Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0010198

Physical Location & Seq

Genomic Coordinates Forward (+)

16595687 .. 16597038

Gene Structure 1352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g17240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGATCAGAACTATTATTACGCTGGGACTGGAGTGCCAAGCTGGTCACATCAATACAACTCTGCTGCAGCTGCTGCTGCGATAAGCAATGAGTCTTCTTCCAGCTTTCTGGCTCCATGGCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCATGTATCGAGCTCTAATCAATTCCAGTTTTGTGGGTTGCCGCCTAGTTCGTGGTCTTCGACGGCGGCGGATGGTTTTGAAGAAGATAGAGCTGCATCTGCTTCGAGGAGCCACAGCCAGGCTGAGAAAAGGCGCAGAGATAGAATCAACGCACAGCTTGCTACTCTTAGGAAACTCATTCCCAAGTCCGATAAGATGGACAAGGCGGCTCTATTAGGAAGCGTGATCGATCATGTGAAGGATCTAAAGCGAAAAGCGATGGAAGTGAGCAAATCCTTCGTAGTTCCAACCGAAGTTGATGAAGTAACCATCGACTGTGATCCTGCTCATACTGTAAACTCCGCCACCAGTAGCACTAACAAAAGCCGGGGGAGTTTTCTCATAAGGGCATCCGTCTGCTGCGACGACCGGCCGGAACTCTTCTCGGAGCTCATTCAAGTCCTCAAAGGCCTAAAACTGACGGCTGTTCGTGCCGACATGGCGAGCGTGGGAGGAAGAATCAAAAGTGTTTTGGTGCTTTGTTCTAAGGACGGCGAAGAGGCTGTTTGCACGAGCACTCTCAAACAGTCACTCAAATTGGTTTTGAGTAAACTCGCCGCGTCGTCCATGGCGCCAAACTGTCGGATTCGAAGCAAGAGGCAGAGGTTTTTCTTGCCATTCCATTGCCCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

275

Amino Acids

29.77

Weight (kDa)

9.21

Isoelectric Point (pI)

51.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	86 - 133	1.3e-11	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40200
fragaria_vesca	FvH4_7g24720
malus_domestica	MD01G1155000.v1.1 MD07G1224100.v1.1
prunus_persica	Prupe.2G252600_v2.0.a1
pyrus_communis	pycom01g17240 pycom07g20270
rosa_chinensis	RchiOBHm_Chr1g0370561
rosa_laevigata	RLG00000027026
rosa_multiflora	Rmu_co8359043.1_g000001 Rmu_sc0002021.1_g000016 Rmu_sc0013283.1_g000001 Rmu_sc0026468.1_g000001 Rmu_sc0032061.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286420
rosa_rugosa	Rorug01G0357600
rosa_samantha	Rh1AG367000 Rh1BG330500 Rh1CG344800 Rh1DG362000
rosa_wichuraiana	Rw1G032300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	760
AccII	CGCG	1 cut(s)	749
AciI	CCGC	6 cut(s)	191, 215, 218, 356, 492, 747
AclWI	GGATC	3 cut(s)	12, 399, 464
AcoI	YGGCCR	1 cut(s)	560
AcyI	GRCGYC	1 cut(s)	761
AfiI	CCNNNNNNNGG	1 cut(s)	268
AgsI	TTSAA	2 cut(s)	230, 587
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	7 cut(s)	42, 71, 105, 162, 242, 307, 580
AluI	AGCT	7 cut(s)	42, 71, 105, 162, 242, 307, 580
Alw21I	GWGCWC	3 cut(s)	164, 582, 707
AlwI	GGATC	3 cut(s)	12, 399, 464
AlwNI	CAGNNNCTG	1 cut(s)	74
AoxI	GGCC	3 cut(s)	119, 560, 598
ApeKI	GCWGC	7 cut(s)	65, 68, 71, 74, 77, 242, 549
AspLEI	GCGC	2 cut(s)	285, 763
AsuC2I	CCSGG	1 cut(s)	518
AsuII	TTCGAA	1 cut(s)	778
BanI	GGYRCC	1 cut(s)	760
BanII	GRGCYC	2 cut(s)	164, 582
BauI	CACGAG	1 cut(s)	700
BbsI	GAAGAC	2 cut(s)	87, 198
Bbv12I	GWGCWC	3 cut(s)	164, 582, 707
BbvI	GCAGC	7 cut(s)	52, 58, 61, 64, 80, 229, 536
BccI	CCATC	4 cut(s)	215, 340, 403, 467
BceAI	ACGGC	3 cut(s)	228, 627, 697
BcgI	CGANNNNNNTGC	4 cut(s)	234, 268, 409, 443
BciT130I	CCWGG	1 cut(s)	269
BcnI	CCSGG	1 cut(s)	518
BfaI	CTAG	1 cut(s)	195
BfmI	CTRYAG	1 cut(s)	66
BfoI	RGCGCY	1 cut(s)	764
BglI	GCCNNNNNGGC	1 cut(s)	629
Bme1390I	CCNGG	2 cut(s)	269, 518
BmiI	GGNNCC	3 cut(s)	114, 260, 762
BmrFI	CCNGG	2 cut(s)	269, 518
BmsI	GCATC	2 cut(s)	254, 548
BpiI	GAAGAC	2 cut(s)	87, 198
BpmI	CTGGAG	1 cut(s)	51
Bpu14I	TTCGAA	1 cut(s)	778
BpuMI	CCSGG	1 cut(s)	518
Bsa29I	ATCGAT	1 cut(s)	378
BsaHI	GRCGYC	1 cut(s)	761
BsaJI	CCNNGG	3 cut(s)	116, 517, 756
Bsc4I	CCNNNNNNNGG	1 cut(s)	268
Bse118I	RCCGGY	1 cut(s)	558
Bse1I	ACTGG	3 cut(s)	34, 175, 498
Bse3DI	GCAATG	2 cut(s)	94, 811
BseBI	CCWGG	1 cut(s)	269
BseCI	ATCGAT	1 cut(s)	378
BseDI	CCNNGG	3 cut(s)	116, 517, 756
BseGI	GGATG	2 cut(s)	226, 539
BseLI	CCNNNNNNNGG	1 cut(s)	268
BseMI	GCAATG	2 cut(s)	94, 811
BseMII	CTCAG	1 cut(s)	264
BseNI	ACTGG	3 cut(s)	34, 175, 498
BseX3I	CGGCCG	1 cut(s)	560
BseXI	GCAGC	7 cut(s)	52, 58, 61, 64, 80, 229, 536
BseYI	CCCAGC	1 cut(s)	23
Bsh1236I	CGCG	1 cut(s)	749
Bsh1285I	CGRYCG	2 cut(s)	559, 563
BshFI	GGCC	3 cut(s)	121, 562, 600
BshNI	GGYRCC	1 cut(s)	760
BshVI	ATCGAT	1 cut(s)	378
BsiEI	CGRYCG	2 cut(s)	559, 563
BsiHKAI	GWGCWC	3 cut(s)	164, 582, 707
BsiSI	CCGG	3 cut(s)	517, 559, 563
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	268
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	3 cut(s)	121, 562, 600
Bsp119I	TTCGAA	1 cut(s)	778
Bsp1286I	GDGCHC	3 cut(s)	164, 582, 707
Bsp143I	GATC	5 cut(s)	4, 375, 379, 391, 469
Bsp19I	CCATGG	2 cut(s)	116, 756
BspACI	CCGC	6 cut(s)	191, 215, 218, 356, 492, 747
BspANI	GGCC	3 cut(s)	121, 562, 600
BspCNI	CTCAG	1 cut(s)	265
BspDI	ATCGAT	1 cut(s)	378
BspFNI	CGCG	1 cut(s)	749
BspLI	GGNNCC	3 cut(s)	114, 260, 762
BspMAI	CTGCAG	1 cut(s)	70
BspPI	GGATC	3 cut(s)	12, 399, 464
BspT104I	TTCGAA	1 cut(s)	778
BspT107I	GGYRCC	1 cut(s)	760
BsrDI	GCAATG	2 cut(s)	94, 811
BsrFI	RCCGGY	1 cut(s)	558
BsrI	ACTGG	3 cut(s)	34, 175, 498
BssAI	RCCGGY	1 cut(s)	558
BssECI	CCNNGG	3 cut(s)	116, 517, 756
BssMI	GATC	5 cut(s)	4, 375, 379, 391, 469
BssNI	GRCGYC	1 cut(s)	761
BssSI	CACGAG	1 cut(s)	700
BssT1I	CCWWGG	2 cut(s)	116, 756
Bst2BI	CACGAG	1 cut(s)	700
Bst2UI	CCWGG	1 cut(s)	269
Bst4CI	ACNGT	4 cut(s)	467, 484, 717, 770
Bst6I	CTCTTC	2 cut(s)	575, 681
BstACI	GRCGYC	1 cut(s)	761
BstAPI	GCANNNNNTGC	2 cut(s)	74, 308
BstBI	TTCGAA	1 cut(s)	778
BstC8I	GCNNGC	2 cut(s)	309, 634
BstDEI	CTNAG	3 cut(s)	273, 317, 675
BstDSI	CCRYGG	2 cut(s)	116, 756
BstF5I	GGATG	2 cut(s)	226, 539
BstFNI	CGCG	1 cut(s)	749
BstH2I	RGCGCY	1 cut(s)	764
BstHHI	GCGC	2 cut(s)	285, 763
BstKTI	GATC	5 cut(s)	7, 378, 382, 394, 472
BstMBI	GATC	5 cut(s)	4, 375, 379, 391, 469
BstMCI	CGRYCG	2 cut(s)	559, 563
BstMWI	GCNNNNNNNGC	7 cut(s)	71, 74, 77, 248, 308, 620, 629
BstNI	CCWGG	1 cut(s)	269
BstSCI	CCNGG	2 cut(s)	267, 516
BstSFI	CTRYAG	1 cut(s)	66
BstUI	CGCG	1 cut(s)	749
BstV1I	GCAGC	7 cut(s)	52, 58, 61, 64, 80, 229, 536
BstV2I	GAAGAC	2 cut(s)	87, 198
BstX2I	RGATCY	1 cut(s)	391
BstXI	CCANNNNNNTGG	2 cut(s)	109, 182
BstYI	RGATCY	1 cut(s)	391
BstZI	CGGCCG	1 cut(s)	560
Bsu15I	ATCGAT	1 cut(s)	378
BsuRI	GGCC	3 cut(s)	121, 562, 600
BsuTUI	ATCGAT	1 cut(s)	378
BtgI	CCRYGG	2 cut(s)	116, 756
BtgZI	GCGATG	1 cut(s)	422
BtsCI	GGATG	2 cut(s)	226, 539
Cac8I	GCNNGC	2 cut(s)	309, 634
CaiI	CAGNNNCTG	1 cut(s)	74
CfoI	GCGC	2 cut(s)	285, 763
Cfr10I	RCCGGY	1 cut(s)	558
ClaI	ATCGAT	1 cut(s)	378
CseI	GACGC	1 cut(s)	738
CviAII	CATG	5 cut(s)	117, 152, 383, 628, 757
DdeI	CTNAG	3 cut(s)	273, 317, 675
DinI	GGCGCC	1 cut(s)	762
DpnI	GATC	5 cut(s)	6, 377, 381, 393, 471
DpnII	GATC	5 cut(s)	4, 375, 379, 391, 469
EaeI	YGGCCR	1 cut(s)	560
EagI	CGGCCG	1 cut(s)	560
Eam1104I	CTCTTC	2 cut(s)	575, 681
EarI	CTCTTC	2 cut(s)	575, 681
EciI	GGCGGA	2 cut(s)	233, 481
Ecl136II	GAGCTC	2 cut(s)	162, 580
EclXI	CGGCCG	1 cut(s)	560
Eco130I	CCWWGG	2 cut(s)	116, 756
Eco147I	AGGCCT	1 cut(s)	600
Eco24I	GRGCYC	2 cut(s)	164, 582
Eco52I	CGGCCG	1 cut(s)	560
Eco53kI	GAGCTC	2 cut(s)	162, 580
EcoICRI	GAGCTC	2 cut(s)	162, 580
EcoRII	CCWGG	1 cut(s)	267
EcoT14I	CCWWGG	2 cut(s)	116, 756
EcoT38I	GRGCYC	2 cut(s)	164, 582
EgeI	GGCGCC	1 cut(s)	762
EheI	GGCGCC	1 cut(s)	762
ErhI	CCWWGG	2 cut(s)	116, 756
FaeI	CATG	5 cut(s)	120, 155, 386, 631, 760
FaiI	YATR	7 cut(s)	118, 153, 384, 480, 533, 629, 758
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	5 cut(s)	116, 151, 382, 627, 756
FokI	GGATG	2 cut(s)	233, 526
FriOI	GRGCYC	2 cut(s)	164, 582
FspBI	CTAG	1 cut(s)	195
GlaI	GCGC	2 cut(s)	284, 762
GsaI	CCCAGC	1 cut(s)	27
GsuI	CTGGAG	1 cut(s)	51
HaeII	RGCGCY	1 cut(s)	764
HaeIII	GGCC	3 cut(s)	121, 562, 600
HapII	CCGG	3 cut(s)	517, 559, 563
HgaI	GACGC	1 cut(s)	738
HhaI	GCGC	2 cut(s)	285, 763
Hin1I	GRCGYC	1 cut(s)	761
Hin1II	CATG	5 cut(s)	120, 155, 386, 631, 760
Hin6I	GCGC	2 cut(s)	283, 761
HinP1I	GCGC	2 cut(s)	283, 761
HinfI	GANTC	4 cut(s)	92, 294, 648, 775
HpaII	CCGG	3 cut(s)	517, 559, 563
Hpy166II	GTNNAC	2 cut(s)	487, 740
Hpy188I	TCNGA	4 cut(s)	9, 340, 577, 774
Hpy8I	GTNNAC	2 cut(s)	487, 740
Hpy99I	CGWCG	3 cut(s)	214, 557, 754
HpyAV	CCTTC	2 cut(s)	382, 436
HpyCH4III	ACNGT	4 cut(s)	467, 484, 717, 770
HpyCH4V	TGCA	3 cut(s)	68, 245, 699
HpyF10VI	GCNNNNNNNGC	7 cut(s)	71, 74, 77, 248, 308, 620, 629
HpyF3I	CTNAG	3 cut(s)	273, 317, 675
Hsp92I	GRCGYC	1 cut(s)	761
Hsp92II	CATG	5 cut(s)	120, 155, 386, 631, 760
HspAI	GCGC	2 cut(s)	283, 761
KasI	GGCGCC	1 cut(s)	760
Kzo9I	GATC	5 cut(s)	4, 375, 379, 391, 469
LmnI	GCTCC	3 cut(s)	118, 258, 577
Lsp1109I	GCAGC	7 cut(s)	52, 58, 61, 64, 80, 229, 536
LweI	GCATC	2 cut(s)	254, 548
MaeI	CTAG	1 cut(s)	195
MaeIII	GTNAC	3 cut(s)	45, 454, 717
MalI	GATC	5 cut(s)	6, 377, 381, 393, 471
MboI	GATC	5 cut(s)	4, 375, 379, 391, 469
MboII	GAAGA	8 cut(s)	87, 90, 198, 242, 245, 562, 657, 698
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	3 cut(s)	164, 582, 707
MluCI	AATT	3 cut(s)	170, 725, 820
Mly113I	GGCGCC	1 cut(s)	761
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	2 cut(s)	461, 752
MseI	TTAA	1 cut(s)	823
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	3 cut(s)	517, 559, 563
MspR9I	CCNGG	2 cut(s)	269, 518
MvaI	CCWGG	1 cut(s)	269
MvnI	CGCG	1 cut(s)	749
MwoI	GCNNNNNNNGC	7 cut(s)	71, 74, 77, 248, 308, 620, 629
NarI	GGCGCC	1 cut(s)	761
NciI	CCSGG	1 cut(s)	518
NcoI	CCATGG	2 cut(s)	116, 756
NdeII	GATC	5 cut(s)	4, 375, 379, 391, 469
NlaIII	CATG	5 cut(s)	120, 155, 386, 631, 760
NlaIV	GGNNCC	3 cut(s)	114, 260, 762
NmuCI	GTSAC	2 cut(s)	45, 717
NspV	TTCGAA	1 cut(s)	778
PceI	AGGCCT	1 cut(s)	600
PcsI	WCGNNNNNNNCGW	1 cut(s)	206
PfeI	GAWTC	3 cut(s)	294, 648, 775
PleI	GAGTC	1 cut(s)	100
PluTI	GGCGCC	1 cut(s)	764
PpsI	GAGTC	1 cut(s)	100
Psp124BI	GAGCTC	2 cut(s)	164, 582
Psp6I	CCWGG	1 cut(s)	267
PspFI	CCCAGC	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	3 cut(s)	114, 260, 762
PsrI	GAACNNNNNNTAC	1 cut(s)	34
PstI	CTGCAG	1 cut(s)	70
PstNI	CAGNNNCTG	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	391
PvuII	CAGCTG	1 cut(s)	71
SacI	GAGCTC	2 cut(s)	164, 582
SaqAI	TTAA	1 cut(s)	823
Sau3AI	GATC	5 cut(s)	4, 375, 379, 391, 469
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	2 cut(s)	269, 518
SduI	GDGCHC	3 cut(s)	164, 582, 707
SetI	ASST	8 cut(s)	44, 73, 107, 164, 244, 309, 582, 797
SfaNI	GCATC	2 cut(s)	254, 548
SfcI	CTRYAG	1 cut(s)	66
SfoI	GGCGCC	1 cut(s)	762
SfuI	TTCGAA	1 cut(s)	778
Sse9I	AATT	3 cut(s)	170, 725, 820
SseBI	AGGCCT	1 cut(s)	600
SsiI	CCGC	6 cut(s)	191, 215, 218, 356, 492, 747
SspDI	GGCGCC	1 cut(s)	760
SspMI	CTAG	1 cut(s)	195
SstI	GAGCTC	2 cut(s)	164, 582
StuI	AGGCCT	1 cut(s)	600
StyD4I	CCNGG	2 cut(s)	267, 516
StyI	CCWWGG	2 cut(s)	116, 756
TaaI	ACNGT	4 cut(s)	467, 484, 717, 770
TaqI	TCGA	6 cut(s)	158, 209, 254, 378, 462, 778
TasI	AATT	3 cut(s)	170, 725, 820
TauI	GCSGC	4 cut(s)	193, 218, 359, 749
TfiI	GAWTC	3 cut(s)	294, 648, 775
Tru1I	TTAA	1 cut(s)	823
Tru9I	TTAA	1 cut(s)	823
TseFI	GTSAC	2 cut(s)	45, 717
TseI	GCWGC	7 cut(s)	65, 68, 71, 74, 77, 242, 549
Tsp45I	GTSAC	2 cut(s)	45, 717
TspDTI	ATGAA	1 cut(s)	465
TspGWI	ACGGA	1 cut(s)	532
XspI	CTAG	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.