Rw4G025410

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0001652
Physical Location & Seq
Forward (+)
51477845 .. 51480950
3106 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G025410.1

Sequence Viewer

Length: 735 bp
ATGGCAGCTTCTTTGTCAAATGTTGCATCGCTTCCGGGCTGTGTGAGCGTGTCACAGATTAGAGCTTTGGCCCCTCCGTGTAACTCATCCGCGGTTGCACCATTTCCGTCTTCTTCTTCTTCTGCCGCCAAAACGGCGCCGTTGTCGTCGTCCAGCTTCTTCTCCAGGTCGCTGCGTTTGTCCCCCCTCACATTGAGCCCTAGCTCGAAGAGAAGGACCGTTAGCTCGGTCCGTGCCAGCGCTGAGGAACCAGCATTGCAGGCGAAAGTGACCAACAAGGTGTATTTTGATGTTAGCATTGGTAATCCGGTAGGGAAGCTGGCCGGAAGGATTGATCGGGTTAAAGGCTTTGGGTACAAGGGTTCTGCATTCCATCGTGTGATCAAGGATTTCATGATTCAAGGAGGGGACTTCGATAAGGGCAATGGTACTGGAGGCAAAAGCATTTATGGGCGTACATTTAAAGATGAGAACTTTAAGTTGCTTCATACTGGACCAGGAGTTCTTAGCATGGCAAATGCAGGCCCCAATACCAATGGAAGTCAGTTCTTCATATGCACAGTACAGACGCCATGGCTAAATGGGAGGCACGTTGTGTTTGGGCAAGTTTTGGAAGGCATGGAAATTGTTAGCCTGATCGAGTCGCAGGAGACAGATAGAGGTGACCGTCCTACAAAGAAGAGCAGCGGCACCCAGATTCCAAACAAGAACGACAAACATTGGGTTGGGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

244

Amino Acids

25.93

Weight (kDa)

9.97

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 118 - 227 1.5e-37 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 136, 689
AccII CGCG 1 cut(s) 92
AciI CCGC 4 cut(s) 90, 92, 126, 687
AcoI YGGCCR 1 cut(s) 321
AcyI GRCGYC 2 cut(s) 137, 569
AdeI CACNNNGTG 1 cut(s) 595
AfaI GTAC 4 cut(s) 356, 430, 457, 564
AfeI AGCGCT 1 cut(s) 241
AgsI TTSAA 1 cut(s) 401
AjnI CCWGG 2 cut(s) 164, 496
AloI GAACNNNNNNTCC 2 cut(s) 486, 518
AluBI AGCT 6 cut(s) 8, 65, 156, 204, 225, 319
AluI AGCT 6 cut(s) 8, 65, 156, 204, 225, 319
Alw26I GTCTC 1 cut(s) 644
Aor51HI AGCGCT 1 cut(s) 241
AoxI GGCC 3 cut(s) 69, 321, 523
ApeKI GCWGC 3 cut(s) 5, 172, 684
AspLEI GCGC 2 cut(s) 139, 242
AspS9I GGNCC 5 cut(s) 70, 216, 229, 494, 524
AsuC2I CCSGG 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 674
AvaII GGWCC 3 cut(s) 216, 229, 494
BaeI ACNNNNGTAYC 2 cut(s) 346, 379
BanI GGYRCC 2 cut(s) 136, 689
BanII GRGCYC 1 cut(s) 200
BbsI GAAGAC 1 cut(s) 102
BbvCI CCTCAGC 1 cut(s) 243
BbvI GCAGC 3 cut(s) 17, 159, 696
BccI CCATC 1 cut(s) 381
BceAI ACGGC 2 cut(s) 124, 150
BciT130I CCWGG 2 cut(s) 166, 498
BclI TGATCA 1 cut(s) 381
BcnI CCSGG 1 cut(s) 36
BcoDI GTCTC 1 cut(s) 644
BfaI CTAG 1 cut(s) 201
BfoI RGCGCY 2 cut(s) 140, 243
BglI GCCNNNNNGGC 1 cut(s) 134
BisI GCNGC 5 cut(s) 6, 126, 173, 685, 688
BlsI GCNGC 5 cut(s) 7, 127, 174, 686, 689
Bme1390I CCNGG 3 cut(s) 36, 166, 498
Bme18I GGWCC 3 cut(s) 216, 229, 494
BmgT120I GGNCC 5 cut(s) 70, 216, 229, 494, 524
BmiI GGNNCC 5 cut(s) 72, 138, 249, 526, 691
BmrFI CCNGG 3 cut(s) 36, 166, 498
BmsI GCATC 1 cut(s) 35
BpiI GAAGAC 1 cut(s) 102
BpmI CTGGAG 2 cut(s) 148, 453
Bpu10I CCTNAGC 1 cut(s) 243
BpuMI CCSGG 1 cut(s) 36
BsaHI GRCGYC 2 cut(s) 137, 569
BsaJI CCNNGG 2 cut(s) 90, 572
BsaWI WCCGGW 1 cut(s) 307
Bse1I ACTGG 2 cut(s) 436, 496
Bse3DI GCAATG 2 cut(s) 254, 430
BseBI CCWGG 2 cut(s) 166, 498
BseDI CCNNGG 2 cut(s) 90, 572
BseGI GGATG 1 cut(s) 86
BseMI GCAATG 2 cut(s) 254, 430
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 2 cut(s) 436, 496
BseXI GCAGC 3 cut(s) 17, 159, 696
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 3 cut(s) 71, 323, 525
BshNI GGYRCC 2 cut(s) 136, 689
BsiSI CCGG 3 cut(s) 35, 308, 324
BslFI GGGAC 2 cut(s) 166, 422
BsmAI GTCTC 1 cut(s) 644
BsmFI GGGAC 2 cut(s) 166, 422
BsmI GAATGC 1 cut(s) 368
BsnI GGCC 3 cut(s) 71, 323, 525
Bsp1286I GDGCHC 1 cut(s) 200
Bsp143I GATC 3 cut(s) 334, 381, 636
Bsp19I CCATGG 1 cut(s) 572
BspACI CCGC 4 cut(s) 90, 92, 126, 687
BspANI GGCC 3 cut(s) 71, 323, 525
BspCNI CTCAG 1 cut(s) 235
BspFNI CGCG 1 cut(s) 92
BspHI TCATGA 1 cut(s) 393
BspLI GGNNCC 5 cut(s) 72, 138, 249, 526, 691
BspQI GCTCTTC 1 cut(s) 674
BspT107I GGYRCC 2 cut(s) 136, 689
BsrDI GCAATG 2 cut(s) 254, 430
BsrI ACTGG 2 cut(s) 436, 496
BssECI CCNNGG 2 cut(s) 90, 572
BssMI GATC 3 cut(s) 334, 381, 636
BssNI GRCGYC 2 cut(s) 137, 569
BssT1I CCWWGG 1 cut(s) 572
Bst2UI CCWGG 2 cut(s) 166, 498
Bst4CI ACNGT 3 cut(s) 220, 562, 668
Bst6I CTCTTC 2 cut(s) 203, 674
BstACI GRCGYC 2 cut(s) 137, 569
BstC8I GCNNGC 4 cut(s) 238, 261, 321, 523
BstDEI CTNAG 2 cut(s) 243, 506
BstDSI CCRYGG 2 cut(s) 90, 572
BstEII GGTNACC 1 cut(s) 662
BstF5I GGATG 1 cut(s) 86
BstFNI CGCG 1 cut(s) 92
BstH2I RGCGCY 2 cut(s) 140, 243
BstHHI GCGC 2 cut(s) 139, 242
BstKTI GATC 3 cut(s) 337, 384, 639
BstMAI GTCTC 1 cut(s) 644
BstMBI GATC 3 cut(s) 334, 381, 636
BstMWI GCNNNNNNNGC 3 cut(s) 45, 134, 260
BstNI CCWGG 2 cut(s) 166, 498
BstPI GGTNACC 1 cut(s) 662
BstSCI CCNGG 3 cut(s) 34, 164, 496
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 3 cut(s) 17, 159, 696
BstV2I GAAGAC 1 cut(s) 102
BsuRI GGCC 3 cut(s) 71, 323, 525
BtgI CCRYGG 2 cut(s) 90, 572
BtgZI GCGATG 1 cut(s) 12
BtsCI GGATG 1 cut(s) 86
Cac8I GCNNGC 4 cut(s) 238, 261, 321, 523
CciI TCATGA 1 cut(s) 393
CfoI GCGC 2 cut(s) 139, 242
Cfr13I GGNCC 5 cut(s) 70, 216, 229, 494, 524
Cfr42I CCGCGG 1 cut(s) 93
CpoI CGGWCCG 1 cut(s) 229
CseI GACGC 1 cut(s) 577
Csp6I GTAC 4 cut(s) 355, 429, 456, 563
CspI CGGWCCG 1 cut(s) 229
CviAII CATG 4 cut(s) 394, 511, 573, 619
CviQI GTAC 4 cut(s) 355, 429, 456, 563
DdeI CTNAG 2 cut(s) 243, 506
DinI GGCGCC 1 cut(s) 138
DpnI GATC 3 cut(s) 336, 383, 638
DpnII GATC 3 cut(s) 334, 381, 636
DraI TTTAAA 1 cut(s) 463
DraIII CACNNNGTG 1 cut(s) 595
EaeI YGGCCR 1 cut(s) 321
Eam1104I CTCTTC 2 cut(s) 203, 674
EarI CTCTTC 2 cut(s) 203, 674
Eco130I CCWWGG 1 cut(s) 572
Eco24I GRGCYC 1 cut(s) 200
Eco47I GGWCC 3 cut(s) 216, 229, 494
Eco47III AGCGCT 1 cut(s) 241
Eco91I GGTNACC 1 cut(s) 662
EcoO109I RGGNCCY 1 cut(s) 524
EcoO65I GGTNACC 1 cut(s) 662
EcoRII CCWGG 2 cut(s) 164, 496
EcoT14I CCWWGG 1 cut(s) 572
EcoT38I GRGCYC 1 cut(s) 200
EgeI GGCGCC 1 cut(s) 138
EheI GGCGCC 1 cut(s) 138
ErhI CCWWGG 1 cut(s) 572
FaeI CATG 4 cut(s) 397, 514, 576, 622
FaiI YATR 8 cut(s) 395, 450, 489, 512, 554, 556, 574, 620
FaqI GGGAC 2 cut(s) 166, 422
FatI CATG 4 cut(s) 393, 510, 572, 618
FauNDI CATATG 1 cut(s) 554
FbaI TGATCA 1 cut(s) 381
Fnu4HI GCNGC 5 cut(s) 6, 126, 173, 685, 688
FokI GGATG 1 cut(s) 73
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 5 cut(s) 6, 126, 173, 685, 688
FspBI CTAG 1 cut(s) 201
GlaI GCGC 2 cut(s) 138, 241
GluI GCNGC 5 cut(s) 6, 126, 173, 685, 688
GsuI CTGGAG 2 cut(s) 148, 453
HaeII RGCGCY 2 cut(s) 140, 243
HaeIII GGCC 3 cut(s) 71, 323, 525
HapII CCGG 3 cut(s) 35, 308, 324
HgaI GACGC 1 cut(s) 577
HhaI GCGC 2 cut(s) 139, 242
Hin1I GRCGYC 2 cut(s) 137, 569
Hin1II CATG 4 cut(s) 397, 514, 576, 622
Hin6I GCGC 2 cut(s) 137, 240
HinP1I GCGC 2 cut(s) 137, 240
HinfI GANTC 3 cut(s) 397, 641, 697
HpaII CCGG 3 cut(s) 35, 308, 324
HphI GGTGA 1 cut(s) 674
Hpy188III TCNNGA 1 cut(s) 394
Hpy99I CGWCG 1 cut(s) 151
HpyAV CCTTC 3 cut(s) 207, 321, 608
HpyCH4III ACNGT 3 cut(s) 220, 562, 668
HpyCH4IV ACGT 1 cut(s) 591
HpyCH4V TGCA 6 cut(s) 26, 98, 259, 368, 521, 558
HpyF10VI GCNNNNNNNGC 3 cut(s) 45, 134, 260
HpyF3I CTNAG 2 cut(s) 243, 506
HpySE526I ACGT 1 cut(s) 591
Hsp92I GRCGYC 2 cut(s) 137, 569
Hsp92II CATG 4 cut(s) 397, 514, 576, 622
HspAI GCGC 2 cut(s) 137, 240
KasI GGCGCC 1 cut(s) 136
Ksp22I TGATCA 1 cut(s) 381
KspI CCGCGG 1 cut(s) 93
Kzo9I GATC 3 cut(s) 334, 381, 636
LguI GCTCTTC 1 cut(s) 674
Lsp1109I GCAGC 3 cut(s) 17, 159, 696
LweI GCATC 1 cut(s) 35
MaeI CTAG 1 cut(s) 201
MaeII ACGT 1 cut(s) 591
MaeIII GTNAC 4 cut(s) 51, 80, 268, 662
MalI GATC 3 cut(s) 336, 383, 638
MboI GATC 3 cut(s) 334, 381, 636
MboII GAAGA 8 cut(s) 102, 105, 108, 111, 151, 220, 541, 691
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 1 cut(s) 624
Mly113I GGCGCC 1 cut(s) 137
MlyI GAGTC 1 cut(s) 650
MnlI CCTC 7 cut(s) 84, 197, 238, 398, 428, 579, 653
MseI TTAA 3 cut(s) 342, 462, 477
MspA1I CMGCKG 2 cut(s) 92, 687
MspI CCGG 3 cut(s) 35, 308, 324
MspR9I CCNGG 3 cut(s) 36, 166, 498
Mva1269I GAATGC 1 cut(s) 368
MvaI CCWGG 2 cut(s) 166, 498
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 3 cut(s) 45, 134, 260
NarI GGCGCC 1 cut(s) 137
NciI CCSGG 1 cut(s) 36
NcoI CCATGG 1 cut(s) 572
NdeI CATATG 1 cut(s) 554
NdeII GATC 3 cut(s) 334, 381, 636
NlaIII CATG 4 cut(s) 397, 514, 576, 622
NlaIV GGNNCC 5 cut(s) 72, 138, 249, 526, 691
NmuCI GTSAC 3 cut(s) 51, 268, 662
PagI TCATGA 1 cut(s) 393
PciSI GCTCTTC 1 cut(s) 674
PctI GAATGC 1 cut(s) 368
PfeI GAWTC 2 cut(s) 397, 697
PkrI GCNGC 5 cut(s) 7, 127, 174, 686, 689
PleI GAGTC 1 cut(s) 649
PluTI GGCGCC 1 cut(s) 140
PpsI GAGTC 1 cut(s) 649
Psp6I CCWGG 2 cut(s) 164, 496
PspEI GGTNACC 1 cut(s) 662
PspGI CCWGG 2 cut(s) 164, 496
PspN4I GGNNCC 5 cut(s) 72, 138, 249, 526, 691
PspPI GGNCC 5 cut(s) 70, 216, 229, 494, 524
RsaI GTAC 4 cut(s) 356, 430, 457, 564
RsaNI GTAC 4 cut(s) 355, 429, 456, 563
Rsr2I CGGWCCG 1 cut(s) 229
RsrII CGGWCCG 1 cut(s) 229
SacII CCGCGG 1 cut(s) 93
SapI GCTCTTC 1 cut(s) 674
SaqAI TTAA 3 cut(s) 342, 462, 477
SatI GCNGC 5 cut(s) 6, 126, 173, 685, 688
Sau3AI GATC 3 cut(s) 334, 381, 636
Sau96I GGNCC 5 cut(s) 70, 216, 229, 494, 524
SchI GAGTC 1 cut(s) 650
ScrFI CCNGG 3 cut(s) 36, 166, 498
SduI GDGCHC 1 cut(s) 200
SfaNI GCATC 1 cut(s) 35
SfoI GGCGCC 1 cut(s) 138
Sfr303I CCGCGG 1 cut(s) 93
SgrBI CCGCGG 1 cut(s) 93
SinI GGWCC 3 cut(s) 216, 229, 494
Sse9I AATT 1 cut(s) 624
SsiI CCGC 4 cut(s) 90, 92, 126, 687
SspDI GGCGCC 1 cut(s) 136
SspMI CTAG 1 cut(s) 201
StyD4I CCNGG 3 cut(s) 34, 164, 496
StyI CCWWGG 1 cut(s) 572
TaaI ACNGT 3 cut(s) 220, 562, 668
TaiI ACGT 1 cut(s) 594
TaqI TCGA 3 cut(s) 206, 414, 639
TaqII GACCGA 1 cut(s) 217
TasI AATT 1 cut(s) 624
TatI WGTACW 1 cut(s) 562
TauI GCSGC 2 cut(s) 128, 690
TfiI GAWTC 2 cut(s) 397, 697
Tru1I TTAA 3 cut(s) 342, 462, 477
Tru9I TTAA 3 cut(s) 342, 462, 477
TseFI GTSAC 3 cut(s) 51, 268, 662
TseI GCWGC 3 cut(s) 5, 172, 684
Tsp45I GTSAC 3 cut(s) 51, 268, 662
TspDTI ATGAA 3 cut(s) 382, 476, 541
TspGWI ACGGA 3 cut(s) 66, 96, 221
VpaK11BI GGWCC 3 cut(s) 216, 229, 494
XspI CTAG 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.