Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0007141

Physical Location & Seq

Genomic Coordinates Forward (+)

26116744 .. 26117410

Gene Structure 667 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1152700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGACAGGAAACAACAAACGACAAAACACAGAGCCGACCGATGCGCCCGCATTTTTCACGCACATGACCTCCCGCGATTCATCTTCCGGAGCCGAGTCGAGCATGGACTACTTCAGCCACGAATCCCCAACCAAACGCACCGTTCCGGCCACCGCCGTCTTCGATCAAGACGAGGAAGCCGACGATTCGGAGCTGTGGGACCAGTTCAACCGCAGGTTCAGCGAGGTCCAGTCCTTACTGGATCGCAACCGCTCCCTGATCCAGCAGGTCAACGACAACCATCGGTCTCGGATCGCCGACAACATGGTCAAGAACGTGGCGCTTATCCAGGAGATAAACGGCAACATCTCCAAGGTCGTTTCTCTTTACTCCGACCTCTCATCAAATTTCTCCACCTTCTTTCACCACCACAACGCCTGCAAAAATGCCGAGGACGGCGGTGCCGAGCCCGATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009639 GO:0009648 GO:0009649 GO:0009791 GO:0009909 GO:0009987 GO:0010017 GO:0010114 GO:0010228 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0042752 GO:0042753 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048518 GO:0048573 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080167 GO:0104004 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1313

Protein Analysis

153

Amino Acids

17.13

Weight (kDa)

4.89

Isoelectric Point (pI)

67.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Elf4	PF07011	62 - 139	1.1e-36	Early Flowering 4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40080
fragaria_vesca	FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450
malus_domestica	MD01G1152700.v1.1
prunus_persica	Prupe.2G249800_v2.0.a1
pyrus_communis	pycom07g20010
rosa_chinensis	RchiOBHm_Chr1g0370131
rosa_laevigata	RLG00000027071
rosa_multiflora	Rmu_sc0005056.1_g000001 Rmu_sc0011509.1_g000004
rosa_roxburghii	Rroxscaffold_4G00286790
rosa_rugosa	Rorug01G0354400
rosa_samantha	Rh1AG362900 Rh1BG326100 Rh1CG339400 Rh1DG356600
rosa_wichuraiana	Rw1G031940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	305
Acc36I	ACCTGC	2 cut(s)	204, 256
AccB1I	GGYRCC	1 cut(s)	440
AccBSI	CCGCTC	1 cut(s)	252
AccII	CGCG	1 cut(s)	75
AccIII	TCCGGA	1 cut(s)	86
AciI	CCGC	6 cut(s)	48, 73, 153, 211, 250, 438
AclWI	GGATC	3 cut(s)	249, 253, 299
AcoI	YGGCCR	1 cut(s)	147
AcsI	RAATTY	1 cut(s)	385
AcuI	CTGAAG	1 cut(s)	97
AgsI	TTSAA	1 cut(s)	208
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
Alw26I	GTCTC	1 cut(s)	291
AlwI	GGATC	3 cut(s)	249, 253, 299
Aor13HI	TCCGGA	1 cut(s)	86
AoxI	GGCC	1 cut(s)	147
ApoI	RAATTY	1 cut(s)	385
AspLEI	GCGC	2 cut(s)	46, 322
AspS9I	GGNCC	2 cut(s)	199, 226
AsuHPI	GGTGA	1 cut(s)	395
AvaII	GGWCC	2 cut(s)	199, 226
BanI	GGYRCC	1 cut(s)	440
BanII	GRGCYC	1 cut(s)	450
BbsI	GAAGAC	1 cut(s)	151
BccI	CCATC	1 cut(s)	288
BceAI	ACGGC	3 cut(s)	140, 355, 451
BciT130I	CCWGG	1 cut(s)	329
BcoDI	GTCTC	1 cut(s)	291
BfaI	CTAG	1 cut(s)	457
BfoI	RGCGCY	1 cut(s)	323
BfuAI	ACCTGC	2 cut(s)	204, 256
Bme1390I	CCNGG	1 cut(s)	329
Bme18I	GGWCC	2 cut(s)	199, 226
BmgT120I	GGNCC	2 cut(s)	199, 226
BmiI	GGNNCC	3 cut(s)	91, 200, 442
BmrFI	CCNGG	1 cut(s)	329
BmsI	GCATC	1 cut(s)	31
BpiI	GAAGAC	1 cut(s)	151
BsaI	GGTCTC	1 cut(s)	291
BsaJI	CCNNGG	2 cut(s)	351, 429
BsaWI	WCCGGW	1 cut(s)	86
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bse1I	ACTGG	3 cut(s)	202, 229, 243
BseAI	TCCGGA	1 cut(s)	86
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	2 cut(s)	351, 429
BseNI	ACTGG	3 cut(s)	202, 229, 243
Bsh1236I	CGCG	1 cut(s)	75
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	1 cut(s)	149
BshNI	GGYRCC	1 cut(s)	440
BsiEI	CGRYCG	1 cut(s)	39
BsiSI	CCGG	2 cut(s)	87, 146
BslFI	GGGAC	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	291
BsmFI	GGGAC	1 cut(s)	212
BsnI	GGCC	1 cut(s)	149
Bso31I	GGTCTC	1 cut(s)	291
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp13I	TCCGGA	1 cut(s)	86
Bsp143I	GATC	4 cut(s)	163, 241, 258, 291
BspACI	CCGC	6 cut(s)	48, 73, 153, 211, 250, 438
BspANI	GGCC	1 cut(s)	149
BspEI	TCCGGA	1 cut(s)	86
BspFNI	CGCG	1 cut(s)	75
BspLI	GGNNCC	3 cut(s)	91, 200, 442
BspMI	ACCTGC	2 cut(s)	204, 256
BspPI	GGATC	3 cut(s)	249, 253, 299
BspT107I	GGYRCC	1 cut(s)	440
BspTNI	GGTCTC	1 cut(s)	291
BsrBI	CCGCTC	1 cut(s)	252
BsrI	ACTGG	3 cut(s)	202, 229, 243
BssECI	CCNNGG	2 cut(s)	351, 429
BssMI	GATC	4 cut(s)	163, 241, 258, 291
BssT1I	CCWWGG	1 cut(s)	351
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	1 cut(s)	142
BstC8I	GCNNGC	2 cut(s)	48, 418
BstFNI	CGCG	1 cut(s)	75
BstH2I	RGCGCY	1 cut(s)	323
BstHHI	GCGC	2 cut(s)	46, 322
BstKTI	GATC	4 cut(s)	166, 244, 261, 294
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	4 cut(s)	163, 241, 258, 291
BstMCI	CGRYCG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstNI	CCWGG	1 cut(s)	329
BstSCI	CCNGG	1 cut(s)	327
BstUI	CGCG	1 cut(s)	75
BstV2I	GAAGAC	1 cut(s)	151
BsuRI	GGCC	1 cut(s)	149
BveI	ACCTGC	2 cut(s)	204, 256
Cac8I	GCNNGC	2 cut(s)	48, 418
CfoI	GCGC	2 cut(s)	46, 322
Cfr13I	GGNCC	2 cut(s)	199, 226
CviAII	CATG	3 cut(s)	64, 103, 304
CviJI	RGCY	7 cut(s)	34, 92, 117, 149, 179, 193, 448
CviKI_1	RGCY	7 cut(s)	34, 92, 117, 149, 179, 193, 448
DpnI	GATC	4 cut(s)	165, 243, 260, 293
DpnII	GATC	4 cut(s)	163, 241, 258, 291
DrdI	GACNNNNNNGTC	1 cut(s)	305
DseDI	GACNNNNNNGTC	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	351
Eco24I	GRGCYC	1 cut(s)	450
Eco31I	GGTCTC	1 cut(s)	291
Eco47I	GGWCC	2 cut(s)	199, 226
Eco57I	CTGAAG	1 cut(s)	97
EcoRII	CCWGG	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	351
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	3 cut(s)	67, 106, 307
FaiI	YATR	3 cut(s)	65, 104, 305
FaqI	GGGAC	1 cut(s)	212
FatI	CATG	3 cut(s)	63, 102, 303
FauI	CCCGC	2 cut(s)	55, 80
FriOI	GRGCYC	1 cut(s)	450
FspBI	CTAG	1 cut(s)	457
GlaI	GCGC	2 cut(s)	45, 321
HaeII	RGCGCY	1 cut(s)	323
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	2 cut(s)	87, 146
HhaI	GCGC	2 cut(s)	46, 322
Hin1II	CATG	3 cut(s)	67, 106, 307
Hin6I	GCGC	2 cut(s)	44, 320
HinP1I	GCGC	2 cut(s)	44, 320
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	4 cut(s)	77, 95, 122, 185
HpaII	CCGG	2 cut(s)	87, 146
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	3 cut(s)	190, 291, 373
Hpy188III	TCNNGA	3 cut(s)	87, 167, 310
Hpy8I	GTNNAC	1 cut(s)	271
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	1 cut(s)	406
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	1 cut(s)	420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	3 cut(s)	67, 106, 307
HspAI	GCGC	2 cut(s)	44, 320
Kpn2I	TCCGGA	1 cut(s)	86
Kzo9I	GATC	4 cut(s)	163, 241, 258, 291
LmnI	GCTCC	3 cut(s)	89, 190, 257
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	457
MaeII	ACGT	1 cut(s)	315
MalI	GATC	4 cut(s)	165, 243, 260, 293
MbiI	CCGCTC	1 cut(s)	252
MboI	GATC	4 cut(s)	163, 241, 258, 291
MboII	GAAGA	2 cut(s)	75, 151
MhlI	GDGCHC	1 cut(s)	450
MluCI	AATT	1 cut(s)	385
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	5 cut(s)	79, 166, 217, 386, 424
MroI	TCCGGA	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	62
MspI	CCGG	2 cut(s)	87, 146
MspR9I	CCNGG	1 cut(s)	329
MvaI	CCWGG	1 cut(s)	329
MvnI	CGCG	1 cut(s)	75
MwoI	GCNNNNNNNGC	1 cut(s)	219
NdeII	GATC	4 cut(s)	163, 241, 258, 291
NlaIII	CATG	3 cut(s)	67, 106, 307
NlaIV	GGNNCC	3 cut(s)	91, 200, 442
NmeAIII	GCCGAG	2 cut(s)	118, 454
PcsI	WCGNNNNNNNCGW	3 cut(s)	168, 177, 441
PfeI	GAWTC	3 cut(s)	77, 122, 185
PfoI	TCCNGGA	1 cut(s)	327
PleI	GAGTC	1 cut(s)	103
PpsI	GAGTC	1 cut(s)	103
Psp6I	CCWGG	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	3 cut(s)	91, 200, 442
PspPI	GGNCC	2 cut(s)	199, 226
RseI	CAYNNNNRTG	1 cut(s)	62
Sau3AI	GATC	4 cut(s)	163, 241, 258, 291
Sau96I	GGNCC	2 cut(s)	199, 226
SchI	GAGTC	1 cut(s)	104
ScrFI	CCNGG	1 cut(s)	329
SduI	GDGCHC	1 cut(s)	450
SetI	ASST	9 cut(s)	71, 195, 218, 228, 270, 318, 357, 378, 398
SfaNI	GCATC	1 cut(s)	31
SinI	GGWCC	2 cut(s)	199, 226
SmiMI	CAYNNNNRTG	1 cut(s)	62
Sse9I	AATT	1 cut(s)	385
SsiI	CCGC	6 cut(s)	48, 73, 153, 211, 250, 438
SspMI	CTAG	1 cut(s)	457
StyD4I	CCNGG	1 cut(s)	327
StyI	CCWWGG	1 cut(s)	351
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	2 cut(s)	98, 162
TaqII	GACCGA	2 cut(s)	53, 273
TasI	AATT	1 cut(s)	385
TfiI	GAWTC	3 cut(s)	77, 122, 185
TspDTI	ATGAA	1 cut(s)	69
VpaK11BI	GGWCC	2 cut(s)	199, 226
XapI	RAATTY	1 cut(s)	385
XspI	CTAG	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.