Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0010198

Physical Location & Seq

Genomic Coordinates Forward (+)

30083283 .. 30085440

Gene Structure 2158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1224100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGATTACAACTGTTGTTATGCTGGGACTGGAGGGGTAAGCTGGCCACAGCAGTACAAATCTGGTGCAGCTCCAGCTGCTGCTGCAGTAAGCAATGAGTCTTCTTCCAGCTTTCTGGTTCCACGGCCTCCTCCTCCTCCTCATGTGTCGAGCACTAATCAATTCCAGTTTTGTGGGTTGCCGCCTAACTCGTGGTCTTTGACGGCAGCTGACGGTTTTGAAGACGATAGAGATGCATCTGCTTCGAAGAGCCACAGGCAGGCTGAGAAAAGGCGCAGAGATAGAATCAGTGCACAGCTTGCTACTCTTAGGAAACTCGTTCCCAAGTCCGACAAGATGGACAAAGCGGCTCTATTAGGAAGCGTGATCGATCATGTGAAGGAACTAAAGCGAAAAGCGGTGGAAGTGAGCGAAGCCTTCATAGTTCCAACCGAAGTTGATGAAGTAACAATCGACTGTGATCCTGCTTATGGTGTAACCTCCACCACTACAAGTAGCACTAACATAAACAGGGGCAATTTTCTCATAACGGCATCCGTTTGCTGCGACGACCGGCCGGAACTCTTCTCGGAGCTCGTTCAAATCCTCAAAGGCCTAAAACTGACGGCGGTAAGAGCCGACATGGCAAGCGTCGGAGGCAGAATCAAAAGCGTTTTGGTGCTTTGTTCTAAGGATGGCGAAGAAGCAGTTTGCTTAAGCACTCTCAAGCAGTCCCTCAAGTTGGTTTTGAGTAAACTTGCCGCGTCGCCAACGGCGCCAAACTGTCGAATTCGAAGCAAGAGGCAGAGGTTTTTCTTTCCATTCCAAGACCCAAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

273

Amino Acids

29.5

Weight (kDa)

8.83

Isoelectric Point (pI)

43.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	83 - 130	2.6e-10	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40200
fragaria_vesca	FvH4_7g24720
malus_domestica	MD01G1155000.v1.1 MD07G1224100.v1.1
prunus_persica	Prupe.2G252600_v2.0.a1
pyrus_communis	pycom01g17240 pycom07g20270
rosa_chinensis	RchiOBHm_Chr1g0370561
rosa_laevigata	RLG00000027026
rosa_multiflora	Rmu_co8359043.1_g000001 Rmu_sc0002021.1_g000016 Rmu_sc0013283.1_g000001 Rmu_sc0026468.1_g000001 Rmu_sc0032061.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286420
rosa_rugosa	Rorug01G0357600
rosa_samantha	Rh1AG367000 Rh1BG330500 Rh1CG344800 Rh1DG362000
rosa_wichuraiana	Rw1G032300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	754
AccII	CGCG	1 cut(s)	743
AciI	CCGC	5 cut(s)	182, 347, 398, 608, 741
AclWI	GGATC	1 cut(s)	455
AcoI	YGGCCR	2 cut(s)	44, 554
AcsI	RAATTY	1 cut(s)	768
AcyI	GRCGYC	1 cut(s)	755
AfaI	GTAC	1 cut(s)	56
AfiI	CCNNNNNNNGG	3 cut(s)	259, 470, 721
AflII	CTTAAG	1 cut(s)	694
AgsI	TTSAA	2 cut(s)	221, 581
AluBI	AGCT	7 cut(s)	42, 71, 77, 111, 209, 298, 574
AluI	AGCT	7 cut(s)	42, 71, 77, 111, 209, 298, 574
Alw21I	GWGCWC	3 cut(s)	155, 295, 576
Alw44I	GTGCAC	1 cut(s)	291
AlwI	GGATC	1 cut(s)	455
AlwNI	CAGNNNCTG	1 cut(s)	80
AoxI	GGCC	4 cut(s)	44, 125, 554, 592
ApaLI	GTGCAC	1 cut(s)	291
ApeKI	GCWGC	6 cut(s)	68, 77, 80, 83, 206, 543
ApoI	RAATTY	1 cut(s)	768
AspLEI	GCGC	2 cut(s)	276, 757
AsuII	TTCGAA	2 cut(s)	245, 772
BaeGI	GKGCMC	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	46
BanI	GGYRCC	1 cut(s)	754
BanII	GRGCYC	1 cut(s)	576
BauI	CACGAG	1 cut(s)	190
BbsI	GAAGAC	2 cut(s)	93, 228
Bbv12I	GWGCWC	3 cut(s)	155, 295, 576
BbvI	GCAGC	6 cut(s)	64, 67, 70, 80, 218, 530
BccI	CCATC	2 cut(s)	331, 668
BceAI	ACGGC	5 cut(s)	140, 219, 546, 621, 768
BcgI	CGANNNNNNTGC	4 cut(s)	215, 225, 249, 259
BfmI	CTRYAG	1 cut(s)	84
BfoI	RGCGCY	1 cut(s)	758
BfrI	CTTAAG	1 cut(s)	694
BglI	GCCNNNNNGGC	1 cut(s)	623
BisI	GCNGC	9 cut(s)	69, 78, 81, 84, 182, 207, 348, 544, 741
BlsI	GCNGC	9 cut(s)	70, 79, 82, 85, 183, 208, 349, 545, 742
BmiI	GGNNCC	2 cut(s)	120, 756
BmsI	GCATC	3 cut(s)	223, 245, 542
BpiI	GAAGAC	2 cut(s)	93, 228
BpmI	CTGGAG	2 cut(s)	51, 57
Bpu14I	TTCGAA	2 cut(s)	245, 772
BpuEI	CTTGAG	2 cut(s)	689, 701
Bsa29I	ATCGAT	1 cut(s)	369
BsaHI	GRCGYC	1 cut(s)	755
BsaJI	CCNNGG	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	3 cut(s)	259, 470, 721
Bse118I	RCCGGY	1 cut(s)	552
Bse1I	ACTGG	2 cut(s)	34, 166
Bse3DI	GCAATG	1 cut(s)	100
BseCI	ATCGAT	1 cut(s)	369
BseDI	CCNNGG	1 cut(s)	122
BseGI	GGATG	2 cut(s)	533, 679
BseLI	CCNNNNNNNGG	3 cut(s)	259, 470, 721
BseMI	GCAATG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	2 cut(s)	34, 166
BseRI	GAGGAG	4 cut(s)	120, 123, 126, 129
BseSI	GKGCMC	1 cut(s)	295
BseX3I	CGGCCG	1 cut(s)	554
BseXI	GCAGC	6 cut(s)	64, 67, 70, 80, 218, 530
BseYI	CCCAGC	1 cut(s)	23
BsgI	GTGCAG	1 cut(s)	87
Bsh1236I	CGCG	1 cut(s)	743
Bsh1285I	CGRYCG	2 cut(s)	553, 557
BshFI	GGCC	4 cut(s)	46, 127, 556, 594
BshNI	GGYRCC	1 cut(s)	754
BshVI	ATCGAT	1 cut(s)	369
BsiEI	CGRYCG	2 cut(s)	553, 557
BsiHKAI	GWGCWC	3 cut(s)	155, 295, 576
BsiSI	CCGG	2 cut(s)	553, 557
BslFI	GGGAC	2 cut(s)	40, 697
BslI	CCNNNNNNNGG	3 cut(s)	259, 470, 721
BsmFI	GGGAC	2 cut(s)	40, 697
BsnI	GGCC	4 cut(s)	46, 127, 556, 594
Bsp119I	TTCGAA	2 cut(s)	245, 772
Bsp1286I	GDGCHC	3 cut(s)	155, 295, 576
Bsp143I	GATC	3 cut(s)	366, 370, 460
BspACI	CCGC	5 cut(s)	182, 347, 398, 608, 741
BspANI	GGCC	4 cut(s)	46, 127, 556, 594
BspCNI	CTCAG	1 cut(s)	256
BspDI	ATCGAT	1 cut(s)	369
BspFNI	CGCG	1 cut(s)	743
BspLI	GGNNCC	2 cut(s)	120, 756
BspMAI	CTGCAG	1 cut(s)	88
BspPI	GGATC	1 cut(s)	455
BspQI	GCTCTTC	1 cut(s)	242
BspT104I	TTCGAA	2 cut(s)	245, 772
BspT107I	GGYRCC	1 cut(s)	754
BspTI	CTTAAG	1 cut(s)	694
BsrDI	GCAATG	1 cut(s)	100
BsrFI	RCCGGY	1 cut(s)	552
BsrI	ACTGG	2 cut(s)	34, 166
BssAI	RCCGGY	1 cut(s)	552
BssECI	CCNNGG	1 cut(s)	122
BssMI	GATC	3 cut(s)	366, 370, 460
BssNI	GRCGYC	1 cut(s)	755
BssSI	CACGAG	1 cut(s)	190
Bst2BI	CACGAG	1 cut(s)	190
Bst4CI	ACNGT	4 cut(s)	14, 215, 458, 764
Bst6I	CTCTTC	2 cut(s)	242, 569
BstACI	GRCGYC	1 cut(s)	755
BstAFI	CTTAAG	1 cut(s)	694
BstAPI	GCANNNNNTGC	1 cut(s)	299
BstBI	TTCGAA	2 cut(s)	245, 772
BstC8I	GCNNGC	4 cut(s)	44, 261, 300, 628
BstDEI	CTNAG	3 cut(s)	264, 308, 669
BstDSI	CCRYGG	1 cut(s)	122
BstF5I	GGATG	2 cut(s)	533, 679
BstFNI	CGCG	1 cut(s)	743
BstH2I	RGCGCY	1 cut(s)	758
BstHHI	GCGC	2 cut(s)	276, 757
BstKTI	GATC	3 cut(s)	369, 373, 463
BstMBI	GATC	3 cut(s)	366, 370, 460
BstMCI	CGRYCG	2 cut(s)	553, 557
BstMWI	GCNNNNNNNGC	8 cut(s)	74, 77, 83, 299, 614, 623, 636, 754
BstSFI	CTRYAG	1 cut(s)	84
BstSLI	GKGCMC	1 cut(s)	295
BstUI	CGCG	1 cut(s)	743
BstV1I	GCAGC	6 cut(s)	64, 67, 70, 80, 218, 530
BstV2I	GAAGAC	2 cut(s)	93, 228
BstXI	CCANNNNNNTGG	2 cut(s)	115, 173
BstZI	CGGCCG	1 cut(s)	554
Bsu15I	ATCGAT	1 cut(s)	369
BsuRI	GGCC	4 cut(s)	46, 127, 556, 594
BsuTUI	ATCGAT	1 cut(s)	369
BtgI	CCRYGG	1 cut(s)	122
BtsCI	GGATG	2 cut(s)	533, 679
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	4 cut(s)	44, 261, 300, 628
CaiI	CAGNNNCTG	1 cut(s)	80
CfoI	GCGC	2 cut(s)	276, 757
Cfr10I	RCCGGY	1 cut(s)	552
ClaI	ATCGAT	1 cut(s)	369
CseI	GACGC	2 cut(s)	619, 732
Csp6I	GTAC	1 cut(s)	55
CviAII	CATG	3 cut(s)	143, 374, 622
CviQI	GTAC	1 cut(s)	55
DdeI	CTNAG	3 cut(s)	264, 308, 669
DinI	GGCGCC	1 cut(s)	756
DpnI	GATC	3 cut(s)	368, 372, 462
DpnII	GATC	3 cut(s)	366, 370, 460
EaeI	YGGCCR	2 cut(s)	44, 554
EagI	CGGCCG	1 cut(s)	554
Eam1104I	CTCTTC	2 cut(s)	242, 569
EarI	CTCTTC	2 cut(s)	242, 569
Ecl136II	GAGCTC	1 cut(s)	574
EclXI	CGGCCG	1 cut(s)	554
Eco147I	AGGCCT	1 cut(s)	594
Eco24I	GRGCYC	1 cut(s)	576
Eco52I	CGGCCG	1 cut(s)	554
Eco53kI	GAGCTC	1 cut(s)	574
EcoICRI	GAGCTC	1 cut(s)	574
EcoRI	GAATTC	1 cut(s)	768
EcoT22I	ATGCAT	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	576
EgeI	GGCGCC	1 cut(s)	756
EheI	GGCGCC	1 cut(s)	756
FaeI	CATG	3 cut(s)	146, 377, 625
FaiI	YATR	8 cut(s)	21, 144, 375, 422, 471, 506, 527, 623
FaqI	GGGAC	2 cut(s)	40, 697
FatI	CATG	3 cut(s)	142, 373, 621
Fnu4HI	GCNGC	9 cut(s)	69, 78, 81, 84, 182, 207, 348, 544, 741
FokI	GGATG	2 cut(s)	520, 686
FriOI	GRGCYC	1 cut(s)	576
Fsp4HI	GCNGC	9 cut(s)	69, 78, 81, 84, 182, 207, 348, 544, 741
GlaI	GCGC	2 cut(s)	275, 756
GluI	GCNGC	9 cut(s)	69, 78, 81, 84, 182, 207, 348, 544, 741
GsaI	CCCAGC	1 cut(s)	27
GsuI	CTGGAG	2 cut(s)	51, 57
HaeII	RGCGCY	1 cut(s)	758
HaeIII	GGCC	4 cut(s)	46, 127, 556, 594
HapII	CCGG	2 cut(s)	553, 557
HgaI	GACGC	2 cut(s)	619, 732
HhaI	GCGC	2 cut(s)	276, 757
Hin1I	GRCGYC	1 cut(s)	755
Hin1II	CATG	3 cut(s)	146, 377, 625
Hin6I	GCGC	2 cut(s)	274, 755
HinP1I	GCGC	2 cut(s)	274, 755
HinfI	GANTC	3 cut(s)	98, 285, 642
HpaII	CCGG	2 cut(s)	553, 557
Hpy166II	GTNNAC	2 cut(s)	293, 734
Hpy188I	TCNGA	3 cut(s)	331, 571, 635
Hpy8I	GTNNAC	2 cut(s)	293, 734
Hpy99I	CGWCG	3 cut(s)	551, 635, 748
HpyAV	CCTTC	2 cut(s)	373, 427
HpyCH4III	ACNGT	4 cut(s)	14, 215, 458, 764
HpyCH4V	TGCA	4 cut(s)	68, 86, 236, 293
HpyF10VI	GCNNNNNNNGC	8 cut(s)	74, 77, 83, 299, 614, 623, 636, 754
HpyF3I	CTNAG	3 cut(s)	264, 308, 669
Hsp92I	GRCGYC	1 cut(s)	755
Hsp92II	CATG	3 cut(s)	146, 377, 625
HspAI	GCGC	2 cut(s)	274, 755
KasI	GGCGCC	1 cut(s)	754
Kzo9I	GATC	3 cut(s)	366, 370, 460
LguI	GCTCTTC	1 cut(s)	242
LmnI	GCTCC	2 cut(s)	76, 571
Lsp1109I	GCAGC	6 cut(s)	64, 67, 70, 80, 218, 530
LweI	GCATC	3 cut(s)	223, 245, 542
MaeIII	GTNAC	2 cut(s)	445, 475
MalI	GATC	3 cut(s)	368, 372, 462
MboI	GATC	3 cut(s)	366, 370, 460
MboII	GAAGA	6 cut(s)	93, 96, 233, 259, 556, 692
MhlI	GDGCHC	3 cut(s)	155, 295, 576
MlsI	TGGCCA	1 cut(s)	46
MluCI	AATT	3 cut(s)	161, 517, 768
MluNI	TGGCCA	1 cut(s)	46
Mly113I	GGCGCC	1 cut(s)	755
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	3 cut(s)	354, 452, 613
Mox20I	TGGCCA	1 cut(s)	46
Mph1103I	ATGCAT	1 cut(s)	238
MscI	TGGCCA	1 cut(s)	46
MseI	TTAA	1 cut(s)	695
Msp20I	TGGCCA	1 cut(s)	46
MspA1I	CMGCKG	2 cut(s)	77, 209
MspCI	CTTAAG	1 cut(s)	694
MspI	CCGG	2 cut(s)	553, 557
MvnI	CGCG	1 cut(s)	743
MwoI	GCNNNNNNNGC	8 cut(s)	74, 77, 83, 299, 614, 623, 636, 754
NarI	GGCGCC	1 cut(s)	755
NdeII	GATC	3 cut(s)	366, 370, 460
NlaIII	CATG	3 cut(s)	146, 377, 625
NlaIV	GGNNCC	2 cut(s)	120, 756
NsiI	ATGCAT	1 cut(s)	238
NspV	TTCGAA	2 cut(s)	245, 772
PceI	AGGCCT	1 cut(s)	594
PciSI	GCTCTTC	1 cut(s)	242
PfeI	GAWTC	2 cut(s)	285, 642
PkrI	GCNGC	9 cut(s)	70, 79, 82, 85, 183, 208, 349, 545, 742
PleI	GAGTC	1 cut(s)	106
PluTI	GGCGCC	1 cut(s)	758
PpsI	GAGTC	1 cut(s)	106
Psp124BI	GAGCTC	1 cut(s)	576
PspFI	CCCAGC	1 cut(s)	23
PspN4I	GGNNCC	2 cut(s)	120, 756
PstI	CTGCAG	1 cut(s)	88
PstNI	CAGNNNCTG	1 cut(s)	80
PvuII	CAGCTG	2 cut(s)	77, 209
RsaI	GTAC	1 cut(s)	56
RsaNI	GTAC	1 cut(s)	55
SacI	GAGCTC	1 cut(s)	576
SapI	GCTCTTC	1 cut(s)	242
SaqAI	TTAA	1 cut(s)	695
SatI	GCNGC	9 cut(s)	69, 78, 81, 84, 182, 207, 348, 544, 741
Sau3AI	GATC	3 cut(s)	366, 370, 460
SchI	GAGTC	1 cut(s)	107
SduI	GDGCHC	3 cut(s)	155, 295, 576
SetI	ASST	9 cut(s)	44, 73, 79, 113, 211, 300, 482, 576, 791
SfaNI	GCATC	3 cut(s)	223, 245, 542
SfcI	CTRYAG	1 cut(s)	84
SfoI	GGCGCC	1 cut(s)	756
SfuI	TTCGAA	2 cut(s)	245, 772
SmlI	CTYRAG	3 cut(s)	694, 704, 716
SmoI	CTYRAG	3 cut(s)	694, 704, 716
Sse9I	AATT	3 cut(s)	161, 517, 768
SseBI	AGGCCT	1 cut(s)	594
SsiI	CCGC	5 cut(s)	182, 347, 398, 608, 741
SspDI	GGCGCC	1 cut(s)	754
SstI	GAGCTC	1 cut(s)	576
StuI	AGGCCT	1 cut(s)	594
TaaI	ACNGT	4 cut(s)	14, 215, 458, 764
TaqI	TCGA	6 cut(s)	149, 245, 369, 453, 766, 772
TasI	AATT	3 cut(s)	161, 517, 768
TatI	WGTACW	1 cut(s)	54
TauI	GCSGC	3 cut(s)	184, 350, 743
TfiI	GAWTC	2 cut(s)	285, 642
Tru1I	TTAA	1 cut(s)	695
Tru9I	TTAA	1 cut(s)	695
TscAI	CASTG	1 cut(s)	295
TseI	GCWGC	6 cut(s)	68, 77, 80, 83, 206, 543
TspDTI	ATGAA	2 cut(s)	409, 456
TspGWI	ACGGA	1 cut(s)	526
TspRI	CASTG	1 cut(s)	295
Vha464I	CTTAAG	1 cut(s)	694
VneI	GTGCAC	1 cut(s)	291
XapI	RAATTY	1 cut(s)	768
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.