Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013283.1

Orthogroup ID

OG0010198

Physical Location & Seq

Genomic Coordinates Reverse (-)

702 .. 1190

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013283.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

atggacaaggcagctctattgggaagtgtgatagatgaagtcaaggatcttaagcgaaaagctattgaagtgagcaaagccttcatggttccaactgaatttgatgacttgactgttagtcaatgtgatcctgcccgtgagggtactcttataaactccaccagcatcaacaaaatcaaggacaatagtattatgataagggtatctgtttgctgtgatgaccagccagagttgttcacggagctcattcaagtactcaaacgcctaaaactgactgcaattaaagccgatattgccagtgccggcggcaggatcaaaagcattttagtcctttgctccaagaacagcgaagaggccgtctccataagcactctcaaacaagctcttaagttggtcttaagtaaaatcgctgaatcatccgtaaccccaaattgtcgaattagaagcaagaggcagaggttcttcttgcccttccaatacccaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

162

Amino Acids

17.97

Weight (kDa)

9.26

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40200
fragaria_vesca	FvH4_7g24720
malus_domestica	MD01G1155000.v1.1 MD07G1224100.v1.1
prunus_persica	Prupe.2G252600_v2.0.a1
pyrus_communis	pycom01g17240 pycom07g20270
rosa_chinensis	RchiOBHm_Chr1g0370561
rosa_laevigata	RLG00000027026
rosa_multiflora	Rmu_co8359043.1_g000001 Rmu_sc0002021.1_g000016 Rmu_sc0013283.1_g000001 Rmu_sc0026468.1_g000001 Rmu_sc0032061.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286420
rosa_rugosa	Rorug01G0357600
rosa_samantha	Rh1AG367000 Rh1BG330500 Rh1CG344800 Rh1DG362000
rosa_wichuraiana	Rw1G032300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	152
AciI	CCGC	1 cut(s)	306
AclWI	GGATC	3 cut(s)	54, 122, 320
AcsI	RAATTY	1 cut(s)	98
AfaI	GTAC	2 cut(s)	145, 255
AfiI	CCNNNNNNNGG	1 cut(s)	309
AflII	CTTAAG	3 cut(s)	50, 386, 397
AgsI	TTSAA	2 cut(s)	68, 251
AhdI	GACNNNNNGTC	1 cut(s)	117
AluBI	AGCT	4 cut(s)	14, 62, 244, 383
AluI	AGCT	4 cut(s)	14, 62, 244, 383
Alw21I	GWGCWC	1 cut(s)	246
Alw26I	GTCTC	1 cut(s)	364
AlwI	GGATC	3 cut(s)	54, 122, 320
AoxI	GGCC	1 cut(s)	354
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	98
ArsI	GACNNNNNNTTYG	2 cut(s)	342, 374
BanII	GRGCYC	1 cut(s)	246
Bbv12I	GWGCWC	1 cut(s)	246
BbvI	GCAGC	1 cut(s)	23
BceAI	ACGGC	1 cut(s)	341
BcoDI	GTCTC	1 cut(s)	364
BfrI	CTTAAG	3 cut(s)	50, 386, 397
BisI	GCNGC	2 cut(s)	12, 307
BlsI	GCNGC	2 cut(s)	13, 308
BmcAI	AGTACT	1 cut(s)	255
BmeRI	GACNNNNNGTC	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	90
BmsI	GCATC	1 cut(s)	174
BplI	GAGNNNNNCTC	2 cut(s)	344, 376
Bsc4I	CCNNNNNNNGG	1 cut(s)	309
Bse118I	RCCGGY	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	416
BseLI	CCNNNNNNNGG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	297
BseXI	GCAGC	1 cut(s)	23
BshFI	GGCC	1 cut(s)	356
BsiHKAI	GWGCWC	1 cut(s)	246
BsiSI	CCGG	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	309
BsmAI	GTCTC	1 cut(s)	364
BsmBI	CGTCTC	1 cut(s)	364
BsnI	GGCC	1 cut(s)	356
Bsp1286I	GDGCHC	1 cut(s)	246
Bsp143I	GATC	3 cut(s)	46, 127, 312
BspACI	CCGC	1 cut(s)	306
BspANI	GGCC	1 cut(s)	356
BspLI	GGNNCC	1 cut(s)	90
BspPI	GGATC	3 cut(s)	54, 122, 320
BspTI	CTTAAG	3 cut(s)	50, 386, 397
BsrFI	RCCGGY	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	297
BssAI	RCCGGY	1 cut(s)	302
BssMI	GATC	3 cut(s)	46, 127, 312
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	345
BstAFI	CTTAAG	3 cut(s)	50, 386, 397
BstC8I	GCNNGC	1 cut(s)	304
BstF5I	GGATG	1 cut(s)	416
BstKTI	GATC	3 cut(s)	49, 130, 315
BstMAI	GTCTC	1 cut(s)	364
BstMBI	GATC	3 cut(s)	46, 127, 312
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 293
BstV1I	GCAGC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	46
BstYI	RGATCY	1 cut(s)	46
BsuRI	GGCC	1 cut(s)	356
BtsCI	GGATG	1 cut(s)	416
BtsIMutI	CAGTG	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	304
Cfr10I	RCCGGY	1 cut(s)	302
Csp6I	GTAC	2 cut(s)	144, 254
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	8 cut(s)	14, 62, 80, 226, 244, 287, 356, 383
CviKI_1	RGCY	8 cut(s)	14, 62, 80, 226, 244, 287, 356, 383
CviQI	GTAC	2 cut(s)	144, 254
DpnI	GATC	3 cut(s)	48, 129, 314
DpnII	GATC	3 cut(s)	46, 127, 312
DriI	GACNNNNNGTC	1 cut(s)	117
Eam1104I	CTCTTC	1 cut(s)	345
Eam1105I	GACNNNNNGTC	1 cut(s)	117
EarI	CTCTTC	1 cut(s)	345
Ecl136II	GAGCTC	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	246
Eco53kI	GAGCTC	1 cut(s)	244
EcoICRI	GAGCTC	1 cut(s)	244
EcoT38I	GRGCYC	1 cut(s)	246
Esp3I	CGTCTC	1 cut(s)	364
FaeI	CATG	1 cut(s)	88
FaiI	YATR	4 cut(s)	86, 152, 194, 365
FalI	AAGNNNNNCTT	2 cut(s)	380, 412
FatI	CATG	1 cut(s)	84
Fnu4HI	GCNGC	2 cut(s)	12, 307
FokI	GGATG	1 cut(s)	403
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	2 cut(s)	12, 307
GluI	GCNGC	2 cut(s)	12, 307
HaeIII	GGCC	1 cut(s)	356
HapII	CCGG	1 cut(s)	303
Hin1II	CATG	1 cut(s)	88
HinfI	GANTC	1 cut(s)	413
HpaII	CCGG	1 cut(s)	303
Hpy166II	GTNNAC	1 cut(s)	237
Hpy8I	GTNNAC	1 cut(s)	237
HpyAV	CCTTC	2 cut(s)	91, 481
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 293
Hsp92II	CATG	1 cut(s)	88
KroI	GCCGGC	1 cut(s)	302
KroNI	GCCGGC	1 cut(s)	304
Kzo9I	GATC	3 cut(s)	46, 127, 312
LmnI	GCTCC	2 cut(s)	241, 341
LpnPI	CCDG	7 cut(s)	144, 175, 236, 240, 295, 310, 316
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	3 cut(s)	48, 129, 314
MboI	GATC	3 cut(s)	46, 127, 312
MboII	GAAGA	2 cut(s)	362, 454
MflI	RGATCY	1 cut(s)	46
MhlI	GDGCHC	1 cut(s)	246
MluCI	AATT	4 cut(s)	98, 279, 430, 438
MmeI	TCCRAC	1 cut(s)	116
MnlI	CCTC	4 cut(s)	133, 346, 444, 450
MroNI	GCCGGC	1 cut(s)	302
MseI	TTAA	4 cut(s)	51, 282, 387, 398
MspCI	CTTAAG	3 cut(s)	50, 386, 397
MspI	CCGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	2 cut(s)	284, 293
NaeI	GCCGGC	1 cut(s)	304
NdeII	GATC	3 cut(s)	46, 127, 312
NgoMIV	GCCGGC	1 cut(s)	302
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	1 cut(s)	90
PdiI	GCCGGC	1 cut(s)	304
PfeI	GAWTC	1 cut(s)	413
PkrI	GCNGC	2 cut(s)	13, 308
PsiI	TTATAA	1 cut(s)	152
Psp124BI	GAGCTC	1 cut(s)	246
PspN4I	GGNNCC	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	46
RsaI	GTAC	2 cut(s)	145, 255
RsaNI	GTAC	2 cut(s)	144, 254
SacI	GAGCTC	1 cut(s)	246
SaqAI	TTAA	4 cut(s)	51, 282, 387, 398
SatI	GCNGC	2 cut(s)	12, 307
Sau3AI	GATC	3 cut(s)	46, 127, 312
ScaI	AGTACT	1 cut(s)	255
SduI	GDGCHC	1 cut(s)	246
SetI	ASST	5 cut(s)	16, 64, 246, 385, 461
SfaNI	GCATC	1 cut(s)	174
SmlI	CTYRAG	3 cut(s)	50, 386, 397
SmoI	CTYRAG	3 cut(s)	50, 386, 397
Sse9I	AATT	4 cut(s)	98, 279, 430, 438
SsiI	CCGC	1 cut(s)	306
SstI	GAGCTC	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	115
TaqI	TCGA	1 cut(s)	436
TasI	AATT	4 cut(s)	98, 279, 430, 438
TatI	WGTACW	1 cut(s)	253
TauI	GCSGC	1 cut(s)	309
TfiI	GAWTC	1 cut(s)	413
Tru1I	TTAA	4 cut(s)	51, 282, 387, 398
Tru9I	TTAA	4 cut(s)	51, 282, 387, 398
TscAI	CASTG	1 cut(s)	304
TseI	GCWGC	1 cut(s)	11
TspDTI	ATGAA	2 cut(s)	51, 73
TspGWI	ACGGA	2 cut(s)	254, 409
TspRI	CASTG	1 cut(s)	304
Vha464I	CTTAAG	3 cut(s)	50, 386, 397
XapI	RAATTY	1 cut(s)	98
ZrmI	AGTACT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.