Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007141

Physical Location & Seq

Genomic Coordinates Forward (+)

18861526 .. 18863435

Gene Structure 1910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g24450.t7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGACCACCCACGATTCCTCCTCCGGGCTCGACTCTTCCAGCATGGACGATCAACCCTCCACTAAACGCACCGTTTCACTCGACCCGGAACCCGAACCCGGACCCGGTGGCGAGGCCTGGGTCGACAACTTCAACCGCAGCTTCCGCCAGGTCCAGGCCGTCCTCGACCGCAACCGCGCCCTCATCCAGCAAGTCAACGACAACCACCAGTCTCGGATTCCTGCCAACATGGTCAAGAACGTCGCCCTCATCCAGGAAATCAACGGCAACATCTCCAAGGTCGTTTCCCTCTACTCCGACCTGTCGTCTGATTTCTCCTCCGTCTTTCGCAACAAGGACGGCGACGACAAGCCCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009628 GO:0009639 GO:0009648 GO:0009649 GO:0009791 GO:0009909 GO:0009987 GO:0010017 GO:0010114 GO:0010228 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0042752 GO:0042753 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048518 GO:0048573 GO:0048580 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051716 GO:0061458 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0080167 GO:0104004 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1313

Protein Analysis

120

Amino Acids

13.13

Weight (kDa)

4.82

Isoelectric Point (pI)

49.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Elf4	PF07011	40 - 115	6.1e-37	Early Flowering 4 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007141)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40080
fragaria_vesca	FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450 FvH4_7g24450
malus_domestica	MD01G1152700.v1.1
prunus_persica	Prupe.2G249800_v2.0.a1
pyrus_communis	pycom07g20010
rosa_chinensis	RchiOBHm_Chr1g0370131
rosa_laevigata	RLG00000027071
rosa_multiflora	Rmu_sc0005056.1_g000001 Rmu_sc0011509.1_g000004
rosa_roxburghii	Rroxscaffold_4G00286790
rosa_rugosa	Rorug01G0354400
rosa_samantha	Rh1AG362900 Rh1BG326100 Rh1CG339400 Rh1DG356600
rosa_wichuraiana	Rw1G031940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	123
AccII	CGCG	1 cut(s)	177
AciI	CCGC	4 cut(s)	136, 145, 169, 175
AfiI	CCNNNNNNNGG	5 cut(s)	24, 98, 104, 154, 253
AgsI	TTSAA	1 cut(s)	133
AhdI	GACNNNNNGTC	1 cut(s)	304
AjnI	CCWGG	4 cut(s)	116, 147, 153, 252
AluBI	AGCT	1 cut(s)	141
AluI	AGCT	1 cut(s)	141
Alw26I	GTCTC	1 cut(s)	216
AoxI	GGCC	2 cut(s)	114, 156
ApeKI	GCWGC	1 cut(s)	138
AspLEI	GCGC	1 cut(s)	179
AspS9I	GGNCC	2 cut(s)	101, 151
AsuC2I	CCSGG	4 cut(s)	25, 86, 99, 105
AvaII	GGWCC	2 cut(s)	101, 151
BanII	GRGCYC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	150
BceAI	ACGGC	3 cut(s)	143, 280, 355
BciT130I	CCWGG	4 cut(s)	118, 149, 155, 254
BcnI	CCSGG	4 cut(s)	25, 86, 99, 105
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	1 cut(s)	358
BisI	GCNGC	1 cut(s)	139
BlsI	GCNGC	1 cut(s)	140
Bme1390I	CCNGG	8 cut(s)	25, 86, 99, 105, 118, 149, 155, 254
Bme18I	GGWCC	2 cut(s)	101, 151
BmeRI	GACNNNNNGTC	1 cut(s)	304
BmgT120I	GGNCC	2 cut(s)	101, 151
BmiI	GGNNCC	2 cut(s)	90, 103
BmrFI	CCNGG	8 cut(s)	25, 86, 99, 105, 118, 149, 155, 254
BpuMI	CCSGG	4 cut(s)	25, 86, 99, 105
BsaJI	CCNNGG	2 cut(s)	117, 276
BsaXI	ACNNNNNCTCC	1 cut(s)	32
Bsc4I	CCNNNNNNNGG	5 cut(s)	24, 98, 104, 154, 253
Bse1I	ACTGG	1 cut(s)	208
BseBI	CCWGG	4 cut(s)	118, 149, 155, 254
BseDI	CCNNGG	2 cut(s)	117, 276
BseGI	GGATG	2 cut(s)	183, 249
BseLI	CCNNNNNNNGG	5 cut(s)	24, 98, 104, 154, 253
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	2 cut(s)	10, 307
BseXI	GCAGC	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	177
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	2 cut(s)	116, 158
BsiEI	CGRYCG	1 cut(s)	169
BsiSI	CCGG	4 cut(s)	24, 86, 99, 105
BslI	CCNNNNNNNGG	5 cut(s)	24, 98, 104, 154, 253
BsmAI	GTCTC	1 cut(s)	216
BsnI	GGCC	2 cut(s)	116, 158
Bsp1286I	GDGCHC	1 cut(s)	30
Bsp143I	GATC	1 cut(s)	49
BspACI	CCGC	4 cut(s)	136, 145, 169, 175
BspANI	GGCC	2 cut(s)	116, 158
BspFNI	CGCG	1 cut(s)	177
BspLI	GGNNCC	2 cut(s)	90, 103
BsrI	ACTGG	1 cut(s)	208
BssECI	CCNNGG	2 cut(s)	117, 276
BssMI	GATC	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	276
Bst2UI	CCWGG	4 cut(s)	118, 149, 155, 254
Bst4CI	ACNGT	1 cut(s)	73
Bst6I	CTCTTC	1 cut(s)	40
BstENI	CCTNNNNNAGG	1 cut(s)	251
BstF5I	GGATG	2 cut(s)	183, 249
BstFNI	CGCG	1 cut(s)	177
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	1 cut(s)	52
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	49
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstNI	CCWGG	4 cut(s)	118, 149, 155, 254
BstSCI	CCNGG	8 cut(s)	23, 84, 97, 103, 116, 147, 153, 252
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	150
BsuRI	GGCC	2 cut(s)	116, 158
BtsCI	GGATG	2 cut(s)	183, 249
CfoI	GCGC	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	101, 151
CviAII	CATG	2 cut(s)	43, 229
CviJI	RGCY	5 cut(s)	28, 116, 141, 158, 352
CviKI_1	RGCY	5 cut(s)	28, 116, 141, 158, 352
DpnI	GATC	1 cut(s)	51
DpnII	GATC	1 cut(s)	49
DriI	GACNNNNNGTC	1 cut(s)	304
Eam1104I	CTCTTC	1 cut(s)	40
Eam1105I	GACNNNNNGTC	1 cut(s)	304
EarI	CTCTTC	1 cut(s)	40
EciI	GGCGGA	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	276
Eco147I	AGGCCT	1 cut(s)	116
Eco24I	GRGCYC	1 cut(s)	30
Eco47I	GGWCC	2 cut(s)	101, 151
EcoNI	CCTNNNNNAGG	1 cut(s)	251
EcoRII	CCWGG	4 cut(s)	116, 147, 153, 252
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	2 cut(s)	46, 232
FaiI	YATR	2 cut(s)	44, 230
FatI	CATG	2 cut(s)	42, 228
FblI	GTMKAC	1 cut(s)	123
Fnu4HI	GCNGC	1 cut(s)	139
FokI	GGATG	2 cut(s)	170, 236
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	1 cut(s)	139
FspBI	CTAG	1 cut(s)	358
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	1 cut(s)	139
HaeIII	GGCC	2 cut(s)	116, 158
HapII	CCGG	4 cut(s)	24, 86, 99, 105
HhaI	GCGC	1 cut(s)	179
Hin1II	CATG	2 cut(s)	46, 232
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HincII	GTYRAC	2 cut(s)	124, 196
HindII	GTYRAC	2 cut(s)	124, 196
HinfI	GANTC	3 cut(s)	14, 32, 217
HpaII	CCGG	4 cut(s)	24, 86, 99, 105
Hpy166II	GTNNAC	2 cut(s)	124, 196
Hpy188I	TCNGA	3 cut(s)	216, 298, 310
Hpy188III	TCNNGA	1 cut(s)	235
Hpy8I	GTNNAC	2 cut(s)	124, 196
Hpy99I	CGWCG	2 cut(s)	245, 347
HpyCH4III	ACNGT	1 cut(s)	73
HpyCH4IV	ACGT	1 cut(s)	240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpySE526I	ACGT	1 cut(s)	240
Hsp92II	CATG	2 cut(s)	46, 232
HspAI	GCGC	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	49
Lsp1109I	GCAGC	1 cut(s)	150
MaeI	CTAG	1 cut(s)	358
MaeII	ACGT	1 cut(s)	240
MalI	GATC	1 cut(s)	51
MboI	GATC	1 cut(s)	49
MboII	GAAGA	1 cut(s)	27
MhlI	GDGCHC	1 cut(s)	30
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	321
MnlI	CCTC	9 cut(s)	28, 31, 67, 106, 173, 191, 257, 299, 328
MspI	CCGG	4 cut(s)	24, 86, 99, 105
MspR9I	CCNGG	8 cut(s)	25, 86, 99, 105, 118, 149, 155, 254
MvaI	CCWGG	4 cut(s)	118, 149, 155, 254
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	144
NciI	CCSGG	4 cut(s)	25, 86, 99, 105
NdeII	GATC	1 cut(s)	49
NlaIII	CATG	2 cut(s)	46, 232
NlaIV	GGNNCC	2 cut(s)	90, 103
PceI	AGGCCT	1 cut(s)	116
PfeI	GAWTC	2 cut(s)	14, 217
PfoI	TCCNGGA	1 cut(s)	252
PkrI	GCNGC	1 cut(s)	140
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
Psp6I	CCWGG	4 cut(s)	116, 147, 153, 252
PspGI	CCWGG	4 cut(s)	116, 147, 153, 252
PspN4I	GGNNCC	2 cut(s)	90, 103
PspPI	GGNCC	2 cut(s)	101, 151
SalI	GTCGAC	1 cut(s)	122
SatI	GCNGC	1 cut(s)	139
Sau3AI	GATC	1 cut(s)	49
Sau96I	GGNCC	2 cut(s)	101, 151
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	8 cut(s)	25, 86, 99, 105, 118, 149, 155, 254
SduI	GDGCHC	1 cut(s)	30
SetI	ASST	5 cut(s)	143, 153, 243, 282, 303
SinI	GGWCC	2 cut(s)	101, 151
SseBI	AGGCCT	1 cut(s)	116
SsiI	CCGC	4 cut(s)	136, 145, 169, 175
SspMI	CTAG	1 cut(s)	358
StuI	AGGCCT	1 cut(s)	116
StyD4I	CCNGG	8 cut(s)	23, 84, 97, 103, 116, 147, 153, 252
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	73
TaiI	ACGT	1 cut(s)	243
TaqI	TCGA	4 cut(s)	30, 81, 123, 165
TfiI	GAWTC	2 cut(s)	14, 217
TseI	GCWGC	1 cut(s)	138
TspGWI	ACGGA	1 cut(s)	310
VpaK11BI	GGWCC	2 cut(s)	101, 151
XagI	CCTNNNNNAGG	1 cut(s)	251
XmiI	GTMKAC	1 cut(s)	123
XspI	CTAG	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.