Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002021.1

Orthogroup ID

OG0010198

Physical Location & Seq

Genomic Coordinates Reverse (-)

66303 .. 67430

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002021.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atggagaaatgttattctgctgaagggccaaactgggttaatcagcaccagactgcaacagcagtgagcaatgagtcttcttctttccaagttccatggcctcatgtgagtcatgtttctaagcctactcaattccagttctctggacggtttccaccttcatggtcttcaacggccgaagggattgccgaagaagatagagctgcgagtgcttctaagagccatagccaagccgagaagcggcgcagagacagaatcaatgcgcagcttgcaactcttaggaaactaattccccagtctgacaagatggacaaggcagctctattgggaagtgtgatagatgaagtcaaggatcttaagcgaaaagctattgaagtgagcaaagccttcatggttccaactgaatttgatgacttgactgttagtcaatgtgatcctgcccgtgagggtactcttataaactccaccagcatcaacaaaatcaaggacaatagtattatgataagggtatctgtttgctgtgatgaccagccggagttgttcacggagctcattcaagtactcaaacgcctaaaactgactgcaattaaagccgatattgccagtgccggcggcaggatcaaaagcattttagtcctttgctccaagaacagcgaagaggccgtctccataagcactctcaaacaagctcttaagttggtcttaagtaaaatcgctgaatcatccgtaaccccaaattgtcgaattagaagcaagaggcagaggttcttcttgcccttccaatacccaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

264

Amino Acids

29.37

Weight (kDa)

9.37

Isoelectric Point (pI)

41.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010198)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40200
fragaria_vesca	FvH4_7g24720
malus_domestica	MD01G1155000.v1.1 MD07G1224100.v1.1
prunus_persica	Prupe.2G252600_v2.0.a1
pyrus_communis	pycom01g17240 pycom07g20270
rosa_chinensis	RchiOBHm_Chr1g0370561
rosa_laevigata	RLG00000027026
rosa_multiflora	Rmu_co8359043.1_g000001 Rmu_sc0002021.1_g000016 Rmu_sc0013283.1_g000001 Rmu_sc0026468.1_g000001 Rmu_sc0032061.1_g000001
rosa_roxburghii	Rroxscaffold_4G00286420
rosa_rugosa	Rorug01G0357600
rosa_samantha	Rh1AG367000 Rh1BG330500 Rh1CG344800 Rh1DG362000
rosa_wichuraiana	Rw1G032300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	458
Acc16I	TGCGCA	1 cut(s)	264
AciI	CCGC	2 cut(s)	241, 612
AclWI	GGATC	3 cut(s)	360, 428, 626
AcoI	YGGCCR	1 cut(s)	174
AcsI	RAATTY	1 cut(s)	404
AcuI	CTGAAG	1 cut(s)	42
AfaI	GTAC	2 cut(s)	451, 561
AfiI	CCNNNNNNNGG	2 cut(s)	240, 615
AflII	CTTAAG	3 cut(s)	356, 692, 703
AgsI	TTSAA	3 cut(s)	171, 374, 557
AhdI	GACNNNNNGTC	1 cut(s)	423
AluBI	AGCT	6 cut(s)	203, 268, 320, 368, 550, 689
AluI	AGCT	6 cut(s)	203, 268, 320, 368, 550, 689
Alw21I	GWGCWC	1 cut(s)	552
Alw26I	GTCTC	2 cut(s)	243, 670
AlwI	GGATC	3 cut(s)	360, 428, 626
AoxI	GGCC	4 cut(s)	26, 98, 174, 660
ApeKI	GCWGC	3 cut(s)	203, 265, 317
ApoI	RAATTY	1 cut(s)	404
ArsI	GACNNNNNNTTYG	2 cut(s)	648, 680
AspLEI	GCGC	2 cut(s)	246, 265
AspS9I	GGNCC	1 cut(s)	26
BanII	GRGCYC	1 cut(s)	552
BbsI	GAAGAC	2 cut(s)	69, 159
Bbv12I	GWGCWC	1 cut(s)	552
BbvI	GCAGC	3 cut(s)	190, 277, 329
BccI	CCATC	1 cut(s)	301
BceAI	ACGGC	2 cut(s)	189, 647
BcgI	CGANNNNNNTGC	2 cut(s)	167, 201
BcoDI	GTCTC	2 cut(s)	243, 670
BfrI	CTTAAG	3 cut(s)	356, 692, 703
BisI	GCNGC	5 cut(s)	204, 242, 266, 318, 613
BlsI	GCNGC	5 cut(s)	205, 243, 267, 319, 614
BmcAI	AGTACT	1 cut(s)	561
BmeRI	GACNNNNNGTC	1 cut(s)	423
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	396
BmrI	ACTGGG	2 cut(s)	43, 289
BmsI	GCATC	1 cut(s)	480
BmuI	ACTGGG	2 cut(s)	43, 289
BpiI	GAAGAC	2 cut(s)	69, 159
BplI	GAGNNNNNCTC	2 cut(s)	650, 682
BsaJI	CCNNGG	1 cut(s)	95
Bsc4I	CCNNNNNNNGG	2 cut(s)	240, 615
Bse118I	RCCGGY	1 cut(s)	608
Bse1I	ACTGG	4 cut(s)	38, 136, 295, 603
Bse3DI	GCAATG	1 cut(s)	76
BseDI	CCNNGG	1 cut(s)	95
BseGI	GGATG	1 cut(s)	722
BseLI	CCNNNNNNNGG	2 cut(s)	240, 615
BseMI	GCAATG	1 cut(s)	76
BseNI	ACTGG	4 cut(s)	38, 136, 295, 603
BseX3I	CGGCCG	1 cut(s)	174
BseXI	GCAGC	3 cut(s)	190, 277, 329
Bsh1285I	CGRYCG	1 cut(s)	177
BshFI	GGCC	4 cut(s)	28, 100, 176, 662
BsiEI	CGRYCG	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	552
BsiSI	CCGG	2 cut(s)	533, 609
BslI	CCNNNNNNNGG	2 cut(s)	240, 615
BsmAI	GTCTC	2 cut(s)	243, 670
BsmBI	CGTCTC	1 cut(s)	670
BsnI	GGCC	4 cut(s)	28, 100, 176, 662
Bsp1286I	GDGCHC	1 cut(s)	552
Bsp143I	GATC	3 cut(s)	352, 433, 618
Bsp19I	CCATGG	1 cut(s)	95
BspACI	CCGC	2 cut(s)	241, 612
BspANI	GGCC	4 cut(s)	28, 100, 176, 662
BspLI	GGNNCC	1 cut(s)	396
BspPI	GGATC	3 cut(s)	360, 428, 626
BspTI	CTTAAG	3 cut(s)	356, 692, 703
BsrDI	GCAATG	1 cut(s)	76
BsrFI	RCCGGY	1 cut(s)	608
BsrI	ACTGG	4 cut(s)	38, 136, 295, 603
BssAI	RCCGGY	1 cut(s)	608
BssECI	CCNNGG	1 cut(s)	95
BssMI	GATC	3 cut(s)	352, 433, 618
BssT1I	CCWWGG	1 cut(s)	95
Bst4CI	ACNGT	2 cut(s)	150, 421
Bst6I	CTCTTC	1 cut(s)	651
BstAFI	CTTAAG	3 cut(s)	356, 692, 703
BstC8I	GCNNGC	2 cut(s)	270, 610
BstDEI	CTNAG	3 cut(s)	120, 216, 278
BstDSI	CCRYGG	1 cut(s)	95
BstF5I	GGATG	1 cut(s)	722
BstHHI	GCGC	2 cut(s)	246, 265
BstKTI	GATC	3 cut(s)	355, 436, 621
BstMAI	GTCTC	2 cut(s)	243, 670
BstMBI	GATC	3 cut(s)	352, 433, 618
BstMCI	CGRYCG	1 cut(s)	177
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 269, 590, 599
BstV1I	GCAGC	3 cut(s)	190, 277, 329
BstV2I	GAAGAC	2 cut(s)	69, 159
BstX2I	RGATCY	1 cut(s)	352
BstXI	CCANNNNNNTGG	2 cut(s)	143, 162
BstYI	RGATCY	1 cut(s)	352
BstZI	CGGCCG	1 cut(s)	174
BsuRI	GGCC	4 cut(s)	28, 100, 176, 662
BtgI	CCRYGG	1 cut(s)	95
BtsCI	GGATG	1 cut(s)	722
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	2 cut(s)	69, 610
Cac8I	GCNNGC	2 cut(s)	270, 610
CfoI	GCGC	2 cut(s)	246, 265
Cfr10I	RCCGGY	1 cut(s)	608
Cfr13I	GGNCC	1 cut(s)	26
Csp6I	GTAC	2 cut(s)	450, 560
CviAII	CATG	5 cut(s)	96, 104, 113, 162, 391
CviQI	GTAC	2 cut(s)	450, 560
DdeI	CTNAG	3 cut(s)	120, 216, 278
DpnI	GATC	3 cut(s)	354, 435, 620
DpnII	GATC	3 cut(s)	352, 433, 618
DriI	GACNNNNNGTC	1 cut(s)	423
EaeI	YGGCCR	1 cut(s)	174
EagI	CGGCCG	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	651
Eam1105I	GACNNNNNGTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	651
Ecl136II	GAGCTC	1 cut(s)	550
EclXI	CGGCCG	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	95
Eco24I	GRGCYC	1 cut(s)	552
Eco52I	CGGCCG	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	550
Eco57I	CTGAAG	1 cut(s)	42
EcoICRI	GAGCTC	1 cut(s)	550
EcoT14I	CCWWGG	1 cut(s)	95
EcoT38I	GRGCYC	1 cut(s)	552
ErhI	CCWWGG	1 cut(s)	95
Esp3I	CGTCTC	1 cut(s)	670
FaeI	CATG	5 cut(s)	99, 107, 116, 165, 394
FaiI	YATR	9 cut(s)	97, 105, 114, 163, 225, 392, 458, 500, 671
FalI	AAGNNNNNCTT	2 cut(s)	686, 718
FatI	CATG	5 cut(s)	95, 103, 112, 161, 390
Fnu4HI	GCNGC	5 cut(s)	204, 242, 266, 318, 613
FokI	GGATG	1 cut(s)	709
FriOI	GRGCYC	1 cut(s)	552
Fsp4HI	GCNGC	5 cut(s)	204, 242, 266, 318, 613
FspI	TGCGCA	1 cut(s)	264
GlaI	GCGC	2 cut(s)	245, 264
GluI	GCNGC	5 cut(s)	204, 242, 266, 318, 613
HaeIII	GGCC	4 cut(s)	28, 100, 176, 662
HapII	CCGG	2 cut(s)	533, 609
HhaI	GCGC	2 cut(s)	246, 265
Hin1II	CATG	5 cut(s)	99, 107, 116, 165, 394
Hin6I	GCGC	2 cut(s)	244, 263
HinP1I	GCGC	2 cut(s)	244, 263
HinfI	GANTC	4 cut(s)	74, 109, 255, 719
HpaII	CCGG	2 cut(s)	533, 609
Hpy166II	GTNNAC	1 cut(s)	543
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	1 cut(s)	144
Hpy8I	GTNNAC	1 cut(s)	543
HpyAV	CCTTC	5 cut(s)	17, 168, 173, 397, 787
HpyCH4III	ACNGT	2 cut(s)	150, 421
HpyCH4V	TGCA	3 cut(s)	56, 272, 584
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 269, 590, 599
HpyF3I	CTNAG	3 cut(s)	120, 216, 278
Hsp92II	CATG	5 cut(s)	99, 107, 116, 165, 394
HspAI	GCGC	2 cut(s)	244, 263
KroI	GCCGGC	1 cut(s)	608
KroNI	GCCGGC	1 cut(s)	610
Kzo9I	GATC	3 cut(s)	352, 433, 618
LmnI	GCTCC	2 cut(s)	547, 647
Lsp1109I	GCAGC	3 cut(s)	190, 277, 329
LweI	GCATC	1 cut(s)	480
MaeIII	GTNAC	1 cut(s)	727
MalI	GATC	3 cut(s)	354, 435, 620
MboI	GATC	3 cut(s)	352, 433, 618
MboII	GAAGA	7 cut(s)	69, 72, 159, 203, 206, 668, 760
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	552
MluCI	AATT	6 cut(s)	131, 288, 404, 585, 736, 744
MlyI	GAGTC	2 cut(s)	83, 118
MmeI	TCCRAC	1 cut(s)	422
MnlI	CCTC	5 cut(s)	111, 439, 652, 750, 756
MroNI	GCCGGC	1 cut(s)	608
MseI	TTAA	5 cut(s)	39, 357, 588, 693, 704
MslI	CAYNNNNRTG	1 cut(s)	160
MspCI	CTTAAG	3 cut(s)	356, 692, 703
MspI	CCGG	2 cut(s)	533, 609
MwoI	GCNNNNNNNGC	4 cut(s)	209, 269, 590, 599
NaeI	GCCGGC	1 cut(s)	610
NcoI	CCATGG	1 cut(s)	95
NdeII	GATC	3 cut(s)	352, 433, 618
NgoMIV	GCCGGC	1 cut(s)	608
NlaIII	CATG	5 cut(s)	99, 107, 116, 165, 394
NlaIV	GGNNCC	1 cut(s)	396
NmeAIII	GCCGAG	1 cut(s)	259
NsbI	TGCGCA	1 cut(s)	264
PdiI	GCCGGC	1 cut(s)	610
PfeI	GAWTC	2 cut(s)	255, 719
PkrI	GCNGC	5 cut(s)	205, 243, 267, 319, 614
PleI	GAGTC	2 cut(s)	82, 117
PpsI	GAGTC	2 cut(s)	82, 117
PsiI	TTATAA	1 cut(s)	458
Psp124BI	GAGCTC	1 cut(s)	552
PspN4I	GGNNCC	1 cut(s)	396
PspPI	GGNCC	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	2 cut(s)	451, 561
RsaNI	GTAC	2 cut(s)	450, 560
RseI	CAYNNNNRTG	1 cut(s)	160
SacI	GAGCTC	1 cut(s)	552
SaqAI	TTAA	5 cut(s)	39, 357, 588, 693, 704
SatI	GCNGC	5 cut(s)	204, 242, 266, 318, 613
Sau3AI	GATC	3 cut(s)	352, 433, 618
Sau96I	GGNCC	1 cut(s)	26
ScaI	AGTACT	1 cut(s)	561
SchI	GAGTC	2 cut(s)	83, 118
SduI	GDGCHC	1 cut(s)	552
SetI	ASST	8 cut(s)	160, 205, 270, 322, 370, 552, 691, 767
SfaNI	GCATC	1 cut(s)	480
SmiMI	CAYNNNNRTG	1 cut(s)	160
SmlI	CTYRAG	3 cut(s)	356, 692, 703
SmoI	CTYRAG	3 cut(s)	356, 692, 703
Sse9I	AATT	6 cut(s)	131, 288, 404, 585, 736, 744
SsiI	CCGC	2 cut(s)	241, 612
SstI	GAGCTC	1 cut(s)	552
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	2 cut(s)	150, 421
TaqI	TCGA	1 cut(s)	742
TasI	AATT	6 cut(s)	131, 288, 404, 585, 736, 744
TatI	WGTACW	1 cut(s)	559
TauI	GCSGC	2 cut(s)	244, 615
TfiI	GAWTC	2 cut(s)	255, 719
Tru1I	TTAA	5 cut(s)	39, 357, 588, 693, 704
Tru9I	TTAA	5 cut(s)	39, 357, 588, 693, 704
TscAI	CASTG	2 cut(s)	69, 610
TseI	GCWGC	3 cut(s)	203, 265, 317
TspDTI	ATGAA	3 cut(s)	150, 357, 379
TspGWI	ACGGA	2 cut(s)	560, 715
TspRI	CASTG	2 cut(s)	69, 610
Vha464I	CTTAAG	3 cut(s)	356, 692, 703
XapI	RAATTY	1 cut(s)	404
ZrmI	AGTACT	1 cut(s)	561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.