Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8359043.1

Orthogroup ID

OG0010198

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 576

Gene Structure 576 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8359043.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

atggagaaatgttattctgctgaagggccaaactgggttaatcagcaccagactgcaacagcagtgagcaatgagtcttcttctttccaagttccatggcctcatgtgagtcatgtttctaagcctactcaattccagttctctggacggtttccaccttcatggtcttcaacggccgaagggattgccgaagaagatagagctgcgagtgcttctaagagccatagccaagccgagaagcggcgcagagacagaatcaatgcgcagcttgcaactcttaggaaactaattccccagtctgacaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

102

Amino Acids

11.41

Weight (kDa)

9.36

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40200
fragaria_vesca	FvH4_7g24720
malus_domestica	MD01G1155000.v1.1 MD07G1224100.v1.1
prunus_persica	Prupe.2G252600_v2.0.a1
pyrus_communis	pycom01g17240 pycom07g20270
rosa_chinensis	RchiOBHm_Chr1g0370561
rosa_laevigata	RLG00000027026
rosa_multiflora	Rmu_co8359043.1_g000001 Rmu_sc0002021.1_g000016 Rmu_sc0013283.1_g000001 Rmu_sc0026468.1_g000001 Rmu_sc0032061.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286420
rosa_rugosa	Rorug01G0357600
rosa_samantha	Rh1AG367000 Rh1BG330500 Rh1CG344800 Rh1DG362000
rosa_wichuraiana	Rw1G032300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	264
AciI	CCGC	1 cut(s)	241
AcoI	YGGCCR	1 cut(s)	174
AcuI	CTGAAG	1 cut(s)	42
AfiI	CCNNNNNNNGG	1 cut(s)	240
AgsI	TTSAA	1 cut(s)	171
AluBI	AGCT	2 cut(s)	203, 268
AluI	AGCT	2 cut(s)	203, 268
Alw26I	GTCTC	1 cut(s)	243
AoxI	GGCC	3 cut(s)	26, 98, 174
ApeKI	GCWGC	2 cut(s)	203, 265
AspLEI	GCGC	2 cut(s)	246, 265
AspS9I	GGNCC	1 cut(s)	26
BbsI	GAAGAC	2 cut(s)	69, 159
BbvI	GCAGC	2 cut(s)	190, 277
BceAI	ACGGC	1 cut(s)	189
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BcoDI	GTCTC	1 cut(s)	243
BisI	GCNGC	3 cut(s)	204, 242, 266
BlsI	GCNGC	3 cut(s)	205, 243, 267
BmgT120I	GGNCC	1 cut(s)	26
BmrI	ACTGGG	2 cut(s)	43, 289
BmuI	ACTGGG	2 cut(s)	43, 289
BpiI	GAAGAC	2 cut(s)	69, 159
BsaJI	CCNNGG	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse1I	ACTGG	3 cut(s)	38, 136, 295
Bse3DI	GCAATG	1 cut(s)	76
BseDI	CCNNGG	1 cut(s)	95
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMI	GCAATG	1 cut(s)	76
BseNI	ACTGG	3 cut(s)	38, 136, 295
BseX3I	CGGCCG	1 cut(s)	174
BseXI	GCAGC	2 cut(s)	190, 277
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	3 cut(s)	28, 100, 176
BsiEI	CGRYCG	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	240
BsmAI	GTCTC	1 cut(s)	243
BsnI	GGCC	3 cut(s)	28, 100, 176
Bsp19I	CCATGG	1 cut(s)	95
BspACI	CCGC	1 cut(s)	241
BspANI	GGCC	3 cut(s)	28, 100, 176
BsrDI	GCAATG	1 cut(s)	76
BsrI	ACTGG	3 cut(s)	38, 136, 295
BssECI	CCNNGG	1 cut(s)	95
BssT1I	CCWWGG	1 cut(s)	95
Bst4CI	ACNGT	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	3 cut(s)	120, 216, 278
BstDSI	CCRYGG	1 cut(s)	95
BstHHI	GCGC	2 cut(s)	246, 265
BstMAI	GTCTC	1 cut(s)	243
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	2 cut(s)	209, 269
BstV1I	GCAGC	2 cut(s)	190, 277
BstV2I	GAAGAC	2 cut(s)	69, 159
BstXI	CCANNNNNNTGG	2 cut(s)	143, 162
BstZI	CGGCCG	1 cut(s)	174
BsuRI	GGCC	3 cut(s)	28, 100, 176
BtgI	CCRYGG	1 cut(s)	95
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	1 cut(s)	69
Cac8I	GCNNGC	1 cut(s)	270
CfoI	GCGC	2 cut(s)	246, 265
Cfr13I	GGNCC	1 cut(s)	26
CviAII	CATG	4 cut(s)	96, 104, 113, 162
CviJI	RGCY	9 cut(s)	28, 100, 124, 176, 203, 222, 228, 233, 268
CviKI_1	RGCY	9 cut(s)	28, 100, 124, 176, 203, 222, 228, 233, 268
DdeI	CTNAG	3 cut(s)	120, 216, 278
EaeI	YGGCCR	1 cut(s)	174
EagI	CGGCCG	1 cut(s)	174
EclXI	CGGCCG	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	95
Eco52I	CGGCCG	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	42
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
FaeI	CATG	4 cut(s)	99, 107, 116, 165
FaiI	YATR	5 cut(s)	97, 105, 114, 163, 225
FatI	CATG	4 cut(s)	95, 103, 112, 161
Fnu4HI	GCNGC	3 cut(s)	204, 242, 266
Fsp4HI	GCNGC	3 cut(s)	204, 242, 266
FspI	TGCGCA	1 cut(s)	264
GlaI	GCGC	2 cut(s)	245, 264
GluI	GCNGC	3 cut(s)	204, 242, 266
HaeIII	GGCC	3 cut(s)	28, 100, 176
HhaI	GCGC	2 cut(s)	246, 265
Hin1II	CATG	4 cut(s)	99, 107, 116, 165
Hin6I	GCGC	2 cut(s)	244, 263
HinP1I	GCGC	2 cut(s)	244, 263
HinfI	GANTC	3 cut(s)	74, 109, 255
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	1 cut(s)	144
HpyAV	CCTTC	3 cut(s)	17, 168, 173
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4V	TGCA	2 cut(s)	56, 272
HpyF10VI	GCNNNNNNNGC	2 cut(s)	209, 269
HpyF3I	CTNAG	3 cut(s)	120, 216, 278
Hsp92II	CATG	4 cut(s)	99, 107, 116, 165
HspAI	GCGC	2 cut(s)	244, 263
LpnPI	CCDG	4 cut(s)	19, 62, 129, 149
Lsp1109I	GCAGC	2 cut(s)	190, 277
MboII	GAAGA	5 cut(s)	69, 72, 159, 203, 206
MluCI	AATT	2 cut(s)	131, 288
MlyI	GAGTC	2 cut(s)	83, 118
MnlI	CCTC	1 cut(s)	111
MseI	TTAA	1 cut(s)	39
MslI	CAYNNNNRTG	1 cut(s)	160
MwoI	GCNNNNNNNGC	2 cut(s)	209, 269
NcoI	CCATGG	1 cut(s)	95
NlaIII	CATG	4 cut(s)	99, 107, 116, 165
NmeAIII	GCCGAG	1 cut(s)	259
NsbI	TGCGCA	1 cut(s)	264
PfeI	GAWTC	1 cut(s)	255
PkrI	GCNGC	3 cut(s)	205, 243, 267
PleI	GAGTC	2 cut(s)	82, 117
PpsI	GAGTC	2 cut(s)	82, 117
PspPI	GGNCC	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	160
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	3 cut(s)	204, 242, 266
Sau96I	GGNCC	1 cut(s)	26
SchI	GAGTC	2 cut(s)	83, 118
SetI	ASST	3 cut(s)	160, 205, 270
SmiMI	CAYNNNNRTG	1 cut(s)	160
Sse9I	AATT	2 cut(s)	131, 288
SsiI	CCGC	1 cut(s)	241
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	1 cut(s)	150
TasI	AATT	2 cut(s)	131, 288
TauI	GCSGC	1 cut(s)	244
TfiI	GAWTC	1 cut(s)	255
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	1 cut(s)	69
TseI	GCWGC	2 cut(s)	203, 265
TspDTI	ATGAA	1 cut(s)	150
TspRI	CASTG	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.