Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0007141

Physical Location & Seq

Genomic Coordinates Reverse (-)

8148029 .. 8148376

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027071

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGACCACCCGCGAATCCTCCTCCGGACTCGACTCTTCGAGCATGGACGATCAACCCACCAAACGCACCGTTTCACTTGATCCGGAACCCGAACCCGGCGGCGAGGTCTGGGTCGAAAACTTCAACCGCAGCTTCCGCCAGGTCCAGGCCGTCCTCGACCGCAACCGCGCTCTGATCCAGCAAGTCAACGACAACCACCAGTCCCGGATTCCGGCCAACATGGTCAAGAACGTCGCCCTCATCCAGGAAATCAACGCCAACATCCGCAAGGTCGTCTCGCTCTACTCCGACCTGTCCTCCGATTTCTCCACCGTCTTTCGCAACAAGGACCACTCCGAGCCCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009639 GO:0009648 GO:0009649 GO:0009791 GO:0009909 GO:0009987 GO:0010017 GO:0010114 GO:0010228 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0042752 GO:0042753 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048518 GO:0048573 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080167 GO:0104004 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1313

Protein Analysis

116

Amino Acids

13.0

Weight (kDa)

5.3

Isoelectric Point (pI)

55.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Elf4	PF07011	36 - 112	3.8e-37	Early Flowering 4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40080
fragaria_vesca	FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450
malus_domestica	MD01G1152700.v1.1
prunus_persica	Prupe.2G249800_v2.0.a1
pyrus_communis	pycom07g20010
rosa_chinensis	RchiOBHm_Chr1g0370131
rosa_laevigata	RLG00000027071
rosa_multiflora	Rmu_sc0005056.1_g000001 Rmu_sc0011509.1_g000004
rosa_roxburghii	Rroxscaffold_4G00286790
rosa_rugosa	Rorug01G0354400
rosa_samantha	Rh1AG362900 Rh1BG326100 Rh1CG339400 Rh1DG356600
rosa_wichuraiana	Rw1G031940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	12, 168
AccIII	TCCGGA	2 cut(s)	23, 82
AciI	CCGC	7 cut(s)	10, 99, 127, 136, 160, 166, 265
AclWI	GGATC	2 cut(s)	74, 169
AcoI	YGGCCR	1 cut(s)	213
AfiI	CCNNNNNNNGG	4 cut(s)	95, 145, 211, 244
AgsI	TTSAA	1 cut(s)	124
AjnI	CCWGG	3 cut(s)	138, 144, 243
AluBI	AGCT	1 cut(s)	132
AluI	AGCT	1 cut(s)	132
Alw26I	GTCTC	1 cut(s)	280
AlwI	GGATC	2 cut(s)	74, 169
Aor13HI	TCCGGA	2 cut(s)	23, 82
AoxI	GGCC	2 cut(s)	147, 213
ApeKI	GCWGC	1 cut(s)	129
AspLEI	GCGC	1 cut(s)	170
AspS9I	GGNCC	2 cut(s)	142, 328
AsuC2I	CCSGG	2 cut(s)	96, 205
AvaII	GGWCC	2 cut(s)	142, 328
BanII	GRGCYC	1 cut(s)	342
BbvI	GCAGC	1 cut(s)	141
BceAI	ACGGC	1 cut(s)	134
BciT130I	CCWGG	3 cut(s)	140, 146, 245
BcnI	CCSGG	2 cut(s)	96, 205
BcoDI	GTCTC	1 cut(s)	280
BfaI	CTAG	1 cut(s)	346
BisI	GCNGC	2 cut(s)	100, 130
BlsI	GCNGC	2 cut(s)	101, 131
Bme1390I	CCNGG	5 cut(s)	96, 140, 146, 205, 245
Bme18I	GGWCC	2 cut(s)	142, 328
BmgT120I	GGNCC	2 cut(s)	142, 328
BmiI	GGNNCC	1 cut(s)	87
BmrFI	CCNGG	5 cut(s)	96, 140, 146, 205, 245
BpuMI	CCSGG	2 cut(s)	96, 205
BsaWI	WCCGGW	2 cut(s)	23, 82
BsaXI	ACNNNNNCTCC	2 cut(s)	281, 311
Bsc4I	CCNNNNNNNGG	4 cut(s)	95, 145, 211, 244
Bse1I	ACTGG	1 cut(s)	199
BseAI	TCCGGA	2 cut(s)	23, 82
BseBI	CCWGG	3 cut(s)	140, 146, 245
BseGI	GGATG	2 cut(s)	240, 261
BseLI	CCNNNNNNNGG	4 cut(s)	95, 145, 211, 244
BseNI	ACTGG	1 cut(s)	199
BseRI	GAGGAG	1 cut(s)	10
BseXI	GCAGC	1 cut(s)	141
Bsh1236I	CGCG	2 cut(s)	12, 168
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	2 cut(s)	149, 215
BsiEI	CGRYCG	1 cut(s)	160
BsiSI	CCGG	5 cut(s)	24, 83, 96, 205, 212
BslFI	GGGAC	1 cut(s)	187
BslI	CCNNNNNNNGG	4 cut(s)	95, 145, 211, 244
BsmAI	GTCTC	1 cut(s)	280
BsmBI	CGTCTC	1 cut(s)	280
BsmFI	GGGAC	1 cut(s)	187
BsnI	GGCC	2 cut(s)	149, 215
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp13I	TCCGGA	2 cut(s)	23, 82
Bsp143I	GATC	3 cut(s)	49, 79, 174
BspACI	CCGC	7 cut(s)	10, 99, 127, 136, 160, 166, 265
BspANI	GGCC	2 cut(s)	149, 215
BspEI	TCCGGA	2 cut(s)	23, 82
BspFNI	CGCG	2 cut(s)	12, 168
BspLI	GGNNCC	1 cut(s)	87
BspPI	GGATC	2 cut(s)	74, 169
BsrI	ACTGG	1 cut(s)	199
BssMI	GATC	3 cut(s)	49, 79, 174
Bst2UI	CCWGG	3 cut(s)	140, 146, 245
Bst4CI	ACNGT	2 cut(s)	70, 313
Bst6I	CTCTTC	1 cut(s)	40
BstENI	CCTNNNNNAGG	1 cut(s)	242
BstF5I	GGATG	2 cut(s)	240, 261
BstFNI	CGCG	2 cut(s)	12, 168
BstHHI	GCGC	1 cut(s)	170
BstKTI	GATC	3 cut(s)	52, 82, 177
BstMAI	GTCTC	1 cut(s)	280
BstMBI	GATC	3 cut(s)	49, 79, 174
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BstNI	CCWGG	3 cut(s)	140, 146, 245
BstSCI	CCNGG	5 cut(s)	94, 138, 144, 203, 243
BstUI	CGCG	2 cut(s)	12, 168
BstV1I	GCAGC	1 cut(s)	141
BsuRI	GGCC	2 cut(s)	149, 215
BtsCI	GGATG	2 cut(s)	240, 261
CfoI	GCGC	1 cut(s)	170
Cfr13I	GGNCC	2 cut(s)	142, 328
CviAII	CATG	2 cut(s)	43, 220
CviJI	RGCY	4 cut(s)	132, 149, 215, 340
CviKI_1	RGCY	4 cut(s)	132, 149, 215, 340
DpnI	GATC	3 cut(s)	51, 81, 176
DpnII	GATC	3 cut(s)	49, 79, 174
EaeI	YGGCCR	1 cut(s)	213
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
EciI	GGCGGA	1 cut(s)	125
Eco24I	GRGCYC	1 cut(s)	342
Eco47I	GGWCC	2 cut(s)	142, 328
EcoNI	CCTNNNNNAGG	1 cut(s)	242
EcoRII	CCWGG	3 cut(s)	138, 144, 243
EcoT38I	GRGCYC	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	280
FaeI	CATG	2 cut(s)	46, 223
FaiI	YATR	2 cut(s)	44, 221
FaqI	GGGAC	1 cut(s)	187
FatI	CATG	2 cut(s)	42, 219
FauI	CCCGC	1 cut(s)	17
Fnu4HI	GCNGC	2 cut(s)	100, 130
FokI	GGATG	2 cut(s)	227, 248
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	2 cut(s)	100, 130
FspBI	CTAG	1 cut(s)	346
GlaI	GCGC	1 cut(s)	169
GluI	GCNGC	2 cut(s)	100, 130
HaeIII	GGCC	2 cut(s)	149, 215
HapII	CCGG	5 cut(s)	24, 83, 96, 205, 212
HhaI	GCGC	1 cut(s)	170
Hin1II	CATG	2 cut(s)	46, 223
Hin6I	GCGC	1 cut(s)	168
HinP1I	GCGC	1 cut(s)	168
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HinfI	GANTC	4 cut(s)	14, 27, 32, 208
HpaII	CCGG	5 cut(s)	24, 83, 96, 205, 212
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	4 cut(s)	174, 289, 301, 337
Hpy188III	TCNNGA	3 cut(s)	24, 83, 226
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	1 cut(s)	236
HpyCH4III	ACNGT	2 cut(s)	70, 313
HpyCH4IV	ACGT	1 cut(s)	231
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	46, 223
HspAI	GCGC	1 cut(s)	168
Kpn2I	TCCGGA	2 cut(s)	23, 82
Kzo9I	GATC	3 cut(s)	49, 79, 174
Lsp1109I	GCAGC	1 cut(s)	141
MaeI	CTAG	1 cut(s)	346
MaeII	ACGT	1 cut(s)	231
MalI	GATC	3 cut(s)	51, 81, 176
MboI	GATC	3 cut(s)	49, 79, 174
MboII	GAAGA	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	342
MlyI	GAGTC	2 cut(s)	21, 26
MmeI	TCCRAC	1 cut(s)	312
MnlI	CCTC	6 cut(s)	28, 31, 97, 164, 248, 307
MroI	TCCGGA	2 cut(s)	23, 82
MspI	CCGG	5 cut(s)	24, 83, 96, 205, 212
MspR9I	CCNGG	5 cut(s)	96, 140, 146, 205, 245
MvaI	CCWGG	3 cut(s)	140, 146, 245
MvnI	CGCG	2 cut(s)	12, 168
MwoI	GCNNNNNNNGC	1 cut(s)	135
NciI	CCSGG	2 cut(s)	96, 205
NdeII	GATC	3 cut(s)	49, 79, 174
NlaIII	CATG	2 cut(s)	46, 223
NlaIV	GGNNCC	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	14, 208
PfoI	TCCNGGA	2 cut(s)	203, 243
PkrI	GCNGC	2 cut(s)	101, 131
PleI	GAGTC	2 cut(s)	21, 26
PpsI	GAGTC	2 cut(s)	21, 26
Psp6I	CCWGG	3 cut(s)	138, 144, 243
PspGI	CCWGG	3 cut(s)	138, 144, 243
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	2 cut(s)	142, 328
SatI	GCNGC	2 cut(s)	100, 130
Sau3AI	GATC	3 cut(s)	49, 79, 174
Sau96I	GGNCC	2 cut(s)	142, 328
SchI	GAGTC	2 cut(s)	21, 26
ScrFI	CCNGG	5 cut(s)	96, 140, 146, 205, 245
SduI	GDGCHC	1 cut(s)	342
SetI	ASST	6 cut(s)	108, 134, 144, 234, 273, 294
SinI	GGWCC	2 cut(s)	142, 328
SsiI	CCGC	7 cut(s)	10, 99, 127, 136, 160, 166, 265
SspMI	CTAG	1 cut(s)	346
StyD4I	CCNGG	5 cut(s)	94, 138, 144, 203, 243
TaaI	ACNGT	2 cut(s)	70, 313
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	4 cut(s)	30, 38, 114, 156
TauI	GCSGC	1 cut(s)	102
TfiI	GAWTC	2 cut(s)	14, 208
TseI	GCWGC	1 cut(s)	129
VpaK11BI	GGWCC	2 cut(s)	142, 328
XagI	CCTNNNNNAGG	1 cut(s)	242
XspI	CTAG	1 cut(s)	346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.