Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001652

Physical Location & Seq

Genomic Coordinates Reverse (-)

59758312 .. 59758723

Gene Structure 412 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG363000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGGCAAATTCTGGCCAAGACACCAATGGATCACAGTTCTTCATCACGACTGTCAAAACTAGCTGGTCGGATGGTCACCATGTTGTATTTGGCAAGGTGCTTTCTGGAATGGACGTTGAGTACAAGGTTGAACGAGTAGGAGGATCGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005783 GO:0005794 GO:0005795 GO:0005802 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0031410 GO:0031982 GO:0031984 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0097708 GO:0098791 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

50

Amino Acids

5.41

Weight (kDa)

5.43

Isoelectric Point (pI)

4.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	1 - 46	7.9e-15	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0001652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13120 AT5G13120
fragaria_vesca	FvH4_4g23300
malus_domestica	MD13G1123100.v1.1 MD15G1288900.v1.1 MD16G1123800.v1.1
prunus_persica	Prupe.1G221800_v2.0.a1 Prupe.1G221800_v2.0.a1 Prupe.1G221800_v2.0.a1
pyrus_communis	pycom03g09380 pycom07g05330 pycom07g05380 pycom13g10750 pycom15g24270 pycom16g10580
rosa_chinensis	RchiOBHm_Chr4g0429661 RchiOBHm_Chr5g0043491 RchiOBHm_Chr5g0043561 RchiOBHm_Chr6g0254041 RchiOBHm_Chr7g0205991
rosa_laevigata	RLG00000007054
rosa_multiflora	Rmu_co8235611.1_g000001 Rmu_sc0006590.1_g000005 Rmu_sc0010349.1_g000005 Rmu_sc0024031.1_g000001
rosa_roxburghii	Rroxscaffold_180G00433360 Rroxscaffold_2G00113860 Rroxscaffold_4G00286780 Rroxscaffold_5G00371340
rosa_rugosa	Rorug01G0354400 Rorug04G0237500
rosa_samantha	Rh1AG363000 Rh2AG208100 Rh2BG430300 Rh4AG293600 Rh4BG299400 Rh4CG315200 Rh4DG296500 Rh5AG191200 Rh5BG299100 Rh6CG120300 Rh6DG108100 Rh7AG305600 Rh7CG324700
rosa_wichuraiana	Rw2G028480 Rw4G025410 Rw5G017430 Rw6G019830 Rw7G028310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	37, 151
AcoI	YGGCCR	1 cut(s)	13
AcsI	RAATTY	1 cut(s)	7
AfaI	GTAC	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	131
AluBI	AGCT	1 cut(s)	63
AluI	AGCT	1 cut(s)	63
AlwI	GGATC	2 cut(s)	37, 151
AoxI	GGCC	1 cut(s)	13
ApoI	RAATTY	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	68
BalI	TGGCCA	1 cut(s)	15
BccI	CCATC	1 cut(s)	65
BfaI	CTAG	1 cut(s)	60
BseGI	GGATG	1 cut(s)	76
BshFI	GGCC	1 cut(s)	15
BsnI	GGCC	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	29, 143
BspANI	GGCC	1 cut(s)	15
BspPI	GGATC	2 cut(s)	37, 151
BssMI	GATC	2 cut(s)	29, 143
Bst4CI	ACNGT	2 cut(s)	36, 52
BstEII	GGTNACC	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	76
BstKTI	GATC	2 cut(s)	32, 146
BstMBI	GATC	2 cut(s)	29, 143
BstPI	GGTNACC	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	2 cut(s)	15, 63
CviKI_1	RGCY	2 cut(s)	15, 63
CviQI	GTAC	1 cut(s)	121
DpnI	GATC	2 cut(s)	31, 145
DpnII	GATC	2 cut(s)	29, 143
EaeI	YGGCCR	1 cut(s)	13
Eco91I	GGTNACC	1 cut(s)	74
EcoO65I	GGTNACC	1 cut(s)	74
FaeI	CATG	1 cut(s)	83
FaiI	YATR	1 cut(s)	81
FatI	CATG	1 cut(s)	79
FokI	GGATG	1 cut(s)	83
FspBI	CTAG	1 cut(s)	60
HaeIII	GGCC	1 cut(s)	15
Hin1II	CATG	1 cut(s)	83
HphI	GGTGA	1 cut(s)	68
Hpy188I	TCNGA	2 cut(s)	70, 148
Hpy188III	TCNNGA	2 cut(s)	46, 105
HpyCH4III	ACNGT	2 cut(s)	36, 52
HpyCH4IV	ACGT	1 cut(s)	114
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	83
Kzo9I	GATC	2 cut(s)	29, 143
LpnPI	CCDG	2 cut(s)	49, 90
MaeI	CTAG	1 cut(s)	60
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	2 cut(s)	31, 145
MboI	GATC	2 cut(s)	29, 143
MboII	GAAGA	1 cut(s)	31
MlsI	TGGCCA	1 cut(s)	15
MluCI	AATT	1 cut(s)	7
MluNI	TGGCCA	1 cut(s)	15
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	1 cut(s)	134
Mox20I	TGGCCA	1 cut(s)	15
MscI	TGGCCA	1 cut(s)	15
Msp20I	TGGCCA	1 cut(s)	15
NdeII	GATC	2 cut(s)	29, 143
NlaIII	CATG	1 cut(s)	83
NmuCI	GTSAC	1 cut(s)	74
PspEI	GGTNACC	1 cut(s)	74
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
Sau3AI	GATC	2 cut(s)	29, 143
SetI	ASST	4 cut(s)	65, 99, 117, 129
Sse9I	AATT	1 cut(s)	7
SspMI	CTAG	1 cut(s)	60
TaaI	ACNGT	2 cut(s)	36, 52
TaiI	ACGT	1 cut(s)	117
TasI	AATT	1 cut(s)	7
TatI	WGTACW	1 cut(s)	120
TseFI	GTSAC	1 cut(s)	74
Tsp45I	GTSAC	1 cut(s)	74
TspDTI	ATGAA	1 cut(s)	31
XapI	RAATTY	1 cut(s)	7
XcmI	CCANNNNNNNNNTGG	2 cut(s)	23, 86
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.