Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0007141

Physical Location & Seq

Genomic Coordinates Forward (+)

61335725 .. 61336737

Gene Structure 1013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG339400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGACCACTCGCGAATCCTCCTCCGGACTCGACTCTTCGAGCATGGGCGATCAACCCACCAAACGCACCGTTTCACTTGATCCGGAACCCGAACCCGGACCCGGCGGCGAGGTCTGGGTCGAAAACTTCAACCGCAGCTTCCGCCAGGTCCAGGCCGTCCTCGACCGCAACCGCGCTCTGATCCAGCAAGTCAACGACAACCACCAGAGCGCTGCGAGCCCAACAACTAGTCCGTCCGTCGGCGTTTTTCTAAGAGGATTACAGTGCAACTGCTTTCCTGTTGAACCTGCCAAACTAAAGACGAGGTCAACACGGAATGTTCAGATGAGTAGCTTTGTTATTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009639 GO:0009648 GO:0009649 GO:0009791 GO:0009909 GO:0009987 GO:0010017 GO:0010114 GO:0010228 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0042752 GO:0042753 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048518 GO:0048573 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080167 GO:0104004 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1313

Protein Analysis

115

Amino Acids

12.58

Weight (kDa)

7.83

Isoelectric Point (pI)

66.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Elf4	PF07011	38 - 81	3.1e-14	Early Flowering 4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40080
fragaria_vesca	FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450
malus_domestica	MD01G1152700.v1.1
prunus_persica	Prupe.2G249800_v2.0.a1
pyrus_communis	pycom07g20010
rosa_chinensis	RchiOBHm_Chr1g0370131
rosa_laevigata	RLG00000027071
rosa_multiflora	Rmu_sc0005056.1_g000001 Rmu_sc0011509.1_g000004
rosa_roxburghii	Rroxscaffold_4G00286790
rosa_rugosa	Rorug01G0354400
rosa_samantha	Rh1AG362900 Rh1BG326100 Rh1CG339400 Rh1DG356600
rosa_wichuraiana	Rw1G031940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	295
AccII	CGCG	2 cut(s)	12, 174
AccIII	TCCGGA	2 cut(s)	23, 82
AciI	CCGC	5 cut(s)	105, 133, 142, 166, 172
AclWI	GGATC	2 cut(s)	74, 175
AfeI	AGCGCT	1 cut(s)	211
AfiI	CCNNNNNNNGG	4 cut(s)	95, 101, 151, 239
AgsI	TTSAA	2 cut(s)	130, 284
AhlI	ACTAGT	1 cut(s)	227
AjnI	CCWGG	2 cut(s)	144, 150
AluBI	AGCT	2 cut(s)	138, 333
AluI	AGCT	2 cut(s)	138, 333
AlwI	GGATC	2 cut(s)	74, 175
Aor13HI	TCCGGA	2 cut(s)	23, 82
Aor51HI	AGCGCT	1 cut(s)	211
AoxI	GGCC	1 cut(s)	153
ApeKI	GCWGC	2 cut(s)	135, 212
AspLEI	GCGC	2 cut(s)	176, 212
AspS9I	GGNCC	2 cut(s)	98, 148
AsuC2I	CCSGG	2 cut(s)	96, 102
AvaII	GGWCC	2 cut(s)	98, 148
BanII	GRGCYC	1 cut(s)	221
BbvI	GCAGC	2 cut(s)	147, 199
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	2 cut(s)	146, 152
BcnI	CCSGG	2 cut(s)	96, 102
BcuI	ACTAGT	1 cut(s)	227
BfaI	CTAG	1 cut(s)	228
BfoI	RGCGCY	1 cut(s)	213
BfuAI	ACCTGC	1 cut(s)	295
BisI	GCNGC	3 cut(s)	106, 136, 213
BlsI	GCNGC	3 cut(s)	107, 137, 214
Bme1390I	CCNGG	4 cut(s)	96, 102, 146, 152
Bme18I	GGWCC	2 cut(s)	98, 148
BmgT120I	GGNCC	2 cut(s)	98, 148
BmiI	GGNNCC	2 cut(s)	87, 100
BmrFI	CCNGG	4 cut(s)	96, 102, 146, 152
BpuMI	CCSGG	2 cut(s)	96, 102
BsaWI	WCCGGW	2 cut(s)	23, 82
Bsc4I	CCNNNNNNNGG	4 cut(s)	95, 101, 151, 239
BseAI	TCCGGA	2 cut(s)	23, 82
BseBI	CCWGG	2 cut(s)	146, 152
BseLI	CCNNNNNNNGG	4 cut(s)	95, 101, 151, 239
BseRI	GAGGAG	1 cut(s)	10
BseXI	GCAGC	2 cut(s)	147, 199
Bsh1236I	CGCG	2 cut(s)	12, 174
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	1 cut(s)	155
BsiEI	CGRYCG	1 cut(s)	166
BsiSI	CCGG	4 cut(s)	24, 83, 96, 102
BslI	CCNNNNNNNGG	4 cut(s)	95, 101, 151, 239
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp13I	TCCGGA	2 cut(s)	23, 82
Bsp143I	GATC	3 cut(s)	49, 79, 180
Bsp68I	TCGCGA	1 cut(s)	12
BspACI	CCGC	5 cut(s)	105, 133, 142, 166, 172
BspANI	GGCC	1 cut(s)	155
BspEI	TCCGGA	2 cut(s)	23, 82
BspFNI	CGCG	2 cut(s)	12, 174
BspLI	GGNNCC	2 cut(s)	87, 100
BspMI	ACCTGC	1 cut(s)	295
BspPI	GGATC	2 cut(s)	74, 175
BssMI	GATC	3 cut(s)	49, 79, 180
Bst2UI	CCWGG	2 cut(s)	146, 152
Bst4CI	ACNGT	2 cut(s)	70, 264
Bst6I	CTCTTC	1 cut(s)	40
BstC8I	GCNNGC	1 cut(s)	217
BstDEI	CTNAG	1 cut(s)	251
BstFNI	CGCG	2 cut(s)	12, 174
BstH2I	RGCGCY	1 cut(s)	213
BstHHI	GCGC	2 cut(s)	176, 212
BstKTI	GATC	3 cut(s)	52, 82, 183
BstMBI	GATC	3 cut(s)	49, 79, 180
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 216
BstNI	CCWGG	2 cut(s)	146, 152
BstSCI	CCNGG	4 cut(s)	94, 100, 144, 150
BstUI	CGCG	2 cut(s)	12, 174
BstV1I	GCAGC	2 cut(s)	147, 199
BsuRI	GGCC	1 cut(s)	155
BtsIMutI	CAGTG	1 cut(s)	269
BtuMI	TCGCGA	1 cut(s)	12
BveI	ACCTGC	1 cut(s)	295
Cac8I	GCNNGC	1 cut(s)	217
CfoI	GCGC	2 cut(s)	176, 212
Cfr13I	GGNCC	2 cut(s)	98, 148
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	4 cut(s)	138, 155, 219, 333
CviKI_1	RGCY	4 cut(s)	138, 155, 219, 333
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	3 cut(s)	51, 81, 182
DpnII	GATC	3 cut(s)	49, 79, 180
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
EciI	GGCGGA	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	221
Eco47I	GGWCC	2 cut(s)	98, 148
Eco47III	AGCGCT	1 cut(s)	211
EcoRII	CCWGG	2 cut(s)	144, 150
EcoT38I	GRGCYC	1 cut(s)	221
FaeI	CATG	1 cut(s)	46
FaiI	YATR	1 cut(s)	44
FatI	CATG	1 cut(s)	42
Fnu4HI	GCNGC	3 cut(s)	106, 136, 213
FriOI	GRGCYC	1 cut(s)	221
Fsp4HI	GCNGC	3 cut(s)	106, 136, 213
FspBI	CTAG	1 cut(s)	228
GlaI	GCGC	2 cut(s)	175, 211
GluI	GCNGC	3 cut(s)	106, 136, 213
HaeII	RGCGCY	1 cut(s)	213
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	4 cut(s)	24, 83, 96, 102
HhaI	GCGC	2 cut(s)	176, 212
Hin1II	CATG	1 cut(s)	46
Hin6I	GCGC	2 cut(s)	174, 210
HinP1I	GCGC	2 cut(s)	174, 210
HincII	GTYRAC	2 cut(s)	193, 309
HindII	GTYRAC	2 cut(s)	193, 309
HinfI	GANTC	3 cut(s)	14, 27, 32
HpaII	CCGG	4 cut(s)	24, 83, 96, 102
Hpy166II	GTNNAC	2 cut(s)	193, 309
Hpy188I	TCNGA	2 cut(s)	180, 324
Hpy188III	TCNNGA	3 cut(s)	11, 24, 83
Hpy8I	GTNNAC	2 cut(s)	193, 309
Hpy99I	CGWCG	1 cut(s)	242
HpyCH4III	ACNGT	2 cut(s)	70, 264
HpyCH4V	TGCA	1 cut(s)	267
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 216
HpyF3I	CTNAG	1 cut(s)	251
Hsp92II	CATG	1 cut(s)	46
HspAI	GCGC	2 cut(s)	174, 210
Kpn2I	TCCGGA	2 cut(s)	23, 82
Kzo9I	GATC	3 cut(s)	49, 79, 180
Lsp1109I	GCAGC	2 cut(s)	147, 199
MaeI	CTAG	1 cut(s)	228
MalI	GATC	3 cut(s)	51, 81, 182
MboI	GATC	3 cut(s)	49, 79, 180
MboII	GAAGA	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	221
MlyI	GAGTC	2 cut(s)	21, 26
MnlI	CCTC	6 cut(s)	28, 31, 103, 170, 248, 297
MroI	TCCGGA	2 cut(s)	23, 82
MspI	CCGG	4 cut(s)	24, 83, 96, 102
MspR9I	CCNGG	4 cut(s)	96, 102, 146, 152
MvaI	CCWGG	2 cut(s)	146, 152
MvnI	CGCG	2 cut(s)	12, 174
MwoI	GCNNNNNNNGC	2 cut(s)	141, 216
NciI	CCSGG	2 cut(s)	96, 102
NdeII	GATC	3 cut(s)	49, 79, 180
NlaIII	CATG	1 cut(s)	46
NlaIV	GGNNCC	2 cut(s)	87, 100
NruI	TCGCGA	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	14
PflFI	GACNNNGTC	1 cut(s)	304
PkrI	GCNGC	3 cut(s)	107, 137, 214
PleI	GAGTC	2 cut(s)	21, 26
PpsI	GAGTC	2 cut(s)	21, 26
Psp6I	CCWGG	2 cut(s)	144, 150
PspGI	CCWGG	2 cut(s)	144, 150
PspN4I	GGNNCC	2 cut(s)	87, 100
PspPI	GGNCC	2 cut(s)	98, 148
PsyI	GACNNNGTC	1 cut(s)	304
RruI	TCGCGA	1 cut(s)	12
SatI	GCNGC	3 cut(s)	106, 136, 213
Sau3AI	GATC	3 cut(s)	49, 79, 180
Sau96I	GGNCC	2 cut(s)	98, 148
SchI	GAGTC	2 cut(s)	21, 26
ScrFI	CCNGG	4 cut(s)	96, 102, 146, 152
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	6 cut(s)	114, 140, 150, 289, 308, 335
SinI	GGWCC	2 cut(s)	98, 148
SpeI	ACTAGT	1 cut(s)	227
SsiI	CCGC	5 cut(s)	105, 133, 142, 166, 172
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	4 cut(s)	94, 100, 144, 150
TaaI	ACNGT	2 cut(s)	70, 264
TaqI	TCGA	4 cut(s)	30, 38, 120, 162
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	14
TscAI	CASTG	1 cut(s)	269
TseI	GCWGC	2 cut(s)	135, 212
TspGWI	ACGGA	3 cut(s)	222, 226, 328
TspRI	CASTG	1 cut(s)	269
Tth111I	GACNNNGTC	1 cut(s)	304
VpaK11BI	GGWCC	2 cut(s)	98, 148
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.