Rroxscaffold_4G00286420

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0010198
Physical Location & Seq
Reverse (-)
7460737 .. 7462287
1551 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00286420.1

Sequence Viewer

Length: 795 bp
ATGGAGAAATGTTATTATGCTGAAGGGCCAAACTGGGTTAATCAGCACCAGACTGCAACAGCAGTGAGCAATGAGTCTTCTTCTTTCCAAGTTCCATGGCCTCATGTGAGTCATGTTTCTAAGCCTACTCAATTCCAGTTCTCTGGACGGTTTCCACCTTCATGGTCTTCAACGGCCGAAGGGATTGCCGAAGAAGATAGGGCTGCGAGTGCTTCTAAGAGCCATAGCCAAGCCGAGAAGCGGCGCAGAGACAGAATCAATGCGCAGCTTGCAACTCTTAGGAAACTAATTCCCCAGTCTGACAAGATGGACAAGGCAGCTCTATTGGGAAGTGTGATAGATGAAGTCAAGGATCTTAAGCGAAAAGCTATTGAAGTGAGCAAAGCCTTCATGGTTCCAACTGAATTTGATGACTTGACTGTTAGTCAATGTGATCCTGCCCGTGAGGGTACTCTTATAAACTCCACCAGCATCAACAAAATCAAGGACAATAGTATTATGATAAGGGTATCTGTTTGCTGTGATGACCAGCCAGAGTTGTTCACGGAGCTCATTCAAGTACTCAAACGCCTAAAACTGACTGCAATTAAAGCCGATATTGCCAGTGCCGGCGGCAGGATCAAAAGCATTTTAGTCCTTTGCTCCAAGAACAGCGAAGAGGCCGTCTCCATAAGCACTCTCAAACAAGCTCTTAAGTTGGTCTTAAGTAAAATCGCTGAATCATCCGTAACCCCAAATTGTCGAATTAGAAGCAAGAGGCAGAGGTTCTTCTTGCCCTTCCAATACCCAAAGTAG

Protein Analysis

264

Amino Acids

29.44

Weight (kDa)

9.36

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 73 - 120 1.1e-10 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 458
Acc16I TGCGCA 1 cut(s) 264
AciI CCGC 2 cut(s) 241, 612
AclWI GGATC 3 cut(s) 360, 428, 626
AcoI YGGCCR 1 cut(s) 174
AcsI RAATTY 1 cut(s) 404
AcuI CTGAAG 1 cut(s) 42
AfaI GTAC 2 cut(s) 451, 561
AfiI CCNNNNNNNGG 2 cut(s) 240, 615
AflII CTTAAG 3 cut(s) 356, 692, 703
AgsI TTSAA 3 cut(s) 171, 374, 557
AhdI GACNNNNNGTC 1 cut(s) 423
AluBI AGCT 5 cut(s) 268, 320, 368, 550, 689
AluI AGCT 5 cut(s) 268, 320, 368, 550, 689
Alw21I GWGCWC 1 cut(s) 552
Alw26I GTCTC 2 cut(s) 243, 670
AlwI GGATC 3 cut(s) 360, 428, 626
AoxI GGCC 4 cut(s) 26, 98, 174, 660
ApeKI GCWGC 3 cut(s) 203, 265, 317
ApoI RAATTY 1 cut(s) 404
ArsI GACNNNNNNTTYG 2 cut(s) 648, 680
AspLEI GCGC 2 cut(s) 246, 265
AspS9I GGNCC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 552
BbsI GAAGAC 2 cut(s) 69, 159
Bbv12I GWGCWC 1 cut(s) 552
BbvI GCAGC 3 cut(s) 190, 277, 329
BccI CCATC 1 cut(s) 301
BceAI ACGGC 2 cut(s) 189, 647
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BcoDI GTCTC 2 cut(s) 243, 670
BfrI CTTAAG 3 cut(s) 356, 692, 703
BisI GCNGC 5 cut(s) 204, 242, 266, 318, 613
BlsI GCNGC 5 cut(s) 205, 243, 267, 319, 614
BmcAI AGTACT 1 cut(s) 561
BmeRI GACNNNNNGTC 1 cut(s) 423
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 396
BmrI ACTGGG 2 cut(s) 43, 289
BmsI GCATC 1 cut(s) 480
BmuI ACTGGG 2 cut(s) 43, 289
BpiI GAAGAC 2 cut(s) 69, 159
BplI GAGNNNNNCTC 2 cut(s) 650, 682
BsaJI CCNNGG 1 cut(s) 95
Bsc4I CCNNNNNNNGG 2 cut(s) 240, 615
Bse118I RCCGGY 1 cut(s) 608
Bse1I ACTGG 4 cut(s) 38, 136, 295, 603
Bse3DI GCAATG 1 cut(s) 76
BseDI CCNNGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 722
BseLI CCNNNNNNNGG 2 cut(s) 240, 615
BseMI GCAATG 1 cut(s) 76
BseNI ACTGG 4 cut(s) 38, 136, 295, 603
BseX3I CGGCCG 1 cut(s) 174
BseXI GCAGC 3 cut(s) 190, 277, 329
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 4 cut(s) 28, 100, 176, 662
BsiEI CGRYCG 1 cut(s) 177
BsiHKAI GWGCWC 1 cut(s) 552
BsiSI CCGG 1 cut(s) 609
BslI CCNNNNNNNGG 2 cut(s) 240, 615
BsmAI GTCTC 2 cut(s) 243, 670
BsmBI CGTCTC 1 cut(s) 670
BsnI GGCC 4 cut(s) 28, 100, 176, 662
Bsp1286I GDGCHC 1 cut(s) 552
Bsp143I GATC 3 cut(s) 352, 433, 618
Bsp19I CCATGG 1 cut(s) 95
BspACI CCGC 2 cut(s) 241, 612
BspANI GGCC 4 cut(s) 28, 100, 176, 662
BspLI GGNNCC 1 cut(s) 396
BspPI GGATC 3 cut(s) 360, 428, 626
BspTI CTTAAG 3 cut(s) 356, 692, 703
BsrDI GCAATG 1 cut(s) 76
BsrFI RCCGGY 1 cut(s) 608
BsrI ACTGG 4 cut(s) 38, 136, 295, 603
BssAI RCCGGY 1 cut(s) 608
BssECI CCNNGG 1 cut(s) 95
BssMI GATC 3 cut(s) 352, 433, 618
BssT1I CCWWGG 1 cut(s) 95
Bst4CI ACNGT 2 cut(s) 150, 421
Bst6I CTCTTC 1 cut(s) 651
BstAFI CTTAAG 3 cut(s) 356, 692, 703
BstC8I GCNNGC 2 cut(s) 270, 610
BstDEI CTNAG 3 cut(s) 120, 216, 278
BstDSI CCRYGG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 722
BstHHI GCGC 2 cut(s) 246, 265
BstKTI GATC 3 cut(s) 355, 436, 621
BstMAI GTCTC 2 cut(s) 243, 670
BstMBI GATC 3 cut(s) 352, 433, 618
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 4 cut(s) 209, 269, 590, 599
BstV1I GCAGC 3 cut(s) 190, 277, 329
BstV2I GAAGAC 2 cut(s) 69, 159
BstX2I RGATCY 1 cut(s) 352
BstXI CCANNNNNNTGG 2 cut(s) 143, 162
BstYI RGATCY 1 cut(s) 352
BstZI CGGCCG 1 cut(s) 174
BsuRI GGCC 4 cut(s) 28, 100, 176, 662
BtgI CCRYGG 1 cut(s) 95
BtsCI GGATG 1 cut(s) 722
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 2 cut(s) 69, 610
Cac8I GCNNGC 2 cut(s) 270, 610
CfoI GCGC 2 cut(s) 246, 265
Cfr10I RCCGGY 1 cut(s) 608
Cfr13I GGNCC 1 cut(s) 26
Csp6I GTAC 2 cut(s) 450, 560
CviAII CATG 5 cut(s) 96, 104, 113, 162, 391
CviQI GTAC 2 cut(s) 450, 560
DdeI CTNAG 3 cut(s) 120, 216, 278
DpnI GATC 3 cut(s) 354, 435, 620
DpnII GATC 3 cut(s) 352, 433, 618
DriI GACNNNNNGTC 1 cut(s) 423
EaeI YGGCCR 1 cut(s) 174
EagI CGGCCG 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 651
Eam1105I GACNNNNNGTC 1 cut(s) 423
EarI CTCTTC 1 cut(s) 651
Ecl136II GAGCTC 1 cut(s) 550
EclXI CGGCCG 1 cut(s) 174
Eco130I CCWWGG 1 cut(s) 95
Eco24I GRGCYC 1 cut(s) 552
Eco52I CGGCCG 1 cut(s) 174
Eco53kI GAGCTC 1 cut(s) 550
Eco57I CTGAAG 1 cut(s) 42
EcoICRI GAGCTC 1 cut(s) 550
EcoT14I CCWWGG 1 cut(s) 95
EcoT38I GRGCYC 1 cut(s) 552
ErhI CCWWGG 1 cut(s) 95
Esp3I CGTCTC 1 cut(s) 670
FaeI CATG 5 cut(s) 99, 107, 116, 165, 394
FalI AAGNNNNNCTT 2 cut(s) 686, 718
FatI CATG 5 cut(s) 95, 103, 112, 161, 390
Fnu4HI GCNGC 5 cut(s) 204, 242, 266, 318, 613
FokI GGATG 1 cut(s) 709
FriOI GRGCYC 1 cut(s) 552
Fsp4HI GCNGC 5 cut(s) 204, 242, 266, 318, 613
FspI TGCGCA 1 cut(s) 264
GlaI GCGC 2 cut(s) 245, 264
GluI GCNGC 5 cut(s) 204, 242, 266, 318, 613
HaeIII GGCC 4 cut(s) 28, 100, 176, 662
HapII CCGG 1 cut(s) 609
HhaI GCGC 2 cut(s) 246, 265
Hin1II CATG 5 cut(s) 99, 107, 116, 165, 394
Hin6I GCGC 2 cut(s) 244, 263
HinP1I GCGC 2 cut(s) 244, 263
HinfI GANTC 4 cut(s) 74, 109, 255, 719
HpaII CCGG 1 cut(s) 609
Hpy166II GTNNAC 1 cut(s) 543
Hpy188I TCNGA 1 cut(s) 301
Hpy188III TCNNGA 1 cut(s) 144
Hpy8I GTNNAC 1 cut(s) 543
HpyAV CCTTC 5 cut(s) 17, 168, 173, 397, 787
HpyCH4III ACNGT 2 cut(s) 150, 421
HpyCH4V TGCA 3 cut(s) 56, 272, 584
HpyF10VI GCNNNNNNNGC 4 cut(s) 209, 269, 590, 599
HpyF3I CTNAG 3 cut(s) 120, 216, 278
Hsp92II CATG 5 cut(s) 99, 107, 116, 165, 394
HspAI GCGC 2 cut(s) 244, 263
KroI GCCGGC 1 cut(s) 608
KroNI GCCGGC 1 cut(s) 610
Kzo9I GATC 3 cut(s) 352, 433, 618
LmnI GCTCC 2 cut(s) 547, 647
Lsp1109I GCAGC 3 cut(s) 190, 277, 329
LweI GCATC 1 cut(s) 480
MaeIII GTNAC 1 cut(s) 727
MalI GATC 3 cut(s) 354, 435, 620
MboI GATC 3 cut(s) 352, 433, 618
MboII GAAGA 7 cut(s) 69, 72, 159, 203, 206, 668, 760
MflI RGATCY 1 cut(s) 352
MhlI GDGCHC 1 cut(s) 552
MluCI AATT 6 cut(s) 131, 288, 404, 585, 736, 744
MlyI GAGTC 2 cut(s) 83, 118
MmeI TCCRAC 1 cut(s) 422
MnlI CCTC 5 cut(s) 111, 439, 652, 750, 756
MroNI GCCGGC 1 cut(s) 608
MseI TTAA 5 cut(s) 39, 357, 588, 693, 704
MslI CAYNNNNRTG 1 cut(s) 160
MspCI CTTAAG 3 cut(s) 356, 692, 703
MspI CCGG 1 cut(s) 609
MwoI GCNNNNNNNGC 4 cut(s) 209, 269, 590, 599
NaeI GCCGGC 1 cut(s) 610
NcoI CCATGG 1 cut(s) 95
NdeII GATC 3 cut(s) 352, 433, 618
NgoMIV GCCGGC 1 cut(s) 608
NlaIII CATG 5 cut(s) 99, 107, 116, 165, 394
NlaIV GGNNCC 1 cut(s) 396
NmeAIII GCCGAG 1 cut(s) 259
NsbI TGCGCA 1 cut(s) 264
PdiI GCCGGC 1 cut(s) 610
PfeI GAWTC 2 cut(s) 255, 719
PkrI GCNGC 5 cut(s) 205, 243, 267, 319, 614
PleI GAGTC 2 cut(s) 82, 117
PpsI GAGTC 2 cut(s) 82, 117
PsiI TTATAA 1 cut(s) 458
Psp124BI GAGCTC 1 cut(s) 552
PspN4I GGNNCC 1 cut(s) 396
PspPI GGNCC 1 cut(s) 26
PsuI RGATCY 1 cut(s) 352
RsaI GTAC 2 cut(s) 451, 561
RsaNI GTAC 2 cut(s) 450, 560
RseI CAYNNNNRTG 1 cut(s) 160
SacI GAGCTC 1 cut(s) 552
SaqAI TTAA 5 cut(s) 39, 357, 588, 693, 704
SatI GCNGC 5 cut(s) 204, 242, 266, 318, 613
Sau3AI GATC 3 cut(s) 352, 433, 618
Sau96I GGNCC 1 cut(s) 26
ScaI AGTACT 1 cut(s) 561
SchI GAGTC 2 cut(s) 83, 118
SduI GDGCHC 1 cut(s) 552
SetI ASST 7 cut(s) 160, 270, 322, 370, 552, 691, 767
SfaNI GCATC 1 cut(s) 480
SmiMI CAYNNNNRTG 1 cut(s) 160
SmlI CTYRAG 3 cut(s) 356, 692, 703
SmoI CTYRAG 3 cut(s) 356, 692, 703
Sse9I AATT 6 cut(s) 131, 288, 404, 585, 736, 744
SsiI CCGC 2 cut(s) 241, 612
SstI GAGCTC 1 cut(s) 552
StyI CCWWGG 1 cut(s) 95
TaaI ACNGT 2 cut(s) 150, 421
TaqI TCGA 1 cut(s) 742
TasI AATT 6 cut(s) 131, 288, 404, 585, 736, 744
TatI WGTACW 1 cut(s) 559
TauI GCSGC 2 cut(s) 244, 615
TfiI GAWTC 2 cut(s) 255, 719
Tru1I TTAA 5 cut(s) 39, 357, 588, 693, 704
Tru9I TTAA 5 cut(s) 39, 357, 588, 693, 704
TscAI CASTG 2 cut(s) 69, 610
TseI GCWGC 3 cut(s) 203, 265, 317
TspDTI ATGAA 3 cut(s) 150, 357, 379
TspGWI ACGGA 2 cut(s) 560, 715
TspRI CASTG 2 cut(s) 69, 610
Vha464I CTTAAG 3 cut(s) 356, 692, 703
XapI RAATTY 1 cut(s) 404
ZrmI AGTACT 1 cut(s) 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.