Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0007141

Physical Location & Seq

Genomic Coordinates Forward (+)

57999985 .. 58001638

Gene Structure 1654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG356600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGACCACTCGCGAATCCTCCTCCGGACTCGACTCTTCGAGCATGGGCGATCAACCCACCAAACGCACCGTTTCACTTGATCCGGAACCCGAACCCGGACCCGGCGGCGAGGTCTGGGTCGAAAACTTCAACCGCAGCTTCCGCCAGGTCCAGGCCGTCCTCGACCGCAACCGCGCTCTGATCCAGCAAGTCAACGACAACCACCAGTCCCGGGTTCCGGCCAACATGGTCAAGAACATCGCCCTCATCCAGGAAATCAACGCCAACATCCGCAAGGTCGTCTCGCTCTACTCCGACCTGTCCTCCGATTTCTCTACCGTCTTTCCCAACAAGGAGCGCTGCGAGCCCAACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009639 GO:0009648 GO:0009649 GO:0009791 GO:0009909 GO:0009987 GO:0010017 GO:0010114 GO:0010228 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0042752 GO:0042753 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048518 GO:0048573 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080167 GO:0104004 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1313

Protein Analysis

118

Amino Acids

13.2

Weight (kDa)

5.36

Isoelectric Point (pI)

59.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Elf4	PF07011	38 - 112	1.8e-36	Early Flowering 4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40080
fragaria_vesca	FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450
malus_domestica	MD01G1152700.v1.1
prunus_persica	Prupe.2G249800_v2.0.a1
pyrus_communis	pycom07g20010
rosa_chinensis	RchiOBHm_Chr1g0370131
rosa_laevigata	RLG00000027071
rosa_multiflora	Rmu_sc0005056.1_g000001 Rmu_sc0011509.1_g000004
rosa_roxburghii	Rroxscaffold_4G00286790
rosa_rugosa	Rorug01G0354400
rosa_samantha	Rh1AG362900 Rh1BG326100 Rh1CG339400 Rh1DG356600
rosa_wichuraiana	Rw1G031940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	12, 174
AccIII	TCCGGA	2 cut(s)	23, 82
AciI	CCGC	6 cut(s)	105, 133, 142, 166, 172, 271
AclWI	GGATC	2 cut(s)	74, 175
AcoI	YGGCCR	1 cut(s)	219
AfeI	AGCGCT	1 cut(s)	338
AfiI	CCNNNNNNNGG	6 cut(s)	95, 101, 151, 211, 217, 250
AgsI	TTSAA	1 cut(s)	130
AjnI	CCWGG	3 cut(s)	144, 150, 249
AluBI	AGCT	1 cut(s)	138
AluI	AGCT	1 cut(s)	138
Alw26I	GTCTC	1 cut(s)	286
AlwI	GGATC	2 cut(s)	74, 175
Ama87I	CYCGRG	1 cut(s)	210
Aor13HI	TCCGGA	2 cut(s)	23, 82
Aor51HI	AGCGCT	1 cut(s)	338
AoxI	GGCC	2 cut(s)	153, 219
ApeKI	GCWGC	2 cut(s)	135, 339
AspLEI	GCGC	2 cut(s)	176, 339
AspS9I	GGNCC	2 cut(s)	98, 148
AsuC2I	CCSGG	4 cut(s)	96, 102, 211, 212
AvaI	CYCGRG	1 cut(s)	210
AvaII	GGWCC	2 cut(s)	98, 148
BanII	GRGCYC	1 cut(s)	348
BbvI	GCAGC	2 cut(s)	147, 326
BceAI	ACGGC	1 cut(s)	140
BciT130I	CCWGG	3 cut(s)	146, 152, 251
BcnI	CCSGG	4 cut(s)	96, 102, 211, 212
BcoDI	GTCTC	1 cut(s)	286
BfaI	CTAG	1 cut(s)	355
BfoI	RGCGCY	1 cut(s)	340
BisI	GCNGC	3 cut(s)	106, 136, 340
BlsI	GCNGC	3 cut(s)	107, 137, 341
Bme1390I	CCNGG	7 cut(s)	96, 102, 146, 152, 211, 212, 251
Bme18I	GGWCC	2 cut(s)	98, 148
BmeT110I	CYCGRG	1 cut(s)	210
BmgT120I	GGNCC	2 cut(s)	98, 148
BmiI	GGNNCC	3 cut(s)	87, 100, 216
BmrFI	CCNGG	7 cut(s)	96, 102, 146, 152, 211, 212, 251
BpuMI	CCSGG	4 cut(s)	96, 102, 211, 212
BsaJI	CCNNGG	1 cut(s)	210
BsaWI	WCCGGW	2 cut(s)	23, 82
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	6 cut(s)	95, 101, 151, 211, 217, 250
Bse1I	ACTGG	1 cut(s)	205
BseAI	TCCGGA	2 cut(s)	23, 82
BseBI	CCWGG	3 cut(s)	146, 152, 251
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	2 cut(s)	246, 267
BseLI	CCNNNNNNNGG	6 cut(s)	95, 101, 151, 211, 217, 250
BseNI	ACTGG	1 cut(s)	205
BseRI	GAGGAG	1 cut(s)	10
BseXI	GCAGC	2 cut(s)	147, 326
Bsh1236I	CGCG	2 cut(s)	12, 174
Bsh1285I	CGRYCG	1 cut(s)	166
BshFI	GGCC	2 cut(s)	155, 221
BsiEI	CGRYCG	1 cut(s)	166
BsiHKCI	CYCGRG	1 cut(s)	210
BsiSI	CCGG	6 cut(s)	24, 83, 96, 102, 211, 218
BslFI	GGGAC	1 cut(s)	193
BslI	CCNNNNNNNGG	6 cut(s)	95, 101, 151, 211, 217, 250
BsmAI	GTCTC	1 cut(s)	286
BsmBI	CGTCTC	1 cut(s)	286
BsmFI	GGGAC	1 cut(s)	193
BsnI	GGCC	2 cut(s)	155, 221
BsoBI	CYCGRG	1 cut(s)	210
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp13I	TCCGGA	2 cut(s)	23, 82
Bsp143I	GATC	3 cut(s)	49, 79, 180
Bsp68I	TCGCGA	1 cut(s)	12
BspACI	CCGC	6 cut(s)	105, 133, 142, 166, 172, 271
BspANI	GGCC	2 cut(s)	155, 221
BspEI	TCCGGA	2 cut(s)	23, 82
BspFNI	CGCG	2 cut(s)	12, 174
BspLI	GGNNCC	3 cut(s)	87, 100, 216
BspPI	GGATC	2 cut(s)	74, 175
BsrI	ACTGG	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	3 cut(s)	49, 79, 180
Bst2UI	CCWGG	3 cut(s)	146, 152, 251
Bst4CI	ACNGT	2 cut(s)	70, 319
Bst6I	CTCTTC	1 cut(s)	40
BstC8I	GCNNGC	1 cut(s)	344
BstENI	CCTNNNNNAGG	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	246, 267
BstFNI	CGCG	2 cut(s)	12, 174
BstH2I	RGCGCY	1 cut(s)	340
BstHHI	GCGC	2 cut(s)	176, 339
BstKTI	GATC	3 cut(s)	52, 82, 183
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	3 cut(s)	49, 79, 180
BstMCI	CGRYCG	1 cut(s)	166
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 343
BstNI	CCWGG	3 cut(s)	146, 152, 251
BstSCI	CCNGG	7 cut(s)	94, 100, 144, 150, 209, 210, 249
BstUI	CGCG	2 cut(s)	12, 174
BstV1I	GCAGC	2 cut(s)	147, 326
BsuRI	GGCC	2 cut(s)	155, 221
BtgZI	GCGATG	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	246, 267
BtuMI	TCGCGA	1 cut(s)	12
Cac8I	GCNNGC	1 cut(s)	344
CfoI	GCGC	2 cut(s)	176, 339
Cfr13I	GGNCC	2 cut(s)	98, 148
Cfr9I	CCCGGG	1 cut(s)	210
CviAII	CATG	2 cut(s)	43, 226
CviJI	RGCY	4 cut(s)	138, 155, 221, 346
CviKI_1	RGCY	4 cut(s)	138, 155, 221, 346
DpnI	GATC	3 cut(s)	51, 81, 182
DpnII	GATC	3 cut(s)	49, 79, 180
EaeI	YGGCCR	1 cut(s)	219
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
EciI	GGCGGA	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	348
Eco47I	GGWCC	2 cut(s)	98, 148
Eco47III	AGCGCT	1 cut(s)	338
Eco88I	CYCGRG	1 cut(s)	210
EcoNI	CCTNNNNNAGG	1 cut(s)	248
EcoRII	CCWGG	3 cut(s)	144, 150, 249
EcoT38I	GRGCYC	1 cut(s)	348
Esp3I	CGTCTC	1 cut(s)	286
FaeI	CATG	2 cut(s)	46, 229
FaiI	YATR	2 cut(s)	44, 227
FaqI	GGGAC	1 cut(s)	193
FatI	CATG	2 cut(s)	42, 225
Fnu4HI	GCNGC	3 cut(s)	106, 136, 340
FokI	GGATG	2 cut(s)	233, 254
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	3 cut(s)	106, 136, 340
FspBI	CTAG	1 cut(s)	355
GlaI	GCGC	2 cut(s)	175, 338
GluI	GCNGC	3 cut(s)	106, 136, 340
HaeII	RGCGCY	1 cut(s)	340
HaeIII	GGCC	2 cut(s)	155, 221
HapII	CCGG	6 cut(s)	24, 83, 96, 102, 211, 218
HhaI	GCGC	2 cut(s)	176, 339
Hin1II	CATG	2 cut(s)	46, 229
Hin6I	GCGC	2 cut(s)	174, 337
HinP1I	GCGC	2 cut(s)	174, 337
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	3 cut(s)	14, 27, 32
HpaII	CCGG	6 cut(s)	24, 83, 96, 102, 211, 218
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	3 cut(s)	180, 295, 307
Hpy188III	TCNNGA	4 cut(s)	11, 24, 83, 232
Hpy8I	GTNNAC	1 cut(s)	193
HpyCH4III	ACNGT	2 cut(s)	70, 319
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 343
Hsp92II	CATG	2 cut(s)	46, 229
HspAI	GCGC	2 cut(s)	174, 337
Kpn2I	TCCGGA	2 cut(s)	23, 82
Kzo9I	GATC	3 cut(s)	49, 79, 180
LmnI	GCTCC	1 cut(s)	334
Lsp1109I	GCAGC	2 cut(s)	147, 326
MaeI	CTAG	1 cut(s)	355
MalI	GATC	3 cut(s)	51, 81, 182
MboI	GATC	3 cut(s)	49, 79, 180
MboII	GAAGA	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	348
MlyI	GAGTC	2 cut(s)	21, 26
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	6 cut(s)	28, 31, 103, 170, 254, 313
MroI	TCCGGA	2 cut(s)	23, 82
MspI	CCGG	6 cut(s)	24, 83, 96, 102, 211, 218
MspR9I	CCNGG	7 cut(s)	96, 102, 146, 152, 211, 212, 251
MvaI	CCWGG	3 cut(s)	146, 152, 251
MvnI	CGCG	2 cut(s)	12, 174
MwoI	GCNNNNNNNGC	2 cut(s)	141, 343
NciI	CCSGG	4 cut(s)	96, 102, 211, 212
NdeII	GATC	3 cut(s)	49, 79, 180
NlaIII	CATG	2 cut(s)	46, 229
NlaIV	GGNNCC	3 cut(s)	87, 100, 216
NruI	TCGCGA	1 cut(s)	12
PfeI	GAWTC	1 cut(s)	14
PfoI	TCCNGGA	1 cut(s)	249
PkrI	GCNGC	3 cut(s)	107, 137, 341
PleI	GAGTC	2 cut(s)	21, 26
PpsI	GAGTC	2 cut(s)	21, 26
Psp6I	CCWGG	3 cut(s)	144, 150, 249
PspGI	CCWGG	3 cut(s)	144, 150, 249
PspN4I	GGNNCC	3 cut(s)	87, 100, 216
PspPI	GGNCC	2 cut(s)	98, 148
RruI	TCGCGA	1 cut(s)	12
SatI	GCNGC	3 cut(s)	106, 136, 340
Sau3AI	GATC	3 cut(s)	49, 79, 180
Sau96I	GGNCC	2 cut(s)	98, 148
SchI	GAGTC	2 cut(s)	21, 26
ScrFI	CCNGG	7 cut(s)	96, 102, 146, 152, 211, 212, 251
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	5 cut(s)	114, 140, 150, 279, 300
SinI	GGWCC	2 cut(s)	98, 148
SmaI	CCCGGG	1 cut(s)	212
SsiI	CCGC	6 cut(s)	105, 133, 142, 166, 172, 271
SspMI	CTAG	1 cut(s)	355
StyD4I	CCNGG	7 cut(s)	94, 100, 144, 150, 209, 210, 249
TaaI	ACNGT	2 cut(s)	70, 319
TaqI	TCGA	4 cut(s)	30, 38, 120, 162
TauI	GCSGC	1 cut(s)	108
TfiI	GAWTC	1 cut(s)	14
TseI	GCWGC	2 cut(s)	135, 339
TspMI	CCCGGG	1 cut(s)	210
VpaK11BI	GGWCC	2 cut(s)	98, 148
XagI	CCTNNNNNAGG	1 cut(s)	248
XmaI	CCCGGG	1 cut(s)	210
XspI	CTAG	1 cut(s)	355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.