) 7, 91, 100, 165
PleI GAGTC 1 cut(s) 694
PluTI GGCGCC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 694
Psp124BI GAGCTC 1 cut(s) 191
Psp6I CCWGG 2 cut(s) 155, 541
PspEI GGTNACC 1 cut(s) 707
PspFI CCCAGC 1 cut(s) 308
PspGI CCWGG 2 cut(s) 155, 541
PspN4I GGNNCC 4 cut(s) 72, 129, 234, 571
PspPI GGNCC 3 cut(s) 214, 539, 569
RsaI GTAC 3 cut(s) 401, 475, 502
RsaNI GTAC 3 cut(s) 400, 474, 501
Rsr2I CGGWCCG 1 cut(s) 214
RsrII CGGWCCG 1 cut(s) 214
SacI GAGCTC 1 cut(s) 191
SaqAI TTAA 3 cut(s) 429, 507, 522
SatI GCNGC 4 cut(s) 6, 90, 99, 164
Sau96I GGNCC 3 cut(s) 214, 539, 569
SchI GAGTC 1 cut(s) 695
ScrFI CCNGG 3 cut(s) 36, 157, 543
SduI GDGCHC 3 cut(s) 191, 348, 410
SfaNI GCATC 1 cut(s) 35
SfoI GGCGCC 1 cut(s) 129
SinI GGWCC 2 cut(s) 214, 539
Sse9I AATT 2 cut(s) 361, 669
SsiI CCGC 3 cut(s) 87, 90, 744
SspDI GGCGCC 1 cut(s) 127
SstI GAGCTC 1 cut(s) 191
StyD4I CCNGG 3 cut(s) 34, 155, 541
StyI CCWWGG 1 cut(s) 617
TaaI ACNGT 3 cut(s) 355, 607, 713
TaiI ACGT 1 cut(s) 639
TaqI TCGA 2 cut(s) 357, 459
TaqII GACCGA 1 cut(s) 202
TasI AATT 2 cut(s) 361, 669
TauI GCSGC 1 cut(s) 92
TfiI GAWTC 1 cut(s) 442
Tru1I TTAA 3 cut(s) 429, 507, 522
Tru9I TTAA 3 cut(s) 429, 507, 522
TscAI CASTG 1 cut(s) 612
TseFI GTSAC 2 cut(s) 253, 707
TseI GCWGC 3 cut(s) 5, 98, 163
Tsp45I GTSAC 2 cut(s) 253, 707
TspDTI ATGAA 3 cut(s) 427, 521, 586
TspGWI ACGGA 1 cut(s) 356
TspRI CASTG 1 cut(s) 612
VpaK11BI GGWCC 2 cut(s) 214, 539
XapI RAATTY 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.