FvH4_7g24720

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0010198
Physical Location & Seq
Forward (+)
19051126 .. 19052857
1732 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g24720.t1

Sequence Viewer

Length: 786 bp
ATGGAGAATTGTTATTATGCTGAAGGGCCAAACTGGATTAATCAGTACCAGACTGCAGCAGCAGTGAGCAATGAGTCTTCTTCTTTCCAAGTTCCATGGCCTAATGTCTCTAACTCTACTCCATTCCAGTTCTGTGGAGGGTTTCCACCTTCATGGTCTTCAACGGGCGAAGGGCTTGCCGAAGAAGATAGAGCTGCAAGTGCTTCTAAGAGCCATAGCCAAGCTGAGAAGCGTCGCAGAGACAGAATCAATGCGCAGCTTGCAACTCTTAGGAAACTGATTCCCCAGTCTGACAAGATGGACAAGGCAGCTCTGTTGGGAAGTGTGATAGATGAAGTCAAGGATCTGAAGCGAAGAGCAAATGAAGTGAGCAAAGCCTTGATGGTTCCAACTGAATTTGATGATGTAACTGTTAGTCAATGTGATCTTGTTCATGAGGGTACTCCTACAAACTCCACCAGCATTAACAAAAACAAGGACAATAGTATTATGATAAGGGTATCTGTTTGCTGTGATGACCAGCCGGAGTTGTTCAGGGAGCTCATTCAAGTCCTCAAACGCCTAAAACTGACTGCAATGAAAGCCGATATCGCCAGTGCAGGTGGCAGGATCAAAAGCATTTTTGTCCTTTGCTCCAAGGATAGTGAAGAGACCGTCTCCATAAGCAATCTCAAACAAGCCCTTAAGTTGGTGTTGAGTAAAATCGCGGCGTCATCTGCAACGCCAAATTGTCGAATTAGAAGCAAGAGGCAGAGGTTCTTCTTGCCCTTCCAATACCCAAAGTAG

Protein Analysis

262

Amino Acids

28.98

Weight (kDa)

9.04

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 70 - 117 1.1e-10 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 590
Acc16I TGCGCA 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 590
AccII CGCG 1 cut(s) 707
AciI CCGC 1 cut(s) 707
AclWI GGATC 2 cut(s) 351, 617
AcsI RAATTY 1 cut(s) 395
AcuI CTGAAG 2 cut(s) 42, 368
AcyI GRCGYC 1 cut(s) 710
AfaI GTAC 2 cut(s) 47, 442
AfiI CCNNNNNNNGG 1 cut(s) 688
AflII CTTAAG 1 cut(s) 683
AgsI TTSAA 2 cut(s) 162, 548
AluBI AGCT 5 cut(s) 194, 224, 259, 311, 541
AluI AGCT 5 cut(s) 194, 224, 259, 311, 541
Alw21I GWGCWC 1 cut(s) 543
Alw26I GTCTC 4 cut(s) 112, 234, 644, 661
AlwI GGATC 2 cut(s) 351, 617
AoxI GGCC 2 cut(s) 26, 98
ApeKI GCWGC 5 cut(s) 56, 59, 194, 256, 308
ApoI RAATTY 1 cut(s) 395
AseI ATTAAT 1 cut(s) 39
AspLEI GCGC 1 cut(s) 256
AspS9I GGNCC 1 cut(s) 26
BanII GRGCYC 1 cut(s) 543
BbsI GAAGAC 2 cut(s) 69, 150
Bbv12I GWGCWC 1 cut(s) 543
BbvI GCAGC 5 cut(s) 68, 71, 181, 268, 320
BccI CCATC 2 cut(s) 292, 376
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BcoDI GTCTC 4 cut(s) 112, 234, 644, 661
BfmI CTRYAG 1 cut(s) 54
BfrI CTTAAG 1 cut(s) 683
BfuAI ACCTGC 1 cut(s) 590
BisI GCNGC 6 cut(s) 57, 60, 195, 257, 309, 708
BlsI GCNGC 6 cut(s) 58, 61, 196, 258, 310, 709
BmgT120I GGNCC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 387
BmrI ACTGGG 1 cut(s) 280
BmuI ACTGGG 1 cut(s) 280
BpiI GAAGAC 2 cut(s) 69, 150
BplI GAGNNNNNCTC 2 cut(s) 641, 673
BsaHI GRCGYC 1 cut(s) 710
BsaI GGTCTC 1 cut(s) 644
BsaJI CCNNGG 2 cut(s) 95, 636
Bsc4I CCNNNNNNNGG 1 cut(s) 688
Bse1I ACTGG 4 cut(s) 38, 127, 286, 594
Bse3DI GCAATG 2 cut(s) 76, 582
BseDI CCNNGG 2 cut(s) 95, 636
BseLI CCNNNNNNNGG 1 cut(s) 688
BseMI GCAATG 2 cut(s) 76, 582
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 4 cut(s) 38, 127, 286, 594
BseXI GCAGC 5 cut(s) 68, 71, 181, 268, 320
BsgI GTGCAG 1 cut(s) 618
Bsh1236I CGCG 1 cut(s) 707
BshFI GGCC 2 cut(s) 28, 100
BsiHKAI GWGCWC 1 cut(s) 543
BsiSI CCGG 1 cut(s) 524
BslI CCNNNNNNNGG 1 cut(s) 688
BsmAI GTCTC 4 cut(s) 112, 234, 644, 661
BsmBI CGTCTC 1 cut(s) 661
BsnI GGCC 2 cut(s) 28, 100
Bso31I GGTCTC 1 cut(s) 644
Bsp1286I GDGCHC 1 cut(s) 543
Bsp143I GATC 3 cut(s) 343, 424, 609
Bsp19I CCATGG 1 cut(s) 95
BspACI CCGC 1 cut(s) 707
BspANI GGCC 2 cut(s) 28, 100
BspCNI CTCAG 1 cut(s) 217
BspFNI CGCG 1 cut(s) 707
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 1 cut(s) 387
BspMAI CTGCAG 1 cut(s) 58
BspMI ACCTGC 1 cut(s) 590
BspPI GGATC 2 cut(s) 351, 617
BspQI GCTCTTC 1 cut(s) 349
BspTI CTTAAG 1 cut(s) 683
BspTNI GGTCTC 1 cut(s) 644
BsrDI GCAATG 2 cut(s) 76, 582
BsrI ACTGG 4 cut(s) 38, 127, 286, 594
BssECI CCNNGG 2 cut(s) 95, 636
BssMI GATC 3 cut(s) 343, 424, 609
BssNI GRCGYC 1 cut(s) 710
BssT1I CCWWGG 2 cut(s) 95, 636
Bst4CI ACNGT 2 cut(s) 412, 655
Bst6I CTCTTC 2 cut(s) 349, 642
BstACI GRCGYC 1 cut(s) 710
BstAFI CTTAAG 1 cut(s) 683
BstC8I GCNNGC 2 cut(s) 177, 261
BstDEI CTNAG 3 cut(s) 207, 225, 269
BstDSI CCRYGG 1 cut(s) 95
BstFNI CGCG 1 cut(s) 707
BstHHI GCGC 1 cut(s) 256
BstKTI GATC 3 cut(s) 346, 427, 612
BstMAI GTCTC 4 cut(s) 112, 234, 644, 661
BstMBI GATC 3 cut(s) 343, 424, 609
BstMWI GCNNNNNNNGC 5 cut(s) 200, 260, 581, 590, 716
BstSFI CTRYAG 1 cut(s) 54
BstUI CGCG 1 cut(s) 707
BstV1I GCAGC 5 cut(s) 68, 71, 181, 268, 320
BstV2I GAAGAC 2 cut(s) 69, 150
BstX2I RGATCY 1 cut(s) 343
BstXI CCANNNNNNTGG 2 cut(s) 134, 153
BstYI RGATCY 1 cut(s) 343
BsuRI GGCC 2 cut(s) 28, 100
BtgI CCRYGG 1 cut(s) 95
BtsI GCAGTG 1 cut(s) 69
BtsIMutI CAGTG 2 cut(s) 69, 601
BveI ACCTGC 1 cut(s) 590
Cac8I GCNNGC 2 cut(s) 177, 261
CciI TCATGA 1 cut(s) 433
CfoI GCGC 1 cut(s) 256
Cfr13I GGNCC 1 cut(s) 26
CseI GACGC 2 cut(s) 221, 699
Csp6I GTAC 2 cut(s) 46, 441
CviAII CATG 3 cut(s) 96, 153, 434
CviQI GTAC 2 cut(s) 46, 441
DdeI CTNAG 3 cut(s) 207, 225, 269
DpnI GATC 3 cut(s) 345, 426, 611
DpnII GATC 3 cut(s) 343, 424, 609
Eam1104I CTCTTC 2 cut(s) 349, 642
EarI CTCTTC 2 cut(s) 349, 642
Ecl136II GAGCTC 1 cut(s) 541
Eco130I CCWWGG 2 cut(s) 95, 636
Eco24I GRGCYC 1 cut(s) 543
Eco31I GGTCTC 1 cut(s) 644
Eco32I GATATC 1 cut(s) 589
Eco53kI GAGCTC 1 cut(s) 541
Eco57I CTGAAG 2 cut(s) 42, 368
EcoICRI GAGCTC 1 cut(s) 541
EcoRV GATATC 1 cut(s) 589
EcoT14I CCWWGG 2 cut(s) 95, 636
EcoT38I GRGCYC 1 cut(s) 543
ErhI CCWWGG 2 cut(s) 95, 636
Esp3I CGTCTC 1 cut(s) 661
FaeI CATG 3 cut(s) 99, 156, 437
FaiI YATR 7 cut(s) 18, 97, 154, 216, 435, 491, 662
FatI CATG 3 cut(s) 95, 152, 433
Fnu4HI GCNGC 6 cut(s) 57, 60, 195, 257, 309, 708
FriOI GRGCYC 1 cut(s) 543
Fsp4HI GCNGC 6 cut(s) 57, 60, 195, 257, 309, 708
FspI TGCGCA 1 cut(s) 255
GlaI GCGC 1 cut(s) 255
GluI GCNGC 6 cut(s) 57, 60, 195, 257, 309, 708
HaeIII GGCC 2 cut(s) 28, 100
HapII CCGG 1 cut(s) 524
HgaI GACGC 2 cut(s) 221, 699
HhaI GCGC 1 cut(s) 256
Hin1I GRCGYC 1 cut(s) 710
Hin1II CATG 3 cut(s) 99, 156, 437
Hin6I GCGC 1 cut(s) 254
HinP1I GCGC 1 cut(s) 254
HinfI GANTC 3 cut(s) 74, 246, 280
HpaII CCGG 1 cut(s) 524
Hpy188I TCNGA 2 cut(s) 292, 348
Hpy188III TCNNGA 1 cut(s) 434
Hpy99I CGWCG 1 cut(s) 237
HpyAV CCTTC 4 cut(s) 17, 159, 164, 778
HpyCH4III ACNGT 2 cut(s) 412, 655
HpyCH4V TGCA 6 cut(s) 56, 197, 263, 575, 599, 719
HpyF10VI GCNNNNNNNGC 5 cut(s) 200, 260, 581, 590, 716
HpyF3I CTNAG 3 cut(s) 207, 225, 269
Hsp92I GRCGYC 1 cut(s) 710
Hsp92II CATG 3 cut(s) 99, 156, 437
HspAI GCGC 1 cut(s) 254
Kzo9I GATC 3 cut(s) 343, 424, 609
LguI GCTCTTC 1 cut(s) 349
LmnI GCTCC 2 cut(s) 538, 638
Lsp1109I GCAGC 5 cut(s) 68, 71, 181, 268, 320
MaeIII GTNAC 1 cut(s) 406
MalI GATC 3 cut(s) 345, 426, 611
MboI GATC 3 cut(s) 343, 424, 609
MboII GAAGA 8 cut(s) 69, 72, 150, 194, 197, 366, 659, 751
MflI RGATCY 1 cut(s) 343
MhlI GDGCHC 1 cut(s) 543
MluCI AATT 4 cut(s) 7, 395, 727, 735
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 413
MnlI CCTC 5 cut(s) 131, 430, 563, 741, 747
MseI TTAA 3 cut(s) 39, 465, 684
MslI CAYNNNNRTG 1 cut(s) 151
MspCI CTTAAG 1 cut(s) 683
MspI CCGG 1 cut(s) 524
MvnI CGCG 1 cut(s) 707
MwoI GCNNNNNNNGC 5 cut(s) 200, 260, 581, 590, 716
NcoI CCATGG 1 cut(s) 95
NdeII GATC 3 cut(s) 343, 424, 609
NlaIII CATG 3 cut(s) 99, 156, 437
NlaIV GGNNCC 1 cut(s) 387
NsbI TGCGCA 1 cut(s) 255
PagI TCATGA 1 cut(s) 433
PaqCI CACCTGC 1 cut(s) 590
PciSI GCTCTTC 1 cut(s) 349
PfeI GAWTC 2 cut(s) 246, 280
PkrI GCNGC 6 cut(s) 58, 61, 196, 258, 310, 709
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PshBI ATTAAT 1 cut(s) 39
Psp124BI GAGCTC 1 cut(s) 543
PspN4I GGNNCC 1 cut(s) 387
PspPI GGNCC 1 cut(s) 26
PstI CTGCAG 1 cut(s) 58
PsuI RGATCY 1 cut(s) 343
RsaI GTAC 2 cut(s) 47, 442
RsaNI GTAC 2 cut(s) 46, 441
RseI CAYNNNNRTG 1 cut(s) 151
SacI GAGCTC 1 cut(s) 543
SapI GCTCTTC 1 cut(s) 349
SaqAI TTAA 3 cut(s) 39, 465, 684
SatI GCNGC 6 cut(s) 57, 60, 195, 257, 309, 708
Sau3AI GATC 3 cut(s) 343, 424, 609
Sau96I GGNCC 1 cut(s) 26
SchI GAGTC 1 cut(s) 83
SduI GDGCHC 1 cut(s) 543
SetI ASST 8 cut(s) 151, 196, 226, 261, 313, 543, 604, 758
SfcI CTRYAG 1 cut(s) 54
SmiMI CAYNNNNRTG 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 683
SmoI CTYRAG 1 cut(s) 683
Sse9I AATT 4 cut(s) 7, 395, 727, 735
SsiI CCGC 1 cut(s) 707
SstI GAGCTC 1 cut(s) 543
StyI CCWWGG 2 cut(s) 95, 636
TaaI ACNGT 2 cut(s) 412, 655
TaqI TCGA 1 cut(s) 733
TasI AATT 4 cut(s) 7, 395, 727, 735
TauI GCSGC 1 cut(s) 710
TfiI GAWTC 2 cut(s) 246, 280
Tru1I TTAA 3 cut(s) 39, 465, 684
Tru9I TTAA 3 cut(s) 39, 465, 684
TscAI CASTG 2 cut(s) 69, 601
TseI GCWGC 5 cut(s) 56, 59, 194, 256, 308
TspDTI ATGAA 5 cut(s) 141, 348, 378, 422, 593
TspRI CASTG 2 cut(s) 69, 601
Vha464I CTTAAG 1 cut(s) 683
VspI ATTAAT 1 cut(s) 39
XapI RAATTY 1 cut(s) 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.