Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0010198

Physical Location & Seq

Genomic Coordinates Forward (+)

26645532 .. 26647143

Gene Structure 1612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G252600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGAGAGTATGGTTTTAGAGAAGTGTTGGTTGTTTTTGGCTATGGAGAATTGTTATTGTGCTGGTCCTCAAGGGGCAACCTGGGCTCCCTACAACTCTGCTGCACTGAGCAATGAGTCTTCCAGCTTTCCACTTCCGTGGCCTCCTCATGCCTCCAGCTCTACCCAATTCCAGTTTTGTGGGTTCCCAAATTCTTGGTCTGCAACGGCTGAAGGTGCTGATGAAGAAGACAGAGCTGCAACTGCTTCAAAGAGCCACAGCCAAGCAGAGAAAAGGCGCAGAGATAGAATCAATGCACAGCTTGCAACTCTAAGGAAACTAATTCCCAAGTCCGACAAGATGGACAAGGCGGCTCTGTTGGGAAGTGTGATCGATCATGTGAAGGATCTAAAGCGAAAAGCAATGGAAGTCAGCAAAGCCTTCATGGTTCCAACTGAAATGGATGAAATAACCATCGACTCTGATCCTGCTCAGGCTGCTGCAAACTCCGGCAGCAACAATATTAATATGAACAAAAGCAGGTGCAGTATCGTCATAAGGGCATCTGTTTGCTGCGATGACAGGCCAGAACTGTTCTCGGAGCTCATTCAAGTGCTCAAAGGCCTAAAGCTGACAGCAGTGAGAGCAGACATGGCAAGTGTGGGTGGCAGAATCAAAAGCGTTTTGGTCCTCTGTAAAGATGGTGAAGAAGATGAGGCTCTCTGCATAAGCACTCTCAAGCAGTCACTTAAGTTGGTTTTGAGTAAAATTTGTGCATCATCTATGGCACCAAACTGTCGAATTAGAAGCAAGAGGCAGAGGTTTTTCTTGCCATTTCAATACCCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

277

Amino Acids

30.39

Weight (kDa)

8.6

Isoelectric Point (pI)

42.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40200
fragaria_vesca	FvH4_7g24720
malus_domestica	MD01G1155000.v1.1 MD07G1224100.v1.1
prunus_persica	Prupe.2G252600_v2.0.a1
pyrus_communis	pycom01g17240 pycom07g20270
rosa_chinensis	RchiOBHm_Chr1g0370561
rosa_laevigata	RLG00000027026
rosa_multiflora	Rmu_co8359043.1_g000001 Rmu_sc0002021.1_g000016 Rmu_sc0013283.1_g000001 Rmu_sc0026468.1_g000001 Rmu_sc0032061.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286420
rosa_rugosa	Rorug01G0357600
rosa_samantha	Rh1AG367000 Rh1BG330500 Rh1CG344800 Rh1DG362000
rosa_wichuraiana	Rw1G032300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	510
Acc36I	ACCTGC	1 cut(s)	510
AccB1I	GGYRCC	1 cut(s)	766
AciI	CCGC	1 cut(s)	350
AclWI	GGATC	2 cut(s)	393, 458
AcsI	RAATTY	2 cut(s)	190, 747
AcuI	CTGAAG	1 cut(s)	231
AflII	CTTAAG	1 cut(s)	728
AgsI	TTSAA	3 cut(s)	249, 590, 818
AjnI	CCWGG	1 cut(s)	80
AleI	CACNNNNGTG	1 cut(s)	136
AluBI	AGCT	6 cut(s)	126, 159, 236, 301, 583, 610
AluI	AGCT	6 cut(s)	126, 159, 236, 301, 583, 610
Alw21I	GWGCWC	2 cut(s)	585, 597
AlwI	GGATC	2 cut(s)	393, 458
AoxI	GGCC	3 cut(s)	140, 563, 601
ApeKI	GCWGC	6 cut(s)	101, 236, 476, 479, 492, 552
ApoI	RAATTY	2 cut(s)	190, 747
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
AseI	ATTAAT	1 cut(s)	504
AspLEI	GCGC	1 cut(s)	279
AspS9I	GGNCC	2 cut(s)	65, 667
AsuHPI	GGTGA	1 cut(s)	695
AvaII	GGWCC	2 cut(s)	65, 667
BanI	GGYRCC	1 cut(s)	766
BanII	GRGCYC	2 cut(s)	88, 585
BbsI	GAAGAC	2 cut(s)	111, 234
Bbv12I	GWGCWC	2 cut(s)	585, 597
BbvI	GCAGC	6 cut(s)	88, 223, 463, 466, 504, 539
BccI	CCATC	3 cut(s)	334, 461, 674
BceAI	ACGGC	1 cut(s)	222
BciT130I	CCWGG	1 cut(s)	82
BfrI	CTTAAG	1 cut(s)	728
BfuAI	ACCTGC	1 cut(s)	510
BisI	GCNGC	7 cut(s)	102, 237, 351, 477, 480, 493, 553
BlsI	GCNGC	7 cut(s)	103, 238, 352, 478, 481, 494, 554
Bme1390I	CCNGG	1 cut(s)	82
Bme18I	GGWCC	2 cut(s)	65, 667
BmgT120I	GGNCC	2 cut(s)	65, 667
BmiI	GGNNCC	4 cut(s)	87, 185, 429, 768
BmrFI	CCNGG	1 cut(s)	82
BmsI	GCATC	2 cut(s)	551, 764
BpiI	GAAGAC	2 cut(s)	111, 234
BpmI	CTGGAG	1 cut(s)	139
Bpu10I	CCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	2 cut(s)	54, 701
Bsa29I	ATCGAT	1 cut(s)	372
BsaJI	CCNNGG	2 cut(s)	81, 137
BsaXI	ACNNNNNCTCC	2 cut(s)	70, 100
Bse1I	ACTGG	1 cut(s)	172
Bse3DI	GCAATG	2 cut(s)	118, 408
BseBI	CCWGG	1 cut(s)	82
BseCI	ATCGAT	1 cut(s)	372
BseDI	CCNNGG	2 cut(s)	81, 137
BseGI	GGATG	1 cut(s)	448
BseMI	GCAATG	2 cut(s)	118, 408
BseMII	CTCAG	2 cut(s)	98, 485
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	1 cut(s)	135
BseXI	GCAGC	6 cut(s)	88, 223, 463, 466, 504, 539
BsgI	GTGCAG	2 cut(s)	87, 544
BshFI	GGCC	3 cut(s)	142, 565, 603
BshNI	GGYRCC	1 cut(s)	766
BshVI	ATCGAT	1 cut(s)	372
BsiHKAI	GWGCWC	2 cut(s)	585, 597
BsiSI	CCGG	1 cut(s)	489
BsnI	GGCC	3 cut(s)	142, 565, 603
Bsp1286I	GDGCHC	3 cut(s)	88, 585, 597
Bsp143I	GATC	4 cut(s)	369, 373, 385, 463
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	3 cut(s)	142, 565, 603
BspCNI	CTCAG	2 cut(s)	99, 484
BspDI	ATCGAT	1 cut(s)	372
BspLI	GGNNCC	4 cut(s)	87, 185, 429, 768
BspMI	ACCTGC	1 cut(s)	510
BspPI	GGATC	2 cut(s)	393, 458
BspT107I	GGYRCC	1 cut(s)	766
BspTI	CTTAAG	1 cut(s)	728
BsrDI	GCAATG	2 cut(s)	118, 408
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	2 cut(s)	81, 137
BssMI	GATC	4 cut(s)	369, 373, 385, 463
Bst2UI	CCWGG	1 cut(s)	82
Bst4CI	ACNGT	2 cut(s)	573, 776
BstAFI	CTTAAG	1 cut(s)	728
BstAPI	GCANNNNNTGC	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	303
BstDEI	CTNAG	3 cut(s)	107, 311, 471
BstDSI	CCRYGG	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	448
BstHHI	GCGC	1 cut(s)	279
BstKTI	GATC	4 cut(s)	372, 376, 388, 466
BstMBI	GATC	4 cut(s)	369, 373, 385, 463
BstMWI	GCNNNNNNNGC	7 cut(s)	83, 215, 242, 302, 476, 623, 632
BstNI	CCWGG	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	80
BstV1I	GCAGC	6 cut(s)	88, 223, 463, 466, 504, 539
BstV2I	GAAGAC	2 cut(s)	111, 234
BstX2I	RGATCY	1 cut(s)	385
BstXI	CCANNNNNNTGG	3 cut(s)	138, 179, 195
BstYI	RGATCY	1 cut(s)	385
Bsu15I	ATCGAT	1 cut(s)	372
BsuRI	GGCC	3 cut(s)	142, 565, 603
BsuTUI	ATCGAT	1 cut(s)	372
BtgI	CCRYGG	1 cut(s)	137
BtgZI	GCGATG	1 cut(s)	570
BtsCI	GGATG	1 cut(s)	448
BtsI	GCAGTG	1 cut(s)	624
BtsIMutI	CAGTG	2 cut(s)	104, 624
BveI	ACCTGC	1 cut(s)	510
Cac8I	GCNNGC	1 cut(s)	303
CfoI	GCGC	1 cut(s)	279
Cfr13I	GGNCC	2 cut(s)	65, 667
ClaI	ATCGAT	1 cut(s)	372
CviAII	CATG	4 cut(s)	149, 377, 424, 631
DdeI	CTNAG	3 cut(s)	107, 311, 471
DpnI	GATC	4 cut(s)	371, 375, 387, 465
DpnII	GATC	4 cut(s)	369, 373, 385, 463
Ecl136II	GAGCTC	1 cut(s)	583
Eco147I	AGGCCT	1 cut(s)	603
Eco24I	GRGCYC	2 cut(s)	88, 585
Eco47I	GGWCC	2 cut(s)	65, 667
Eco53kI	GAGCTC	1 cut(s)	583
Eco57I	CTGAAG	1 cut(s)	231
EcoICRI	GAGCTC	1 cut(s)	583
EcoRII	CCWGG	1 cut(s)	80
EcoT38I	GRGCYC	2 cut(s)	88, 585
FaeI	CATG	4 cut(s)	152, 380, 427, 634
FatI	CATG	4 cut(s)	148, 376, 423, 630
Fnu4HI	GCNGC	7 cut(s)	102, 237, 351, 477, 480, 493, 553
FokI	GGATG	1 cut(s)	455
FriOI	GRGCYC	2 cut(s)	88, 585
Fsp4HI	GCNGC	7 cut(s)	102, 237, 351, 477, 480, 493, 553
GlaI	GCGC	1 cut(s)	278
GluI	GCNGC	7 cut(s)	102, 237, 351, 477, 480, 493, 553
GsuI	CTGGAG	1 cut(s)	139
HaeIII	GGCC	3 cut(s)	142, 565, 603
HapII	CCGG	1 cut(s)	489
HhaI	GCGC	1 cut(s)	279
Hin1II	CATG	4 cut(s)	152, 380, 427, 634
Hin6I	GCGC	1 cut(s)	277
HinP1I	GCGC	1 cut(s)	277
HinfI	GANTC	4 cut(s)	116, 288, 458, 651
HpaII	CCGG	1 cut(s)	489
HphI	GGTGA	1 cut(s)	695
Hpy188I	TCNGA	3 cut(s)	334, 463, 580
HpyAV	CCTTC	3 cut(s)	206, 376, 430
HpyCH4III	ACNGT	2 cut(s)	573, 776
HpyCH4V	TGCA	9 cut(s)	104, 203, 239, 296, 305, 482, 525, 705, 755
HpyF10VI	GCNNNNNNNGC	7 cut(s)	83, 215, 242, 302, 476, 623, 632
HpyF3I	CTNAG	3 cut(s)	107, 311, 471
Hsp92II	CATG	4 cut(s)	152, 380, 427, 634
HspAI	GCGC	1 cut(s)	277
Kzo9I	GATC	4 cut(s)	369, 373, 385, 463
LmnI	GCTCC	2 cut(s)	91, 580
Lsp1109I	GCAGC	6 cut(s)	88, 223, 463, 466, 504, 539
LweI	GCATC	2 cut(s)	551, 764
MaeIII	GTNAC	1 cut(s)	723
MalI	GATC	4 cut(s)	371, 375, 387, 465
MboI	GATC	4 cut(s)	369, 373, 385, 463
MboII	GAAGA	5 cut(s)	111, 236, 239, 698, 701
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	3 cut(s)	88, 585, 597
MluCI	AATT	7 cut(s)	49, 167, 190, 321, 747, 780, 826
MlyI	GAGTC	2 cut(s)	125, 452
MmeI	TCCRAC	2 cut(s)	357, 455
MnlI	CCTC	8 cut(s)	78, 153, 156, 163, 680, 688, 786, 792
MseI	TTAA	2 cut(s)	504, 729
MslI	CAYNNNNRTG	2 cut(s)	136, 590
MspCI	CTTAAG	1 cut(s)	728
MspI	CCGG	1 cut(s)	489
MspR9I	CCNGG	1 cut(s)	82
MvaI	CCWGG	1 cut(s)	82
MwoI	GCNNNNNNNGC	7 cut(s)	83, 215, 242, 302, 476, 623, 632
NdeII	GATC	4 cut(s)	369, 373, 385, 463
NlaIII	CATG	4 cut(s)	152, 380, 427, 634
NlaIV	GGNNCC	4 cut(s)	87, 185, 429, 768
NmuCI	GTSAC	1 cut(s)	723
OliI	CACNNNNGTG	1 cut(s)	136
PaqCI	CACCTGC	1 cut(s)	510
PceI	AGGCCT	1 cut(s)	603
PfeI	GAWTC	2 cut(s)	288, 651
PkrI	GCNGC	7 cut(s)	103, 238, 352, 478, 481, 494, 554
PleI	GAGTC	2 cut(s)	124, 452
PpsI	GAGTC	2 cut(s)	124, 452
PshBI	ATTAAT	1 cut(s)	504
Psp124BI	GAGCTC	1 cut(s)	585
Psp6I	CCWGG	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	80
PspN4I	GGNNCC	4 cut(s)	87, 185, 429, 768
PspPI	GGNCC	2 cut(s)	65, 667
PsuI	RGATCY	1 cut(s)	385
RseI	CAYNNNNRTG	2 cut(s)	136, 590
SacI	GAGCTC	1 cut(s)	585
SaqAI	TTAA	2 cut(s)	504, 729
SatI	GCNGC	7 cut(s)	102, 237, 351, 477, 480, 493, 553
Sau3AI	GATC	4 cut(s)	369, 373, 385, 463
Sau96I	GGNCC	2 cut(s)	65, 667
SchI	GAGTC	2 cut(s)	125, 452
ScrFI	CCNGG	1 cut(s)	82
SduI	GDGCHC	3 cut(s)	88, 585, 597
SfaNI	GCATC	2 cut(s)	551, 764
SinI	GGWCC	2 cut(s)	65, 667
SmiMI	CAYNNNNRTG	2 cut(s)	136, 590
SmlI	CTYRAG	3 cut(s)	69, 716, 728
SmoI	CTYRAG	3 cut(s)	69, 716, 728
Sse9I	AATT	7 cut(s)	49, 167, 190, 321, 747, 780, 826
SseBI	AGGCCT	1 cut(s)	603
SsiI	CCGC	1 cut(s)	350
SspI	AATATT	1 cut(s)	502
SstI	GAGCTC	1 cut(s)	585
StuI	AGGCCT	1 cut(s)	603
StyD4I	CCNGG	1 cut(s)	80
TaaI	ACNGT	2 cut(s)	573, 776
TaqI	TCGA	3 cut(s)	372, 456, 778
TasI	AATT	7 cut(s)	49, 167, 190, 321, 747, 780, 826
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	2 cut(s)	288, 651
Tru1I	TTAA	2 cut(s)	504, 729
Tru9I	TTAA	2 cut(s)	504, 729
TscAI	CASTG	2 cut(s)	111, 624
TseFI	GTSAC	1 cut(s)	723
TseI	GCWGC	6 cut(s)	101, 236, 476, 479, 492, 552
Tsp45I	GTSAC	1 cut(s)	723
TspDTI	ATGAA	4 cut(s)	237, 412, 459, 524
TspGWI	ACGGA	1 cut(s)	126
TspRI	CASTG	2 cut(s)	111, 624
Vha464I	CTTAAG	1 cut(s)	728
VpaK11BI	GGWCC	2 cut(s)	65, 667
VspI	ATTAAT	1 cut(s)	504
XapI	RAATTY	2 cut(s)	190, 747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.