MD15G1288900.v1.1

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
26709233 .. 26710174
942 bp
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UTR
Exon/CDS
Intron
MD15G1288900.v1.1.491

Sequence Viewer

Length: 342 bp
ATGATACAAGGTGGAGACATTTCGGCTGGAAATGGCAGTGGGGGAGAGTCAATTTACGGGTTGAAGTTTGAAGATGAAAACTTTGACATAAAGCATGAGAGAAAAGGAATGTTGTCTATGGCTAATAAAGGCACTGACACCAATGGCTCTCAGTTTTTCATTACCACCACTTGGACTTCCCATCTTGATGGGAAGCATGTTGCTTTTGGGAAGGTGATCAAGGGCATGGGTGTGGTTCATTCAGTTGAGCATGTGAACACGAAAGGAGGAGACTTGCCTATCCAAGAAGTCGTTATTGAGGATTGTGGGCAGCTTCTTGAGGGAGCAGATGATGGGGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

114

Amino Acids

12.01

Weight (kDa)

4.88

Isoelectric Point (pI)

8.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 1 - 103 3.4e-29 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 171
AfiI CCNNNNNNNGG 1 cut(s) 171
AgsI TTSAA 2 cut(s) 64, 71
AluBI AGCT 1 cut(s) 313
AluI AGCT 1 cut(s) 313
Alw26I GTCTC 2 cut(s) 9, 264
ApeKI GCWGC 1 cut(s) 310
AsuHPI GGTGA 1 cut(s) 226
BbvI GCAGC 1 cut(s) 322
BccI CCATC 3 cut(s) 182, 189, 326
BclI TGATCA 1 cut(s) 216
BcoDI GTCTC 2 cut(s) 9, 264
BisI GCNGC 1 cut(s) 311
BlsI GCNGC 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 338
Bsc4I CCNNNNNNNGG 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 171
BseMII CTCAG 1 cut(s) 164
BseRI GAGGAG 1 cut(s) 282
BseXI GCAGC 1 cut(s) 322
BslI CCNNNNNNNGG 1 cut(s) 171
BsmAI GTCTC 2 cut(s) 9, 264
Bsp143I GATC 1 cut(s) 216
BspCNI CTCAG 1 cut(s) 163
BssMI GATC 1 cut(s) 216
BstDEI CTNAG 1 cut(s) 150
BstKTI GATC 1 cut(s) 219
BstMAI GTCTC 2 cut(s) 9, 264
BstMBI GATC 1 cut(s) 216
BstNSI RCATGY 2 cut(s) 200, 254
BstV1I GCAGC 1 cut(s) 322
BstXI CCANNNNNNTGG 1 cut(s) 188
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 2 cut(s) 43, 132
CviAII CATG 4 cut(s) 95, 197, 226, 251
CviJI RGCY 4 cut(s) 26, 122, 147, 313
CviKI_1 RGCY 4 cut(s) 26, 122, 147, 313
DdeI CTNAG 1 cut(s) 150
DpnI GATC 1 cut(s) 218
DpnII GATC 1 cut(s) 216
FaeI CATG 4 cut(s) 98, 200, 229, 254
FaiI YATR 6 cut(s) 89, 96, 119, 198, 227, 252
FatI CATG 4 cut(s) 94, 196, 225, 250
FbaI TGATCA 1 cut(s) 216
Fnu4HI GCNGC 1 cut(s) 311
Fsp4HI GCNGC 1 cut(s) 311
GluI GCNGC 1 cut(s) 311
Hin1II CATG 4 cut(s) 98, 200, 229, 254
HinfI GANTC 1 cut(s) 47
HphI GGTGA 1 cut(s) 226
Hpy166II GTNNAC 1 cut(s) 256
Hpy188III TCNNGA 2 cut(s) 185, 317
Hpy8I GTNNAC 1 cut(s) 256
HpyAV CCTTC 1 cut(s) 205
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 4 cut(s) 98, 200, 229, 254
Ksp22I TGATCA 1 cut(s) 216
Kzo9I GATC 1 cut(s) 216
LmnI GCTCC 1 cut(s) 323
LpnPI CCDG 1 cut(s) 12
Lsp1109I GCAGC 1 cut(s) 322
MalI GATC 1 cut(s) 218
MboI GATC 1 cut(s) 216
MboII GAAGA 1 cut(s) 83
MluCI AATT 1 cut(s) 51
MlyI GAGTC 1 cut(s) 56
MnlI CCTC 3 cut(s) 260, 292, 313
MslI CAYNNNNRTG 2 cut(s) 186, 230
NdeII GATC 1 cut(s) 216
NlaIII CATG 4 cut(s) 98, 200, 229, 254
NspI RCATGY 2 cut(s) 200, 254
PflMI CCANNNNNTGG 1 cut(s) 171
PkrI GCNGC 1 cut(s) 312
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
RseI CAYNNNNRTG 2 cut(s) 186, 230
SatI GCNGC 1 cut(s) 311
Sau3AI GATC 1 cut(s) 216
SchI GAGTC 1 cut(s) 56
SetI ASST 3 cut(s) 13, 216, 315
SmiMI CAYNNNNRTG 2 cut(s) 186, 230
SmlI CTYRAG 1 cut(s) 317
SmoI CTYRAG 1 cut(s) 317
Sse9I AATT 1 cut(s) 51
TasI AATT 1 cut(s) 51
TscAI CASTG 2 cut(s) 43, 139
TseI GCWGC 1 cut(s) 310
TspDTI ATGAA 3 cut(s) 90, 148, 227
TspRI CASTG 2 cut(s) 43, 139
Van91I CCANNNNNTGG 1 cut(s) 171
XceI RCATGY 2 cut(s) 200, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.