AT2G40200

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010198
Physical Location & Seq
Forward (+)
16791010 .. 16792376
1367 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G40200.1

Sequence Viewer

Length: 765 bp
ATGGAGAATTCTTACGACTCAAGCAAGTGGTCTGATTCTACAACTCCATATATGGTCTCGTGGTCACTACAATCTGAGTCCTCTGATTCTGATTGGAACCGGTTTAATCTTGGCTTCTCTTCTTCCTCCTTCGGTGGTAATTTCCCGGCTGATGATTGTGTCGGTGGGATCGAAAAAGCTGAGTCACTTTCAAGAAGCCACCGTCTAGCGGAGAAAAGACGCCGTGACCGGATAAATTCTCACCTCACTGCTCTCCGGAAACTTGTCCCCAATTCCGACAAGTTAGACAAAGCAGCTCTATTAGCAACAGTGATTGAACAAGTGAAAGAACTCAAACAAAAAGCAGCAGAATCACCAATCTTCCAAGATCTTCCAACAGAAGCAGATGAAGTAACTGTACAGCCTGAAACTATCTCTGACTTTGAATCAAACACAAACACAATCATCTTCAAAGCTTCTTTTTGCTGCGAAGATCAACCCGAAGCAATCTCAGAGATTATTAGAGTTCTCACAAAGCTTCAACTCGAAACAATCCAAGCAGAGATAATCTCTGTTGGGGGAAGAATGAGAATCAATTTCATCTTAAAAGATAGCAACTGCAATGAGACTACAAACATAGCTGCTTCAGCAAAAGCTTTGAAGCAATCTCTCTGCTCTGCGTTAAATCGAATCACATCTTCTTCTACGACTACTTCTTCAGTTTGCAGAATCAGAAGTAAAAGACAGAGATGGTTCCTCTCTTCTCATTATTCTCACAATGAATAA

Protein Analysis

254

Amino Acids

28.41

Weight (kDa)

6.15

Isoelectric Point (pI)

62.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 65 - 111 5.6e-11 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 255
AciI CCGC 1 cut(s) 209
AclWI GGATC 1 cut(s) 176
AcsI RAATTY 2 cut(s) 7, 235
AcuI CTGAAG 2 cut(s) 609, 681
AcyI GRCGYC 1 cut(s) 220
AfaI GTAC 1 cut(s) 399
AfiI CCNNNNNNNGG 1 cut(s) 208
AgeI ACCGGT 1 cut(s) 99
AgsI TTSAA 6 cut(s) 192, 317, 425, 451, 521, 640
AluBI AGCT 6 cut(s) 179, 296, 455, 517, 620, 635
AluI AGCT 6 cut(s) 179, 296, 455, 517, 620, 635
Alw26I GTCTC 2 cut(s) 61, 599
AlwI GGATC 1 cut(s) 176
Aor13HI TCCGGA 1 cut(s) 255
ApeKI GCWGC 4 cut(s) 293, 344, 465, 620
ApoI RAATTY 2 cut(s) 7, 235
AsiGI ACCGGT 1 cut(s) 99
AsuC2I CCSGG 1 cut(s) 146
AsuHPI GGTGA 2 cut(s) 233, 345
BarI GAAGNNNNNNTAC 2 cut(s) 381, 413
BauI CACGAG 1 cut(s) 58
BbvI GCAGC 4 cut(s) 305, 356, 452, 607
BccI CCATC 1 cut(s) 723
BceAI ACGGC 1 cut(s) 207
BcnI CCSGG 1 cut(s) 146
BcoDI GTCTC 2 cut(s) 61, 599
BfaI CTAG 1 cut(s) 206
BglII AGATCT 1 cut(s) 367
BisI GCNGC 4 cut(s) 294, 345, 466, 621
BlsI GCNGC 4 cut(s) 295, 346, 467, 622
Bme1390I CCNGG 1 cut(s) 146
BmiI GGNNCC 2 cut(s) 98, 734
BmrFI CCNGG 1 cut(s) 146
BplI GAGNNNNNCTC 2 cut(s) 533, 565
BpuEI CTTGAG 1 cut(s) 4
BpuMI CCSGG 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 220
BsaI GGTCTC 1 cut(s) 61
BsaWI WCCGGW 3 cut(s) 99, 228, 255
Bsc4I CCNNNNNNNGG 1 cut(s) 208
Bse118I RCCGGY 1 cut(s) 99
Bse3DI GCAATG 1 cut(s) 607
BseAI TCCGGA 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMI GCAATG 1 cut(s) 607
BseMII CTCAG 3 cut(s) 66, 171, 504
BseXI GCAGC 4 cut(s) 305, 356, 452, 607
BshTI ACCGGT 1 cut(s) 99
BsiSI CCGG 4 cut(s) 100, 146, 229, 256
BslFI GGGAC 1 cut(s) 251
BslI CCNNNNNNNGG 1 cut(s) 208
BsmAI GTCTC 2 cut(s) 61, 599
BsmFI GGGAC 1 cut(s) 251
Bso31I GGTCTC 1 cut(s) 61
Bsp13I TCCGGA 1 cut(s) 255
Bsp1407I TGTACA 1 cut(s) 397
Bsp143I GATC 3 cut(s) 168, 367, 472
BspACI CCGC 1 cut(s) 209
BspCNI CTCAG 3 cut(s) 67, 172, 503
BspEI TCCGGA 1 cut(s) 255
BspLI GGNNCC 2 cut(s) 98, 734
BspPI GGATC 1 cut(s) 176
BspTNI GGTCTC 1 cut(s) 61
BsrDI GCAATG 1 cut(s) 607
BsrFI RCCGGY 1 cut(s) 99
BsrGI TGTACA 1 cut(s) 397
BssAI RCCGGY 1 cut(s) 99
BssMI GATC 3 cut(s) 168, 367, 472
BssNI GRCGYC 1 cut(s) 220
BssSI CACGAG 1 cut(s) 58
Bst2BI CACGAG 1 cut(s) 58
Bst4CI ACNGT 3 cut(s) 203, 310, 397
Bst6I CTCTTC 2 cut(s) 124, 745
BstACI GRCGYC 1 cut(s) 220
BstAUI TGTACA 1 cut(s) 397
BstDEI CTNAG 3 cut(s) 75, 180, 490
BstKTI GATC 3 cut(s) 171, 370, 475
BstMAI GTCTC 2 cut(s) 61, 599
BstMBI GATC 3 cut(s) 168, 367, 472
BstMWI GCNNNNNNNGC 2 cut(s) 302, 626
BstSCI CCNGG 1 cut(s) 144
BstV1I GCAGC 4 cut(s) 305, 356, 452, 607
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BtsI GCAGTG 1 cut(s) 246
BtsIMutI CAGTG 2 cut(s) 246, 315
Cfr10I RCCGGY 1 cut(s) 99
CseI GACGC 1 cut(s) 228
Csp6I GTAC 1 cut(s) 398
CspAI ACCGGT 1 cut(s) 99
CviQI GTAC 1 cut(s) 398
DdeI CTNAG 3 cut(s) 75, 180, 490
DpnI GATC 3 cut(s) 170, 369, 474
DpnII GATC 3 cut(s) 168, 367, 472
Eam1104I CTCTTC 2 cut(s) 124, 745
EarI CTCTTC 2 cut(s) 124, 745
Eco31I GGTCTC 1 cut(s) 61
Eco57I CTGAAG 2 cut(s) 609, 681
EcoRI GAATTC 1 cut(s) 7
FaiI YATR 4 cut(s) 49, 51, 53, 617
FaqI GGGAC 1 cut(s) 251
Fnu4HI GCNGC 4 cut(s) 294, 345, 466, 621
Fsp4HI GCNGC 4 cut(s) 294, 345, 466, 621
FspBI CTAG 1 cut(s) 206
GluI GCNGC 4 cut(s) 294, 345, 466, 621
HapII CCGG 4 cut(s) 100, 146, 229, 256
HgaI GACGC 1 cut(s) 228
Hin1I GRCGYC 1 cut(s) 220
HindIII AAGCTT 3 cut(s) 453, 515, 633
HpaII CCGG 4 cut(s) 100, 146, 229, 256
HphI GGTGA 2 cut(s) 233, 345
Hpy188I TCNGA 8 cut(s) 34, 76, 85, 91, 277, 418, 493, 713
Hpy188III TCNNGA 2 cut(s) 192, 256
HpyAV CCTTC 1 cut(s) 139
HpyCH4III ACNGT 3 cut(s) 203, 310, 397
HpyCH4V TGCA 2 cut(s) 600, 705
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 626
HpyF3I CTNAG 3 cut(s) 75, 180, 490
Hsp92I GRCGYC 1 cut(s) 220
Kpn2I TCCGGA 1 cut(s) 255
Kzo9I GATC 3 cut(s) 168, 367, 472
LpnPI CCDG 5 cut(s) 113, 159, 242, 269, 417
Lsp1109I GCAGC 4 cut(s) 305, 356, 452, 607
MaeI CTAG 1 cut(s) 206
MaeIII GTNAC 4 cut(s) 63, 183, 224, 391
MalI GATC 3 cut(s) 170, 369, 474
MboI GATC 3 cut(s) 168, 367, 472
MflI RGATCY 1 cut(s) 367
MluCI AATT 5 cut(s) 7, 139, 235, 271, 574
MlyI GAGTC 3 cut(s) 11, 86, 191
MmeI TCCRAC 2 cut(s) 300, 398
MnlI CCTC 4 cut(s) 91, 136, 254, 746
MroI TCCGGA 1 cut(s) 255
MseI TTAA 3 cut(s) 105, 584, 662
MspI CCGG 4 cut(s) 100, 146, 229, 256
MspR9I CCNGG 1 cut(s) 146
MwoI GCNNNNNNNGC 2 cut(s) 302, 626
NciI CCSGG 1 cut(s) 146
NdeII GATC 3 cut(s) 168, 367, 472
NlaIV GGNNCC 2 cut(s) 98, 734
NmuCI GTSAC 3 cut(s) 63, 183, 224
PcsI WCGNNNNNNNCGW 1 cut(s) 168
PfeI GAWTC 7 cut(s) 35, 86, 350, 425, 570, 669, 708
PinAI ACCGGT 1 cut(s) 99
PkrI GCNGC 4 cut(s) 295, 346, 467, 622
PleI GAGTC 3 cut(s) 11, 85, 190
PpsI GAGTC 3 cut(s) 11, 85, 190
PspN4I GGNNCC 2 cut(s) 98, 734
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 1 cut(s) 399
RsaNI GTAC 1 cut(s) 398
SaqAI TTAA 3 cut(s) 105, 584, 662
SatI GCNGC 4 cut(s) 294, 345, 466, 621
Sau3AI GATC 3 cut(s) 168, 367, 472
SchI GAGTC 3 cut(s) 11, 86, 191
ScrFI CCNGG 1 cut(s) 146
SetI ASST 7 cut(s) 181, 246, 298, 457, 519, 622, 637
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
Sse9I AATT 5 cut(s) 7, 139, 235, 271, 574
SsiI CCGC 1 cut(s) 209
SspMI CTAG 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 144
TaaI ACNGT 3 cut(s) 203, 310, 397
TaqI TCGA 3 cut(s) 171, 525, 667
TasI AATT 5 cut(s) 7, 139, 235, 271, 574
TatI WGTACW 1 cut(s) 397
TfiI GAWTC 7 cut(s) 35, 86, 350, 425, 570, 669, 708
Tru1I TTAA 3 cut(s) 105, 584, 662
Tru9I TTAA 3 cut(s) 105, 584, 662
TscAI CASTG 2 cut(s) 253, 315
TseFI GTSAC 3 cut(s) 63, 183, 224
TseI GCWGC 4 cut(s) 293, 344, 465, 620
Tsp45I GTSAC 3 cut(s) 63, 183, 224
TspDTI ATGAA 2 cut(s) 402, 568
TspRI CASTG 2 cut(s) 253, 315
XapI RAATTY 2 cut(s) 7, 235
XspI CTAG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.