Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001652

Physical Location & Seq

Genomic Coordinates Reverse (-)

38441856 .. 38443987

Gene Structure 2132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32179

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAACATTCCTGACTCCACACATACACGTAATGTCAGTTGCCCCAAACTGACGTTGATGGTGGCTGAATTCGTTGCAACAGTAATTGCTGTAGTGACTAGTGTCTATGCAAGTTTAGGACATCATAGGCCTTTTACTGTATCAATGGCAAATGCTGGCCGAAACACAAATGGATCTCAGTTCTTAATCACCAGAGTGGCTACTCCTTGGCTCGACAACAAGCACACAGTTTTTGGAAGAGTGATCAAGGGAATGGATGTCGTTCAGGCCATAGAAAAAGTAAAGACAAACAAGGATGACAAGCCCCACCAAGATGTGAAAATTCTAAATGTTACTGTCCCCAAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000413 GO:0003002 GO:0003006 GO:0003674 GO:0003682 GO:0003755 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0006464 GO:0006807 GO:0007275 GO:0007389 GO:0008144 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009888 GO:0009908 GO:0009909 GO:0009933 GO:0009965 GO:0009987 GO:0010015 GO:0010016 GO:0010051 GO:0010073 GO:0010075 GO:0010082 GO:0010305 GO:0010338 GO:0010358 GO:0016018 GO:0016604 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019222 GO:0019538 GO:0022414 GO:0022622 GO:0031056 GO:0031060 GO:0031323 GO:0031399 GO:0031974 GO:0031981 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0033043 GO:0033044 GO:0033218 GO:0036211 GO:0040008 GO:0042277 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048442 GO:0048443 GO:0048444 GO:0048447 GO:0048449 GO:0048453 GO:0048464 GO:0048466 GO:0048467 GO:0048507 GO:0048509 GO:0048532 GO:0048580 GO:0048608 GO:0048638 GO:0048646 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051246 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071013 GO:0071704 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:0140096 GO:1901564 GO:1902275 GO:1902494 GO:1905392 GO:1905393 GO:1990904 GO:2000026 GO:2000241 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase WD40

Protein Analysis

116

Amino Acids

12.75

Weight (kDa)

9.84

Isoelectric Point (pI)

28.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	41 - 113	1.7e-26	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13120 AT5G13120
fragaria_vesca	FvH4_4g23300
malus_domestica	MD13G1123100.v1.1 MD15G1288900.v1.1 MD16G1123800.v1.1
prunus_persica	Prupe.1G221800_v2.0.a1 Prupe.1G221800_v2.0.a1 Prupe.1G221800_v2.0.a1
pyrus_communis	pycom03g09380 pycom07g05330 pycom07g05380 pycom13g10750 pycom15g24270 pycom16g10580
rosa_chinensis	RchiOBHm_Chr4g0429661 RchiOBHm_Chr5g0043491 RchiOBHm_Chr5g0043561 RchiOBHm_Chr6g0254041 RchiOBHm_Chr7g0205991
rosa_laevigata	RLG00000007054
rosa_multiflora	Rmu_co8235611.1_g000001 Rmu_sc0006590.1_g000005 Rmu_sc0010349.1_g000005 Rmu_sc0024031.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433360 Rroxscaffold_2G00113860 Rroxscaffold_4G00286780 Rroxscaffold_5G00371340
rosa_rugosa	Rorug01G0354400 Rorug04G0237500
rosa_samantha	Rh1AG363000 Rh2AG208100 Rh2BG430300 Rh4AG293600 Rh4BG299400 Rh4CG315200 Rh4DG296500 Rh5AG191200 Rh5BG299100 Rh6CG120300 Rh6DG108100 Rh7AG305600 Rh7CG324700
rosa_wichuraiana	Rw2G028480 Rw4G025410 Rw5G017430 Rw6G019830 Rw7G028310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	181
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	2 cut(s)	68, 321
AflIII	ACRYGT	1 cut(s)	26
AhlI	ACTAGT	1 cut(s)	98
AleI	CACNNNNGTG	1 cut(s)	194
AlwI	GGATC	1 cut(s)	181
AoxI	GGCC	3 cut(s)	128, 157, 267
ApoI	RAATTY	2 cut(s)	68, 321
AsuHPI	GGTGA	1 cut(s)	181
BccI	CCATC	1 cut(s)	52
BclI	TGATCA	1 cut(s)	243
BcuI	ACTAGT	1 cut(s)	98
BfaI	CTAG	1 cut(s)	99
BfmI	CTRYAG	1 cut(s)	90
BoxI	GACNNNNGTC	1 cut(s)	101
BsaAI	YACGTR	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	206
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	2 cut(s)	262, 301
BseMII	CTCAG	1 cut(s)	191
BshFI	GGCC	3 cut(s)	130, 159, 269
BslFI	GGGAC	1 cut(s)	323
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	3 cut(s)	130, 159, 269
Bsp143I	GATC	2 cut(s)	173, 243
BspANI	GGCC	3 cut(s)	130, 159, 269
BspCNI	CTCAG	1 cut(s)	190
BspPI	GGATC	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	2 cut(s)	173, 243
BssT1I	CCWWGG	1 cut(s)	206
Bst4CI	ACNGT	4 cut(s)	82, 139, 229, 337
Bst6I	CTCTTC	1 cut(s)	232
BstBAI	YACGTR	1 cut(s)	29
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	177
BstF5I	GGATG	2 cut(s)	262, 301
BstKTI	GATC	2 cut(s)	176, 246
BstMBI	GATC	2 cut(s)	173, 243
BstPAI	GACNNNNGTC	1 cut(s)	101
BstSFI	CTRYAG	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	173
BsuRI	GGCC	3 cut(s)	130, 159, 269
BtsCI	GGATG	2 cut(s)	262, 301
Cac8I	GCNNGC	1 cut(s)	157
CviJI	RGCY	7 cut(s)	65, 130, 159, 200, 211, 269, 304
CviKI_1	RGCY	7 cut(s)	65, 130, 159, 200, 211, 269, 304
DdeI	CTNAG	1 cut(s)	177
DpnI	GATC	2 cut(s)	175, 245
DpnII	GATC	2 cut(s)	173, 243
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	232
EarI	CTCTTC	1 cut(s)	232
Eco130I	CCWWGG	1 cut(s)	206
Eco147I	AGGCCT	1 cut(s)	130
EcoRI	GAATTC	1 cut(s)	68
EcoT14I	CCWWGG	1 cut(s)	206
ErhI	CCWWGG	1 cut(s)	206
FaiI	YATR	4 cut(s)	24, 108, 126, 272
FaqI	GGGAC	1 cut(s)	323
FbaI	TGATCA	1 cut(s)	243
FokI	GGATG	2 cut(s)	269, 308
FspBI	CTAG	1 cut(s)	99
HaeIII	GGCC	3 cut(s)	130, 159, 269
HinfI	GANTC	1 cut(s)	14
HphI	GGTGA	1 cut(s)	181
Hpy188III	TCNNGA	1 cut(s)	11
HpyCH4III	ACNGT	4 cut(s)	82, 139, 229, 337
HpyCH4IV	ACGT	2 cut(s)	28, 53
HpyCH4V	TGCA	2 cut(s)	77, 110
HpyF3I	CTNAG	1 cut(s)	177
HpySE526I	ACGT	2 cut(s)	28, 53
Ksp22I	TGATCA	1 cut(s)	243
Kzo9I	GATC	2 cut(s)	173, 243
LpnPI	CCDG	4 cut(s)	24, 141, 205, 251
MaeI	CTAG	1 cut(s)	99
MaeII	ACGT	2 cut(s)	28, 53
MaeIII	GTNAC	2 cut(s)	94, 331
MalI	GATC	2 cut(s)	175, 245
MboI	GATC	2 cut(s)	173, 243
MboII	GAAGA	1 cut(s)	249
MflI	RGATCY	1 cut(s)	173
MluCI	AATT	3 cut(s)	68, 84, 321
MlyI	GAGTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	185, 349
MslI	CAYNNNNRTG	2 cut(s)	194, 312
NdeII	GATC	2 cut(s)	173, 243
NmuCI	GTSAC	1 cut(s)	94
OliI	CACNNNNGTG	1 cut(s)	194
PceI	AGGCCT	1 cut(s)	130
PleI	GAGTC	1 cut(s)	8
PpsI	GAGTC	1 cut(s)	8
Ppu21I	YACGTR	1 cut(s)	29
PshAI	GACNNNNGTC	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	173
RseI	CAYNNNNRTG	2 cut(s)	194, 312
SaqAI	TTAA	2 cut(s)	185, 349
Sau3AI	GATC	2 cut(s)	173, 243
SchI	GAGTC	1 cut(s)	8
SetI	ASST	2 cut(s)	31, 56
SfcI	CTRYAG	1 cut(s)	90
SmiMI	CAYNNNNRTG	2 cut(s)	194, 312
SpeI	ACTAGT	1 cut(s)	98
Sse9I	AATT	3 cut(s)	68, 84, 321
SseBI	AGGCCT	1 cut(s)	130
SspMI	CTAG	1 cut(s)	99
StuI	AGGCCT	1 cut(s)	130
StyI	CCWWGG	1 cut(s)	206
TaaI	ACNGT	4 cut(s)	82, 139, 229, 337
TaiI	ACGT	2 cut(s)	31, 56
TaqI	TCGA	1 cut(s)	213
TasI	AATT	3 cut(s)	68, 84, 321
Tru1I	TTAA	2 cut(s)	185, 349
Tru9I	TTAA	2 cut(s)	185, 349
TseFI	GTSAC	1 cut(s)	94
Tsp45I	GTSAC	1 cut(s)	94
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	2 cut(s)	68, 321
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.