Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0001652

Physical Location & Seq

Genomic Coordinates Reverse (-)

22022175 .. 22040315

Gene Structure 18141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG191200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAACAAAGCTCAAGAACAAACCAAAGCTGAAATTAAAGAACGAACCAAAGCTGGAGTTGGCATGGCAATCAGAGATGCAATACCAAAGGAAAAAGTGGGGGTGGCAGCATCGTGGGTTCCAAATCCGAGGCCAAAACTAAGGCGAGGGAGAAAGGCTCCTCGCAAAAGAAGCTACTTAAAGAATGACCTGATTTTCATCCTTGCTGATTCATATTGTACTTGGAACATTTGCAAGACTAACAAGGAAGGTGTAGCATTCTCTTTGGAGAAAATCAGTCAATTCAATGAATATTTGGAAGAGAGGCCAGAAGATGAACAAGATGATACTTTTCGTGAAGAGACGCCATGGCTAAATGGGAGGCACGTTGTGTTTGGGCAAGTTTTGGAAGGCATGGAAATTGTTAGGCTGATCGAGTCGCAGGAGACAGATAGAGGTGACCGTCCTACAAAGAAGGTAGTCATTGCTGACTGCGGAGAGCTTCCAGTAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

164

Amino Acids

18.76

Weight (kDa)

8.4

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	113 - 159	1e-11	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13120 AT5G13120
fragaria_vesca	FvH4_4g23300
malus_domestica	MD13G1123100.v1.1 MD15G1288900.v1.1 MD16G1123800.v1.1
prunus_persica	Prupe.1G221800_v2.0.a1 Prupe.1G221800_v2.0.a1 Prupe.1G221800_v2.0.a1
pyrus_communis	pycom03g09380 pycom07g05330 pycom07g05380 pycom13g10750 pycom15g24270 pycom16g10580
rosa_chinensis	RchiOBHm_Chr4g0429661 RchiOBHm_Chr5g0043491 RchiOBHm_Chr5g0043561 RchiOBHm_Chr6g0254041 RchiOBHm_Chr7g0205991
rosa_laevigata	RLG00000007054
rosa_multiflora	Rmu_co8235611.1_g000001 Rmu_sc0006590.1_g000005 Rmu_sc0010349.1_g000005 Rmu_sc0024031.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433360 Rroxscaffold_2G00113860 Rroxscaffold_4G00286780 Rroxscaffold_5G00371340
rosa_rugosa	Rorug01G0354400 Rorug04G0237500
rosa_samantha	Rh1AG363000 Rh2AG208100 Rh2BG430300 Rh4AG293600 Rh4BG299400 Rh4CG315200 Rh4DG296500 Rh5AG191200 Rh5BG299100 Rh6CG120300 Rh6DG108100 Rh7AG305600 Rh7CG324700
rosa_wichuraiana	Rw2G028480 Rw4G025410 Rw5G017430 Rw6G019830 Rw7G028310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	474
AcyI	GRCGYC	1 cut(s)	344
AdeI	CACNNNGTG	1 cut(s)	370
AfaI	GTAC	1 cut(s)	220
AgsI	TTSAA	1 cut(s)	286
AluBI	AGCT	5 cut(s)	11, 29, 53, 174, 481
AluI	AGCT	5 cut(s)	11, 29, 53, 174, 481
Alw26I	GTCTC	2 cut(s)	335, 419
AoxI	GGCC	2 cut(s)	131, 305
ApeKI	GCWGC	1 cut(s)	107
AsuHPI	GGTGA	1 cut(s)	449
BbvI	GCAGC	1 cut(s)	119
BcoDI	GTCTC	2 cut(s)	335, 419
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
BmiI	GGNNCC	2 cut(s)	120, 159
BmsI	GCATC	2 cut(s)	67, 119
BplI	GAGNNNNNCTC	2 cut(s)	142, 174
BpmI	CTGGAG	1 cut(s)	75
BsaBI	GATNNNNATC	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	344
BsaJI	CCNNGG	2 cut(s)	128, 347
Bse1I	ACTGG	1 cut(s)	485
Bse3DI	GCAATG	1 cut(s)	462
Bse8I	GATNNNNATC	1 cut(s)	197
BseDI	CCNNGG	2 cut(s)	128, 347
BseGI	GGATG	1 cut(s)	198
BseJI	GATNNNNATC	1 cut(s)	197
BseMI	GCAATG	1 cut(s)	462
BseNI	ACTGG	1 cut(s)	485
BseRI	GAGGAG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	119
BshFI	GGCC	2 cut(s)	133, 307
BsmAI	GTCTC	2 cut(s)	335, 419
BsmBI	CGTCTC	1 cut(s)	335
BsmI	GAATGC	1 cut(s)	257
BsnI	GGCC	2 cut(s)	133, 307
Bsp143I	GATC	1 cut(s)	411
Bsp19I	CCATGG	1 cut(s)	347
BspACI	CCGC	1 cut(s)	474
BspANI	GGCC	2 cut(s)	133, 307
BspLI	GGNNCC	2 cut(s)	120, 159
BsrDI	GCAATG	1 cut(s)	462
BsrI	ACTGG	1 cut(s)	485
BssECI	CCNNGG	2 cut(s)	128, 347
BssMI	GATC	1 cut(s)	411
BssNI	GRCGYC	1 cut(s)	344
BssT1I	CCWWGG	1 cut(s)	347
Bst4CI	ACNGT	1 cut(s)	443
Bst6I	CTCTTC	2 cut(s)	294, 333
BstACI	GRCGYC	1 cut(s)	344
BstDEI	CTNAG	1 cut(s)	140
BstDSI	CCRYGG	1 cut(s)	347
BstEII	GGTNACC	1 cut(s)	437
BstF5I	GGATG	1 cut(s)	198
BstKTI	GATC	1 cut(s)	414
BstMAI	GTCTC	2 cut(s)	335, 419
BstMBI	GATC	1 cut(s)	411
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstPI	GGTNACC	1 cut(s)	437
BstV1I	GCAGC	1 cut(s)	119
BsuRI	GGCC	2 cut(s)	133, 307
BtgI	CCRYGG	1 cut(s)	347
BtsCI	GGATG	1 cut(s)	198
CseI	GACGC	1 cut(s)	352
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	3 cut(s)	64, 348, 394
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	1 cut(s)	140
DpnI	GATC	1 cut(s)	413
DpnII	GATC	1 cut(s)	411
DraIII	CACNNNGTG	1 cut(s)	370
Eam1104I	CTCTTC	2 cut(s)	294, 333
EarI	CTCTTC	2 cut(s)	294, 333
Eco130I	CCWWGG	1 cut(s)	347
Eco91I	GGTNACC	1 cut(s)	437
EcoO65I	GGTNACC	1 cut(s)	437
EcoT14I	CCWWGG	1 cut(s)	347
ErhI	CCWWGG	1 cut(s)	347
Esp3I	CGTCTC	1 cut(s)	335
FaeI	CATG	3 cut(s)	67, 351, 397
FaiI	YATR	4 cut(s)	65, 214, 349, 395
FatI	CATG	3 cut(s)	63, 347, 393
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	1 cut(s)	108
GluI	GCNGC	1 cut(s)	108
GsuI	CTGGAG	1 cut(s)	75
HaeIII	GGCC	2 cut(s)	133, 307
HgaI	GACGC	1 cut(s)	352
Hin1I	GRCGYC	1 cut(s)	344
Hin1II	CATG	3 cut(s)	67, 351, 397
HinfI	GANTC	2 cut(s)	209, 416
HphI	GGTGA	1 cut(s)	449
Hpy188I	TCNGA	2 cut(s)	74, 129
Hpy188III	TCNNGA	2 cut(s)	14, 335
HpyAV	CCTTC	3 cut(s)	242, 383, 448
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	2 cut(s)	80, 234
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
HpyF3I	CTNAG	1 cut(s)	140
HpySE526I	ACGT	1 cut(s)	366
Hsp92I	GRCGYC	1 cut(s)	344
Hsp92II	CATG	3 cut(s)	67, 351, 397
Kzo9I	GATC	1 cut(s)	411
LmnI	GCTCC	1 cut(s)	163
LpnPI	CCDG	4 cut(s)	39, 203, 321, 407
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	2 cut(s)	67, 119
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	1 cut(s)	413
MboI	GATC	1 cut(s)	411
MboII	GAAGA	3 cut(s)	311, 323, 350
MluCI	AATT	3 cut(s)	33, 281, 399
MlyI	GAGTC	1 cut(s)	425
MnlI	CCTC	6 cut(s)	123, 140, 171, 297, 354, 428
MseI	TTAA	2 cut(s)	36, 179
Mva1269I	GAATGC	1 cut(s)	257
MwoI	GCNNNNNNNGC	1 cut(s)	171
NcoI	CCATGG	1 cut(s)	347
NdeII	GATC	1 cut(s)	411
NlaIII	CATG	3 cut(s)	67, 351, 397
NlaIV	GGNNCC	2 cut(s)	120, 159
NmuCI	GTSAC	1 cut(s)	437
PctI	GAATGC	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	209
PkrI	GCNGC	1 cut(s)	109
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
PspEI	GGTNACC	1 cut(s)	437
PspN4I	GGNNCC	2 cut(s)	120, 159
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	36, 179
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	1 cut(s)	411
SchI	GAGTC	1 cut(s)	425
SfaNI	GCATC	2 cut(s)	67, 119
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	3 cut(s)	33, 281, 399
SsiI	CCGC	1 cut(s)	474
SspI	AATATT	1 cut(s)	293
StyI	CCWWGG	1 cut(s)	347
TaaI	ACNGT	1 cut(s)	443
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	1 cut(s)	414
TasI	AATT	3 cut(s)	33, 281, 399
TatI	WGTACW	1 cut(s)	218
TfiI	GAWTC	1 cut(s)	209
Tru1I	TTAA	2 cut(s)	36, 179
Tru9I	TTAA	2 cut(s)	36, 179
TseFI	GTSAC	1 cut(s)	437
TseI	GCWGC	1 cut(s)	107
Tsp45I	GTSAC	1 cut(s)	437
TspDTI	ATGAA	5 cut(s)	17, 187, 201, 303, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.