RchiOBHm_Chr7g0205991

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0001652
Physical Location & Seq
Forward (+)
23667623 .. 23670447
2825 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18433

Sequence Viewer

Length: 342 bp
ATGATTCAAGGAGGGGACTTCGATAAGGGCAATAGTTCTGTGAAGGTACTGGAGGCAAAAGCATTTATGGGCGTACATTTAAAGATGAGAACTTTAAGTTGCTTCATACTGGACCAGGAGTTCTTAATTAGCATGGCAAATGCAGGCCCCAATACCAATGGAAGTCAATTCTTCATATGCACAGTACAAACGCCATGGCTAAATGGGAGGCACGTTGTGTTTGGGCAAGTTTTGGAAGGCATGGAAATTGTTAGGCTGATCGAGTCGCAGGAGACAGATAGAGGTGACCGTCCTACAAAGAAGGTAGTCATTGCTGACTGCGGAGAGCTTCCAGTAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

113

Amino Acids

12.43

Weight (kDa)

5.6

Isoelectric Point (pI)

30.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 1 - 108 1.5e-25 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 321
AdeI CACNNNGTG 1 cut(s) 217
AfaI GTAC 3 cut(s) 48, 75, 186
AgsI TTSAA 1 cut(s) 8
AjnI CCWGG 1 cut(s) 114
AloI GAACNNNNNNTCC 2 cut(s) 104, 136
AluBI AGCT 1 cut(s) 328
AluI AGCT 1 cut(s) 328
Alw26I GTCTC 1 cut(s) 266
AoxI GGCC 1 cut(s) 145
AspS9I GGNCC 2 cut(s) 112, 146
AsuHPI GGTGA 1 cut(s) 296
AvaII GGWCC 1 cut(s) 112
BciT130I CCWGG 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 266
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 2 cut(s) 112, 146
BmiI GGNNCC 1 cut(s) 148
BmrFI CCNGG 1 cut(s) 116
BpmI CTGGAG 1 cut(s) 71
BsaJI CCNNGG 1 cut(s) 194
Bse1I ACTGG 3 cut(s) 54, 114, 332
Bse3DI GCAATG 1 cut(s) 309
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 194
BseMI GCAATG 1 cut(s) 309
BseNI ACTGG 3 cut(s) 54, 114, 332
BshFI GGCC 1 cut(s) 147
BslFI GGGAC 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 29
BsnI GGCC 1 cut(s) 147
Bsp143I GATC 1 cut(s) 258
Bsp19I CCATGG 1 cut(s) 194
BspACI CCGC 1 cut(s) 321
BspANI GGCC 1 cut(s) 147
BspLI GGNNCC 1 cut(s) 148
BsrDI GCAATG 1 cut(s) 309
BsrI ACTGG 3 cut(s) 54, 114, 332
BssECI CCNNGG 1 cut(s) 194
BssMI GATC 1 cut(s) 258
BssT1I CCWWGG 1 cut(s) 194
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 184, 290
BstC8I GCNNGC 1 cut(s) 145
BstDSI CCRYGG 1 cut(s) 194
BstEII GGTNACC 1 cut(s) 284
BstKTI GATC 1 cut(s) 261
BstMAI GTCTC 1 cut(s) 266
BstMBI GATC 1 cut(s) 258
BstNI CCWGG 1 cut(s) 116
BstPI GGTNACC 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 114
BsuRI GGCC 1 cut(s) 147
BtgI CCRYGG 1 cut(s) 194
Cac8I GCNNGC 1 cut(s) 145
Cfr13I GGNCC 2 cut(s) 112, 146
Csp6I GTAC 3 cut(s) 47, 74, 185
CviAII CATG 3 cut(s) 133, 195, 241
CviJI RGCY 5 cut(s) 147, 199, 256, 328, 338
CviKI_1 RGCY 5 cut(s) 147, 199, 256, 328, 338
CviQI GTAC 3 cut(s) 47, 74, 185
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
DraI TTTAAA 1 cut(s) 81
DraIII CACNNNGTG 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 112
Eco91I GGTNACC 1 cut(s) 284
EcoO109I RGGNCCY 1 cut(s) 146
EcoO65I GGTNACC 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 114
EcoT14I CCWWGG 1 cut(s) 194
ErhI CCWWGG 1 cut(s) 194
FaeI CATG 3 cut(s) 136, 198, 244
FaiI YATR 7 cut(s) 68, 107, 134, 176, 178, 196, 242
FaqI GGGAC 1 cut(s) 29
FatI CATG 3 cut(s) 132, 194, 240
FauNDI CATATG 1 cut(s) 176
GsuI CTGGAG 1 cut(s) 71
HaeIII GGCC 1 cut(s) 147
Hin1II CATG 3 cut(s) 136, 198, 244
HinfI GANTC 2 cut(s) 4, 263
HphI GGTGA 1 cut(s) 296
HpyAV CCTTC 3 cut(s) 37, 230, 295
HpyCH4III ACNGT 2 cut(s) 184, 290
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 2 cut(s) 143, 180
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 3 cut(s) 136, 198, 244
Kzo9I GATC 1 cut(s) 258
LpnPI CCDG 6 cut(s) 35, 95, 101, 128, 129, 254
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 284
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MboII GAAGA 1 cut(s) 163
MluCI AATT 3 cut(s) 126, 167, 246
MlyI GAGTC 1 cut(s) 272
MnlI CCTC 4 cut(s) 5, 46, 201, 275
MseI TTAA 3 cut(s) 80, 95, 125
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
NcoI CCATGG 1 cut(s) 194
NdeI CATATG 1 cut(s) 176
NdeII GATC 1 cut(s) 258
NlaIII CATG 3 cut(s) 136, 198, 244
NlaIV GGNNCC 1 cut(s) 148
NmuCI GTSAC 1 cut(s) 284
PfeI GAWTC 1 cut(s) 4
PleI GAGTC 1 cut(s) 271
PpsI GAGTC 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 114
PspEI GGTNACC 1 cut(s) 284
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 148
PspPI GGNCC 2 cut(s) 112, 146
RsaI GTAC 3 cut(s) 48, 75, 186
RsaNI GTAC 3 cut(s) 47, 74, 185
SaqAI TTAA 3 cut(s) 80, 95, 125
Sau3AI GATC 1 cut(s) 258
Sau96I GGNCC 2 cut(s) 112, 146
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 1 cut(s) 116
SetI ASST 5 cut(s) 48, 216, 286, 306, 330
SinI GGWCC 1 cut(s) 112
Sse9I AATT 3 cut(s) 126, 167, 246
SsiI CCGC 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 114
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 2 cut(s) 184, 290
TaiI ACGT 1 cut(s) 216
TaqI TCGA 2 cut(s) 21, 261
TasI AATT 3 cut(s) 126, 167, 246
TatI WGTACW 1 cut(s) 184
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 3 cut(s) 80, 95, 125
Tru9I TTAA 3 cut(s) 80, 95, 125
TseFI GTSAC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 2 cut(s) 94, 163
VpaK11BI GGWCC 1 cut(s) 112
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.