Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0007141

Physical Location & Seq

Genomic Coordinates Forward (+)

26500697 .. 26501643

Gene Structure 947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G249800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCTCATGACCACCCGGGATTCCTCCTCCGGAGCAGAATCGAGCATGGACTTCAACCACCACGAAACCCCAACTAAACGCAGCGTTTCGGGCTCACCCTCGGTCGACGAAGAAGAGGAAGCCGAGGATGCGGAGGTGTGGGACCAGTTTAACCGCAGGTTCCGCGAGGTACAGGCCGTGCTGGATCGGAACCGAGCCCTGATCCAGCAGGTGAACGACAACCACCGCTCTCGAGTCGCCGACAACATGGTCAAGAACGTGGGTCTTATCCAAGAGATCAACGGCAACATCTCCAAGGTCGTTTCGCTTTACTCCGACCTCTCCTCCAATTTCTCCACCTTCTTTCACCACCGCAACGACAACGCCAACGCCAAGCCCAAAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009639 GO:0009648 GO:0009649 GO:0009791 GO:0009909 GO:0009987 GO:0010017 GO:0010114 GO:0010228 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0042752 GO:0042753 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048518 GO:0048573 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080167 GO:0104004 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1313

Protein Analysis

129

Amino Acids

14.55

Weight (kDa)

5.48

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40080
fragaria_vesca	FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450
malus_domestica	MD01G1152700.v1.1
prunus_persica	Prupe.2G249800_v2.0.a1
pyrus_communis	pycom07g20010
rosa_chinensis	RchiOBHm_Chr1g0370131
rosa_laevigata	RLG00000027071
rosa_multiflora	Rmu_sc0005056.1_g000001 Rmu_sc0011509.1_g000004
rosa_roxburghii	Rroxscaffold_4G00286790
rosa_rugosa	Rorug01G0354400
rosa_samantha	Rh1AG362900 Rh1BG326100 Rh1CG339400 Rh1DG356600
rosa_wichuraiana	Rw1G031940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	199
AasI	GACNNNNNNGTC	1 cut(s)	248
Acc36I	ACCTGC	2 cut(s)	147, 199
AccBSI	CCGCTC	1 cut(s)	228
AccI	GTMKAC	1 cut(s)	105
AccII	CGCG	1 cut(s)	165
AccIII	TCCGGA	1 cut(s)	29
AciI	CCGC	5 cut(s)	131, 154, 163, 226, 352
AclWI	GGATC	2 cut(s)	192, 196
AfaI	GTAC	1 cut(s)	171
AgsI	TTSAA	1 cut(s)	55
AlwI	GGATC	2 cut(s)	192, 196
Ama87I	CYCGRG	2 cut(s)	15, 231
Aor13HI	TCCGGA	1 cut(s)	29
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	1 cut(s)	81
AspS9I	GGNCC	1 cut(s)	142
AsuC2I	CCSGG	2 cut(s)	16, 17
AsuHPI	GGTGA	3 cut(s)	87, 223, 338
AvaI	CYCGRG	2 cut(s)	15, 231
AvaII	GGWCC	1 cut(s)	142
BanII	GRGCYC	2 cut(s)	95, 199
BbvI	GCAGC	1 cut(s)	93
BceAI	ACGGC	2 cut(s)	161, 298
BcnI	CCSGG	2 cut(s)	16, 17
BfaI	CTAG	1 cut(s)	385
BfuAI	ACCTGC	2 cut(s)	147, 199
BisI	GCNGC	1 cut(s)	82
BlsI	GCNGC	1 cut(s)	83
Bme1390I	CCNGG	2 cut(s)	16, 17
Bme18I	GGWCC	1 cut(s)	142
BmeT110I	CYCGRG	2 cut(s)	15, 231
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	3 cut(s)	143, 161, 191
BmrFI	CCNGG	2 cut(s)	16, 17
BmsI	GCATC	1 cut(s)	118
BpuMI	CCSGG	2 cut(s)	16, 17
BsaJI	CCNNGG	4 cut(s)	15, 99, 123, 294
BsaWI	WCCGGW	1 cut(s)	29
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bse1I	ACTGG	1 cut(s)	145
BseAI	TCCGGA	1 cut(s)	29
BseDI	CCNNGG	4 cut(s)	15, 99, 123, 294
BseGI	GGATG	1 cut(s)	133
BseNI	ACTGG	1 cut(s)	145
BseRI	GAGGAG	2 cut(s)	16, 313
BseXI	GCAGC	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	165
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	1 cut(s)	176
BsiEI	CGRYCG	1 cut(s)	105
BsiHKCI	CYCGRG	2 cut(s)	15, 231
BsiSI	CCGG	2 cut(s)	16, 30
BslFI	GGGAC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	176
BsoBI	CYCGRG	2 cut(s)	15, 231
Bsp1286I	GDGCHC	2 cut(s)	95, 199
Bsp13I	TCCGGA	1 cut(s)	29
Bsp143I	GATC	3 cut(s)	184, 201, 276
BspACI	CCGC	5 cut(s)	131, 154, 163, 226, 352
BspANI	GGCC	1 cut(s)	176
BspEI	TCCGGA	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	165
BspHI	TCATGA	1 cut(s)	6
BspLI	GGNNCC	3 cut(s)	143, 161, 191
BspMI	ACCTGC	2 cut(s)	147, 199
BspPI	GGATC	2 cut(s)	192, 196
BsrBI	CCGCTC	1 cut(s)	228
BsrI	ACTGG	1 cut(s)	145
BssECI	CCNNGG	4 cut(s)	15, 99, 123, 294
BssMI	GATC	3 cut(s)	184, 201, 276
BssT1I	CCWWGG	1 cut(s)	294
Bst6I	CTCTTC	1 cut(s)	108
BstF5I	GGATG	1 cut(s)	133
BstFNI	CGCG	1 cut(s)	165
BstKTI	GATC	3 cut(s)	187, 204, 279
BstMBI	GATC	3 cut(s)	184, 201, 276
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	3 cut(s)	90, 128, 162
BstSCI	CCNGG	2 cut(s)	14, 15
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	133
BveI	ACCTGC	2 cut(s)	147, 199
CciI	TCATGA	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	142
Cfr9I	CCCGGG	1 cut(s)	15
Csp6I	GTAC	1 cut(s)	170
CviAII	CATG	3 cut(s)	7, 46, 247
CviJI	RGCY	5 cut(s)	93, 122, 176, 197, 376
CviKI_1	RGCY	5 cut(s)	93, 122, 176, 197, 376
CviQI	GTAC	1 cut(s)	170
DpnI	GATC	3 cut(s)	186, 203, 278
DpnII	GATC	3 cut(s)	184, 201, 276
DrdI	GACNNNNNNGTC	1 cut(s)	248
DseDI	GACNNNNNNGTC	1 cut(s)	248
Eam1104I	CTCTTC	1 cut(s)	108
EarI	CTCTTC	1 cut(s)	108
Eco130I	CCWWGG	1 cut(s)	294
Eco24I	GRGCYC	2 cut(s)	95, 199
Eco47I	GGWCC	1 cut(s)	142
Eco88I	CYCGRG	2 cut(s)	15, 231
EcoT14I	CCWWGG	1 cut(s)	294
EcoT38I	GRGCYC	2 cut(s)	95, 199
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	3 cut(s)	10, 49, 250
FaiI	YATR	3 cut(s)	8, 47, 248
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	3 cut(s)	6, 45, 246
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	82
FokI	GGATG	1 cut(s)	140
FriOI	GRGCYC	2 cut(s)	95, 199
Fsp4HI	GCNGC	1 cut(s)	82
FspBI	CTAG	1 cut(s)	385
GluI	GCNGC	1 cut(s)	82
HaeIII	GGCC	1 cut(s)	176
HapII	CCGG	2 cut(s)	16, 30
Hin1II	CATG	3 cut(s)	10, 49, 250
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	3 cut(s)	20, 38, 234
HpaII	CCGG	2 cut(s)	16, 30
HphI	GGTGA	3 cut(s)	87, 223, 338
Hpy166II	GTNNAC	2 cut(s)	106, 214
Hpy188I	TCNGA	2 cut(s)	189, 316
Hpy188III	TCNNGA	4 cut(s)	7, 30, 231, 253
Hpy8I	GTNNAC	2 cut(s)	106, 214
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	349
HpyCH4IV	ACGT	1 cut(s)	258
HpyF10VI	GCNNNNNNNGC	3 cut(s)	90, 128, 162
HpySE526I	ACGT	1 cut(s)	258
Hsp92II	CATG	3 cut(s)	10, 49, 250
Kpn2I	TCCGGA	1 cut(s)	29
Kzo9I	GATC	3 cut(s)	184, 201, 276
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	9 cut(s)	29, 43, 142, 158, 158, 167, 194, 212, 218
Lsp1109I	GCAGC	1 cut(s)	93
LweI	GCATC	1 cut(s)	118
MaeI	CTAG	1 cut(s)	385
MaeII	ACGT	1 cut(s)	258
MalI	GATC	3 cut(s)	186, 203, 278
MbiI	CCGCTC	1 cut(s)	228
MboI	GATC	3 cut(s)	184, 201, 276
MboII	GAAGA	2 cut(s)	122, 125
MhlI	GDGCHC	2 cut(s)	95, 199
MluCI	AATT	1 cut(s)	328
MlyI	GAGTC	1 cut(s)	243
MmeI	TCCRAC	1 cut(s)	339
MnlI	CCTC	9 cut(s)	34, 37, 109, 109, 118, 127, 160, 329, 334
MroI	TCCGGA	1 cut(s)	29
MseI	TTAA	1 cut(s)	150
MspI	CCGG	2 cut(s)	16, 30
MspR9I	CCNGG	2 cut(s)	16, 17
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	3 cut(s)	90, 128, 162
NciI	CCSGG	2 cut(s)	16, 17
NdeII	GATC	3 cut(s)	184, 201, 276
NlaIII	CATG	3 cut(s)	10, 49, 250
NlaIV	GGNNCC	3 cut(s)	143, 161, 191
NmeAIII	GCCGAG	1 cut(s)	148
PaeR7I	CTCGAG	1 cut(s)	231
PagI	TCATGA	1 cut(s)	6
PaqCI	CACCTGC	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	20, 38
PkrI	GCNGC	1 cut(s)	83
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PspN4I	GGNNCC	3 cut(s)	143, 161, 191
PspPI	GGNCC	1 cut(s)	142
RsaI	GTAC	1 cut(s)	171
RsaNI	GTAC	1 cut(s)	170
SalI	GTCGAC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	150
SatI	GCNGC	1 cut(s)	82
Sau3AI	GATC	3 cut(s)	184, 201, 276
Sau96I	GGNCC	1 cut(s)	142
SchI	GAGTC	1 cut(s)	243
ScrFI	CCNGG	2 cut(s)	16, 17
SduI	GDGCHC	2 cut(s)	95, 199
SetI	ASST	8 cut(s)	138, 161, 171, 213, 261, 300, 321, 341
SfaNI	GCATC	1 cut(s)	118
Sfr274I	CTCGAG	1 cut(s)	231
SinI	GGWCC	1 cut(s)	142
SlaI	CTCGAG	1 cut(s)	231
SmaI	CCCGGG	1 cut(s)	17
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
Sse9I	AATT	1 cut(s)	328
SsiI	CCGC	5 cut(s)	131, 154, 163, 226, 352
SspMI	CTAG	1 cut(s)	385
StyD4I	CCNGG	2 cut(s)	14, 15
StyI	CCWWGG	1 cut(s)	294
TaiI	ACGT	1 cut(s)	261
TaqI	TCGA	3 cut(s)	41, 105, 232
TaqII	GACCGA	1 cut(s)	91
TasI	AATT	1 cut(s)	328
TfiI	GAWTC	2 cut(s)	20, 38
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TseI	GCWGC	1 cut(s)	81
TspMI	CCCGGG	1 cut(s)	15
VpaK11BI	GGWCC	1 cut(s)	142
XhoI	CTCGAG	1 cut(s)	231
XmaI	CCCGGG	1 cut(s)	15
XmiI	GTMKAC	1 cut(s)	105
XspI	CTAG	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.