Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001652

Physical Location & Seq

Genomic Coordinates Forward (+)

7752324 .. 7752830

Gene Structure 507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00286780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGCAAATTCTGGCCAAGAGACCAATGGATCACAGTTCTTCATCACAACTGTCAAAACTAGCTTGTTGGATGGTCACCATGTTGTATTTGGCAAGGTGCTTTCTGGAATGGACGTTGTGTACAAGGTTGAACGAGTAGGAGGATCGGATGGGATACTAAGAGTGAGGTTGTTATCAAAGACAGCGGTGCACTACCGATGTGACCAGCCTGCCCTACTCTTTCATAAAATGATAAGATGGCCACATCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

83

Amino Acids

9.31

Weight (kDa)

9.65

Isoelectric Point (pI)

35.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	1 - 49	1.1e-15	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13120 AT5G13120
fragaria_vesca	FvH4_4g23300
malus_domestica	MD13G1123100.v1.1 MD15G1288900.v1.1 MD16G1123800.v1.1
prunus_persica	Prupe.1G221800_v2.0.a1 Prupe.1G221800_v2.0.a1 Prupe.1G221800_v2.0.a1
pyrus_communis	pycom03g09380 pycom07g05330 pycom07g05380 pycom13g10750 pycom15g24270 pycom16g10580
rosa_chinensis	RchiOBHm_Chr4g0429661 RchiOBHm_Chr5g0043491 RchiOBHm_Chr5g0043561 RchiOBHm_Chr6g0254041 RchiOBHm_Chr7g0205991
rosa_laevigata	RLG00000007054
rosa_multiflora	Rmu_co8235611.1_g000001 Rmu_sc0006590.1_g000005 Rmu_sc0010349.1_g000005 Rmu_sc0024031.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433360 Rroxscaffold_2G00113860 Rroxscaffold_4G00286780 Rroxscaffold_5G00371340
rosa_rugosa	Rorug01G0354400 Rorug04G0237500
rosa_samantha	Rh1AG363000 Rh2AG208100 Rh2BG430300 Rh4AG293600 Rh4BG299400 Rh4CG315200 Rh4DG296500 Rh5AG191200 Rh5BG299100 Rh6CG120300 Rh6DG108100 Rh7AG305600 Rh7CG324700
rosa_wichuraiana	Rw2G028480 Rw4G025410 Rw5G017430 Rw6G019830 Rw7G028310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	185
AclWI	GGATC	2 cut(s)	37, 151
AcoI	YGGCCR	2 cut(s)	13, 239
AcsI	RAATTY	1 cut(s)	7
AfaI	GTAC	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	131
AleI	CACNNNNGTG	1 cut(s)	247
AluBI	AGCT	1 cut(s)	63
AluI	AGCT	1 cut(s)	63
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	14
Alw44I	GTGCAC	1 cut(s)	188
AlwI	GGATC	2 cut(s)	37, 151
AoxI	GGCC	2 cut(s)	13, 239
ApaLI	GTGCAC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	68
BaeGI	GKGCMC	1 cut(s)	192
BalI	TGGCCA	2 cut(s)	15, 241
Bbv12I	GWGCWC	1 cut(s)	192
BccI	CCATC	3 cut(s)	65, 143, 231
BciVI	GTATCC	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	1 cut(s)	60
BfuI	GTATCC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	14
BseGI	GGATG	2 cut(s)	76, 154
BseSI	GKGCMC	1 cut(s)	192
BshFI	GGCC	2 cut(s)	15, 241
BsiHKAI	GWGCWC	1 cut(s)	192
BsmAI	GTCTC	1 cut(s)	14
BsnI	GGCC	2 cut(s)	15, 241
Bso31I	GGTCTC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp1407I	TGTACA	1 cut(s)	120
Bsp143I	GATC	2 cut(s)	29, 143
BspACI	CCGC	1 cut(s)	185
BspANI	GGCC	2 cut(s)	15, 241
BspPI	GGATC	2 cut(s)	37, 151
BspTNI	GGTCTC	1 cut(s)	14
BsrGI	TGTACA	1 cut(s)	120
BssMI	GATC	2 cut(s)	29, 143
Bst4CI	ACNGT	2 cut(s)	36, 52
BstAUI	TGTACA	1 cut(s)	120
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	1 cut(s)	158
BstEII	GGTNACC	1 cut(s)	74
BstF5I	GGATG	2 cut(s)	76, 154
BstKTI	GATC	2 cut(s)	32, 146
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	2 cut(s)	29, 143
BstPI	GGTNACC	1 cut(s)	74
BstSLI	GKGCMC	1 cut(s)	192
BsuI	GTATCC	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	15, 241
BtsCI	GGATG	2 cut(s)	76, 154
Cac8I	GCNNGC	1 cut(s)	210
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	4 cut(s)	15, 63, 208, 241
CviKI_1	RGCY	4 cut(s)	15, 63, 208, 241
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	2 cut(s)	31, 145
DpnII	GATC	2 cut(s)	29, 143
EaeI	YGGCCR	2 cut(s)	13, 239
Eco31I	GGTCTC	1 cut(s)	14
Eco91I	GGTNACC	1 cut(s)	74
EcoO65I	GGTNACC	1 cut(s)	74
FaeI	CATG	1 cut(s)	83
FaiI	YATR	2 cut(s)	81, 225
FatI	CATG	1 cut(s)	79
FokI	GGATG	2 cut(s)	83, 161
FspBI	CTAG	1 cut(s)	60
HaeIII	GGCC	2 cut(s)	15, 241
Hin1II	CATG	1 cut(s)	83
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	2 cut(s)	121, 190
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	1 cut(s)	105
Hpy8I	GTNNAC	2 cut(s)	121, 190
HpyCH4III	ACNGT	2 cut(s)	36, 52
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	1 cut(s)	190
HpyF3I	CTNAG	1 cut(s)	158
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	83
Kzo9I	GATC	2 cut(s)	29, 143
LpnPI	CCDG	3 cut(s)	90, 218, 222
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	2 cut(s)	74, 200
MalI	GATC	2 cut(s)	31, 145
MboI	GATC	2 cut(s)	29, 143
MboII	GAAGA	1 cut(s)	31
MhlI	GDGCHC	1 cut(s)	192
MlsI	TGGCCA	2 cut(s)	15, 241
MluCI	AATT	1 cut(s)	7
MluNI	TGGCCA	2 cut(s)	15, 241
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	2 cut(s)	134, 159
Mox20I	TGGCCA	2 cut(s)	15, 241
MscI	TGGCCA	2 cut(s)	15, 241
MslI	CAYNNNNRTG	1 cut(s)	247
Msp20I	TGGCCA	2 cut(s)	15, 241
MspA1I	CMGCKG	1 cut(s)	185
NdeII	GATC	2 cut(s)	29, 143
NlaIII	CATG	1 cut(s)	83
NmuCI	GTSAC	2 cut(s)	74, 200
OliI	CACNNNNGTG	1 cut(s)	247
PspEI	GGTNACC	1 cut(s)	74
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	247
Sau3AI	GATC	2 cut(s)	29, 143
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	5 cut(s)	65, 99, 117, 129, 170
SmiMI	CAYNNNNRTG	1 cut(s)	247
Sse9I	AATT	1 cut(s)	7
SsiI	CCGC	1 cut(s)	185
SspMI	CTAG	1 cut(s)	60
TaaI	ACNGT	2 cut(s)	36, 52
TaiI	ACGT	1 cut(s)	117
TasI	AATT	1 cut(s)	7
TatI	WGTACW	1 cut(s)	120
TseFI	GTSAC	2 cut(s)	74, 200
Tsp45I	GTSAC	2 cut(s)	74, 200
TspDTI	ATGAA	2 cut(s)	31, 212
VneI	GTGCAC	1 cut(s)	188
XapI	RAATTY	1 cut(s)	7
XcmI	CCANNNNNNNNNTGG	2 cut(s)	23, 86
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.