Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0010198

Physical Location & Seq

Genomic Coordinates Forward (+)

26313651 .. 26315330

Gene Structure 1680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1155000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGATCAGAACTATTATTATGCTGGGACTGGAGTGCCAAGCTGGTCACATCAATTCAACTCTGCTGCAGCTGCTGCTGCAGTAAGCAATGAGTCTTCTTCCAGCTTTCTGGTTCCATGGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTCCTCCTCATGTATCGAGCTCTAATCAATTCCAGTTTTGTGGGTTGCCGCCTAGTTCGTGGTCTTCGACGGCGGCGGATGGTTTTGAAGAAGATAGAGCTGCATCTGCTTCGAGGAGCCACAGCCAGGCTGAGAAAAGGCGCAGAGATAGAATCAACGCACAGCTTGCTACTCTTAGGAAACTCATTCCCAAGTCCGACAAGATGGACAAGGCGGCTCTATTAGGAAGCGTGATCGATCATGTGAAGGATCTAAAGCGAAAAGCGATGGAAGTGAGCAAATCCTTCGTAGTTCCAACCGAAGTTGATGAAGTAACCATCGACTGTGATCCTGCTCATACTGTAAACTCCGCCACCAGTAGCACTAACAAAAGCCGGGGGAGTTTTCTCATAAGGGCATCCGTCTGCTGCGACGACCGGCCGGAACTCTTCTCGGAGCTCATTCAAGTCCTCAAAGGCCTAAAACTGACGGCTGTTCGTGCCGACATGGCGAGCGTGGGAGGAAGAATCAAAAGTGTTTTGGTGCTTTGTTCTAAGGACGGTGAAGAGGCTGTTTGCACGAGCACTCTCAAACAATCACTCAAGTTGGTTTTGAGTAAACTTGCCGCGTCGTCCATGGCGCCAAACTGTCGGATTCGAAGCAAGAGGCAGAGGTTTTTCTTGCCATTCCATTGCCCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

280

Amino Acids

30.27

Weight (kDa)

9.22

Isoelectric Point (pI)

53.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	91 - 138	1.3e-11	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40200
fragaria_vesca	FvH4_7g24720
malus_domestica	MD01G1155000.v1.1 MD07G1224100.v1.1
prunus_persica	Prupe.2G252600_v2.0.a1
pyrus_communis	pycom01g17240 pycom07g20270
rosa_chinensis	RchiOBHm_Chr1g0370561
rosa_laevigata	RLG00000027026
rosa_multiflora	Rmu_co8359043.1_g000001 Rmu_sc0002021.1_g000016 Rmu_sc0013283.1_g000001 Rmu_sc0026468.1_g000001 Rmu_sc0032061.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286420
rosa_rugosa	Rorug01G0357600
rosa_samantha	Rh1AG367000 Rh1BG330500 Rh1CG344800 Rh1DG362000
rosa_wichuraiana	Rw1G032300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	775
AccII	CGCG	1 cut(s)	764
AciI	CCGC	6 cut(s)	206, 230, 233, 371, 507, 762
AclWI	GGATC	3 cut(s)	12, 414, 479
AcoI	YGGCCR	1 cut(s)	575
AcyI	GRCGYC	1 cut(s)	776
AfiI	CCNNNNNNNGG	1 cut(s)	283
AgsI	TTSAA	3 cut(s)	58, 245, 602
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	7 cut(s)	42, 71, 105, 177, 257, 322, 595
AluI	AGCT	7 cut(s)	42, 71, 105, 177, 257, 322, 595
Alw21I	GWGCWC	3 cut(s)	179, 597, 722
AlwI	GGATC	3 cut(s)	12, 414, 479
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	3 cut(s)	119, 575, 613
ApeKI	GCWGC	7 cut(s)	65, 68, 71, 74, 77, 257, 564
AspLEI	GCGC	2 cut(s)	300, 778
AsuC2I	CCSGG	1 cut(s)	533
AsuHPI	GGTGA	1 cut(s)	710
AsuII	TTCGAA	1 cut(s)	793
BanI	GGYRCC	1 cut(s)	775
BanII	GRGCYC	2 cut(s)	179, 597
BauI	CACGAG	1 cut(s)	715
BbsI	GAAGAC	2 cut(s)	87, 213
Bbv12I	GWGCWC	3 cut(s)	179, 597, 722
BbvI	GCAGC	7 cut(s)	52, 58, 61, 64, 80, 244, 551
BccI	CCATC	4 cut(s)	230, 355, 418, 482
BceAI	ACGGC	2 cut(s)	243, 642
BcgI	CGANNNNNNTGC	4 cut(s)	249, 283, 424, 458
BciT130I	CCWGG	1 cut(s)	284
BcnI	CCSGG	1 cut(s)	533
BfaI	CTAG	1 cut(s)	210
BfmI	CTRYAG	2 cut(s)	66, 78
BfoI	RGCGCY	1 cut(s)	779
BglI	GCCNNNNNGGC	1 cut(s)	644
Bme1390I	CCNGG	2 cut(s)	284, 533
BmiI	GGNNCC	3 cut(s)	114, 275, 777
BmrFI	CCNGG	2 cut(s)	284, 533
BmsI	GCATC	2 cut(s)	269, 563
BpiI	GAAGAC	2 cut(s)	87, 213
BpmI	CTGGAG	1 cut(s)	51
Bpu14I	TTCGAA	1 cut(s)	793
BpuEI	CTTGAG	1 cut(s)	722
BpuMI	CCSGG	1 cut(s)	533
Bsa29I	ATCGAT	1 cut(s)	393
BsaHI	GRCGYC	1 cut(s)	776
BsaJI	CCNNGG	3 cut(s)	116, 532, 771
Bsc4I	CCNNNNNNNGG	1 cut(s)	283
Bse118I	RCCGGY	1 cut(s)	573
Bse1I	ACTGG	3 cut(s)	34, 190, 513
Bse3DI	GCAATG	2 cut(s)	94, 826
BseBI	CCWGG	1 cut(s)	284
BseCI	ATCGAT	1 cut(s)	393
BseDI	CCNNGG	3 cut(s)	116, 532, 771
BseGI	GGATG	2 cut(s)	241, 554
BseLI	CCNNNNNNNGG	1 cut(s)	283
BseMI	GCAATG	2 cut(s)	94, 826
BseMII	CTCAG	1 cut(s)	279
BseNI	ACTGG	3 cut(s)	34, 190, 513
BseX3I	CGGCCG	1 cut(s)	575
BseXI	GCAGC	7 cut(s)	52, 58, 61, 64, 80, 244, 551
BseYI	CCCAGC	1 cut(s)	23
Bsh1236I	CGCG	1 cut(s)	764
Bsh1285I	CGRYCG	2 cut(s)	574, 578
BshFI	GGCC	3 cut(s)	121, 577, 615
BshNI	GGYRCC	1 cut(s)	775
BshVI	ATCGAT	1 cut(s)	393
BsiEI	CGRYCG	2 cut(s)	574, 578
BsiHKAI	GWGCWC	3 cut(s)	179, 597, 722
BsiSI	CCGG	3 cut(s)	532, 574, 578
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	283
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	3 cut(s)	121, 577, 615
Bsp119I	TTCGAA	1 cut(s)	793
Bsp1286I	GDGCHC	3 cut(s)	179, 597, 722
Bsp143I	GATC	5 cut(s)	4, 390, 394, 406, 484
Bsp19I	CCATGG	2 cut(s)	116, 771
BspACI	CCGC	6 cut(s)	206, 230, 233, 371, 507, 762
BspANI	GGCC	3 cut(s)	121, 577, 615
BspCNI	CTCAG	1 cut(s)	280
BspDI	ATCGAT	1 cut(s)	393
BspFNI	CGCG	1 cut(s)	764
BspLI	GGNNCC	3 cut(s)	114, 275, 777
BspMAI	CTGCAG	2 cut(s)	70, 82
BspPI	GGATC	3 cut(s)	12, 414, 479
BspT104I	TTCGAA	1 cut(s)	793
BspT107I	GGYRCC	1 cut(s)	775
BsrDI	GCAATG	2 cut(s)	94, 826
BsrFI	RCCGGY	1 cut(s)	573
BsrI	ACTGG	3 cut(s)	34, 190, 513
BssAI	RCCGGY	1 cut(s)	573
BssECI	CCNNGG	3 cut(s)	116, 532, 771
BssMI	GATC	5 cut(s)	4, 390, 394, 406, 484
BssNI	GRCGYC	1 cut(s)	776
BssSI	CACGAG	1 cut(s)	715
BssT1I	CCWWGG	2 cut(s)	116, 771
Bst2BI	CACGAG	1 cut(s)	715
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	4 cut(s)	482, 499, 698, 785
Bst6I	CTCTTC	3 cut(s)	159, 590, 696
BstACI	GRCGYC	1 cut(s)	776
BstAPI	GCANNNNNTGC	2 cut(s)	74, 323
BstBI	TTCGAA	1 cut(s)	793
BstC8I	GCNNGC	2 cut(s)	324, 649
BstDEI	CTNAG	3 cut(s)	288, 332, 690
BstDSI	CCRYGG	2 cut(s)	116, 771
BstF5I	GGATG	2 cut(s)	241, 554
BstFNI	CGCG	1 cut(s)	764
BstH2I	RGCGCY	1 cut(s)	779
BstHHI	GCGC	2 cut(s)	300, 778
BstKTI	GATC	5 cut(s)	7, 393, 397, 409, 487
BstMBI	GATC	5 cut(s)	4, 390, 394, 406, 484
BstMCI	CGRYCG	2 cut(s)	574, 578
BstMWI	GCNNNNNNNGC	7 cut(s)	71, 74, 77, 263, 323, 635, 644
BstNI	CCWGG	1 cut(s)	284
BstSCI	CCNGG	2 cut(s)	282, 531
BstSFI	CTRYAG	2 cut(s)	66, 78
BstUI	CGCG	1 cut(s)	764
BstV1I	GCAGC	7 cut(s)	52, 58, 61, 64, 80, 244, 551
BstV2I	GAAGAC	2 cut(s)	87, 213
BstX2I	RGATCY	1 cut(s)	406
BstXI	CCANNNNNNTGG	2 cut(s)	109, 197
BstYI	RGATCY	1 cut(s)	406
BstZI	CGGCCG	1 cut(s)	575
Bsu15I	ATCGAT	1 cut(s)	393
BsuRI	GGCC	3 cut(s)	121, 577, 615
BsuTUI	ATCGAT	1 cut(s)	393
BtgI	CCRYGG	2 cut(s)	116, 771
BtgZI	GCGATG	1 cut(s)	437
BtsCI	GGATG	2 cut(s)	241, 554
Cac8I	GCNNGC	2 cut(s)	324, 649
CaiI	CAGNNNCTG	1 cut(s)	74
CfoI	GCGC	2 cut(s)	300, 778
Cfr10I	RCCGGY	1 cut(s)	573
ClaI	ATCGAT	1 cut(s)	393
CseI	GACGC	1 cut(s)	753
CviAII	CATG	5 cut(s)	117, 167, 398, 643, 772
DdeI	CTNAG	3 cut(s)	288, 332, 690
DinI	GGCGCC	1 cut(s)	777
DpnI	GATC	5 cut(s)	6, 392, 396, 408, 486
DpnII	GATC	5 cut(s)	4, 390, 394, 406, 484
EaeI	YGGCCR	1 cut(s)	575
EagI	CGGCCG	1 cut(s)	575
Eam1104I	CTCTTC	3 cut(s)	159, 590, 696
EarI	CTCTTC	3 cut(s)	159, 590, 696
EciI	GGCGGA	2 cut(s)	248, 496
Ecl136II	GAGCTC	2 cut(s)	177, 595
EclXI	CGGCCG	1 cut(s)	575
Eco130I	CCWWGG	2 cut(s)	116, 771
Eco147I	AGGCCT	1 cut(s)	615
Eco24I	GRGCYC	2 cut(s)	179, 597
Eco52I	CGGCCG	1 cut(s)	575
Eco53kI	GAGCTC	2 cut(s)	177, 595
EcoICRI	GAGCTC	2 cut(s)	177, 595
EcoRII	CCWGG	1 cut(s)	282
EcoT14I	CCWWGG	2 cut(s)	116, 771
EcoT38I	GRGCYC	2 cut(s)	179, 597
EgeI	GGCGCC	1 cut(s)	777
EheI	GGCGCC	1 cut(s)	777
ErhI	CCWWGG	2 cut(s)	116, 771
FaeI	CATG	5 cut(s)	120, 170, 401, 646, 775
FaiI	YATR	8 cut(s)	21, 118, 168, 399, 495, 548, 644, 773
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	5 cut(s)	116, 166, 397, 642, 771
FokI	GGATG	2 cut(s)	248, 541
FriOI	GRGCYC	2 cut(s)	179, 597
FspBI	CTAG	1 cut(s)	210
GlaI	GCGC	2 cut(s)	299, 777
GsaI	CCCAGC	1 cut(s)	27
GsuI	CTGGAG	1 cut(s)	51
HaeII	RGCGCY	1 cut(s)	779
HaeIII	GGCC	3 cut(s)	121, 577, 615
HapII	CCGG	3 cut(s)	532, 574, 578
HgaI	GACGC	1 cut(s)	753
HhaI	GCGC	2 cut(s)	300, 778
Hin1I	GRCGYC	1 cut(s)	776
Hin1II	CATG	5 cut(s)	120, 170, 401, 646, 775
Hin6I	GCGC	2 cut(s)	298, 776
HinP1I	GCGC	2 cut(s)	298, 776
HinfI	GANTC	4 cut(s)	92, 309, 663, 790
HpaII	CCGG	3 cut(s)	532, 574, 578
HphI	GGTGA	1 cut(s)	710
Hpy166II	GTNNAC	2 cut(s)	502, 755
Hpy188I	TCNGA	4 cut(s)	9, 355, 592, 789
Hpy8I	GTNNAC	2 cut(s)	502, 755
Hpy99I	CGWCG	3 cut(s)	229, 572, 769
HpyAV	CCTTC	2 cut(s)	397, 451
HpyCH4III	ACNGT	4 cut(s)	482, 499, 698, 785
HpyCH4V	TGCA	4 cut(s)	68, 80, 260, 714
HpyF10VI	GCNNNNNNNGC	7 cut(s)	71, 74, 77, 263, 323, 635, 644
HpyF3I	CTNAG	3 cut(s)	288, 332, 690
Hsp92I	GRCGYC	1 cut(s)	776
Hsp92II	CATG	5 cut(s)	120, 170, 401, 646, 775
HspAI	GCGC	2 cut(s)	298, 776
KasI	GGCGCC	1 cut(s)	775
Kzo9I	GATC	5 cut(s)	4, 390, 394, 406, 484
LmnI	GCTCC	2 cut(s)	273, 592
Lsp1109I	GCAGC	7 cut(s)	52, 58, 61, 64, 80, 244, 551
LweI	GCATC	2 cut(s)	269, 563
MaeI	CTAG	1 cut(s)	210
MaeIII	GTNAC	2 cut(s)	45, 469
MalI	GATC	5 cut(s)	6, 392, 396, 408, 486
MboI	GATC	5 cut(s)	4, 390, 394, 406, 484
MboII	GAAGA	9 cut(s)	87, 90, 146, 213, 257, 260, 577, 672, 713
MflI	RGATCY	1 cut(s)	406
MhlI	GDGCHC	3 cut(s)	179, 597, 722
MluCI	AATT	3 cut(s)	53, 185, 835
Mly113I	GGCGCC	1 cut(s)	776
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	3 cut(s)	378, 476, 767
MseI	TTAA	1 cut(s)	838
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	3 cut(s)	532, 574, 578
MspR9I	CCNGG	2 cut(s)	284, 533
MvaI	CCWGG	1 cut(s)	284
MvnI	CGCG	1 cut(s)	764
MwoI	GCNNNNNNNGC	7 cut(s)	71, 74, 77, 263, 323, 635, 644
NarI	GGCGCC	1 cut(s)	776
NciI	CCSGG	1 cut(s)	533
NcoI	CCATGG	2 cut(s)	116, 771
NdeII	GATC	5 cut(s)	4, 390, 394, 406, 484
NlaIII	CATG	5 cut(s)	120, 170, 401, 646, 775
NlaIV	GGNNCC	3 cut(s)	114, 275, 777
NmuCI	GTSAC	1 cut(s)	45
NspV	TTCGAA	1 cut(s)	793
PceI	AGGCCT	1 cut(s)	615
PcsI	WCGNNNNNNNCGW	1 cut(s)	221
PfeI	GAWTC	3 cut(s)	309, 663, 790
PleI	GAGTC	1 cut(s)	100
PluTI	GGCGCC	1 cut(s)	779
PpsI	GAGTC	1 cut(s)	100
Psp124BI	GAGCTC	2 cut(s)	179, 597
Psp6I	CCWGG	1 cut(s)	282
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	3 cut(s)	114, 275, 777
PstI	CTGCAG	2 cut(s)	70, 82
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	406
PvuII	CAGCTG	1 cut(s)	71
SacI	GAGCTC	2 cut(s)	179, 597
SaqAI	TTAA	1 cut(s)	838
Sau3AI	GATC	5 cut(s)	4, 390, 394, 406, 484
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	2 cut(s)	284, 533
SduI	GDGCHC	3 cut(s)	179, 597, 722
SetI	ASST	8 cut(s)	44, 73, 107, 179, 259, 324, 597, 812
SfaNI	GCATC	2 cut(s)	269, 563
SfcI	CTRYAG	2 cut(s)	66, 78
SfoI	GGCGCC	1 cut(s)	777
SfuI	TTCGAA	1 cut(s)	793
SmlI	CTYRAG	1 cut(s)	737
SmoI	CTYRAG	1 cut(s)	737
Sse9I	AATT	3 cut(s)	53, 185, 835
SseBI	AGGCCT	1 cut(s)	615
SsiI	CCGC	6 cut(s)	206, 230, 233, 371, 507, 762
SspDI	GGCGCC	1 cut(s)	775
SspMI	CTAG	1 cut(s)	210
SstI	GAGCTC	2 cut(s)	179, 597
StuI	AGGCCT	1 cut(s)	615
StyD4I	CCNGG	2 cut(s)	282, 531
StyI	CCWWGG	2 cut(s)	116, 771
TaaI	ACNGT	4 cut(s)	482, 499, 698, 785
TaqI	TCGA	6 cut(s)	173, 224, 269, 393, 477, 793
TasI	AATT	3 cut(s)	53, 185, 835
TauI	GCSGC	4 cut(s)	208, 233, 374, 764
TfiI	GAWTC	3 cut(s)	309, 663, 790
Tru1I	TTAA	1 cut(s)	838
Tru9I	TTAA	1 cut(s)	838
TseFI	GTSAC	1 cut(s)	45
TseI	GCWGC	7 cut(s)	65, 68, 71, 74, 77, 257, 564
Tsp45I	GTSAC	1 cut(s)	45
TspDTI	ATGAA	1 cut(s)	480
TspGWI	ACGGA	1 cut(s)	547
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.