AT2G40220

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0014271
Physical Location & Seq
Reverse (-)
16796247 .. 16797585
1339 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G40220.1

Sequence Viewer

Length: 987 bp
ATGGACCCTTTAGCTTCCCAACATCAACACAACCATCTGGAAGATAATAACCAAACCCTAACCCATAATAATCCTCAATCCGATTCCACCACCGACTCATCAACTTCCTCCGCTCAACGCAAACGCAAAGGCAAAGGTGGTCCGGACAACTCCAAGTTCCGTTACCGTGGCGTTCGACAAAGAAGCTGGGGCAAATGGGTCGCCGAGATCCGAGAGCCACGTAAGCGCACTCGCAAGTGGCTTGGTACTTTCGCAACCGCCGAAGACGCCGCACGTGCCTACGACCGGGCTGCCGTTTACCTATACGGGTCACGTGCTCAGCTCAACTTAACCCCTTCGTCTCCTTCCTCCGTCTCTTCCTCTTCCTCCTCCGTCTCCGCCGCTTCTTCTCCTTCCACCTCCTCTTCCTCCACTCAAACCCTAAGACCTCTCCTCCCTCGCCCCGCCGCCGCCACCGTAGGAGGAGGAGCCAACTTTGGTCCGTACGGTATCCCTTTTAACAACAACATCTTCCTTAATGGTGGGACCTCTATGTTATGCCCTAGTTATGGTTTTTTCCCTCAACAACAACAACAACAAAATCAGATGGTCCAGATGGGACAATTCCAACACCAACAGTATCAGAATCTTCATTCTAATACTAACAATAACAAGATTTCTGACATCGAGCTCACTGATGTTCCGGTAACTAATTCGACTTCGTTTCATCATGAGGTGGCGTTAGGGCAGGAACAAGGAGGAAGTGGGTGTAATAATAATAGTTCGATGGAGGATTTGAACTCTCTAGCTGGTTCGGTGGGTTCGAGTCTATCAATAACTCATCCACCGCCGTTGGTTGATCCGGTATGTTCTATGGGTCTGGATCCGGGTTATATGGTTGGAGATGGATCTTCGACCATTTGGCCTTTTGGAGGAGAAGAAGAATATAGTCATAATTGGGGGAGTATTTGGGATTTTATTGATCCCATCTTGGGGGAATTCTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000272 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009755 GO:0009756 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010154 GO:0010182 GO:0010353 GO:0010449 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010896 GO:0016052 GO:0019216 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031930 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0032880 GO:0033993 GO:0034284 GO:0034285 GO:0035266 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044042 GO:0044212 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0050994 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0090207 GO:0090696 GO:0097159 GO:0097305 GO:0097306 GO:0099402 GO:0140110 GO:1901363 GO:1901575 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

328

Amino Acids

35.67

Weight (kDa)

6.19

Isoelectric Point (pI)

50.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 54 - 103 4.3e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40220
fragaria_vesca FvH4_7g24760
malus_domestica MD01G1155400.v1.1 MD07G1224400.v1.1
prunus_persica Prupe.2G253000_v2.0.a1
pyrus_communis pycom01g17270 pycom13g15020
rosa_chinensis RchiOBHm_Chr1g0370631
rosa_laevigata RLG00000027023
rosa_multiflora Rmu_sc0002021.1_g000011
rosa_roxburghii Rroxscaffold_4G00286390
rosa_rugosa Rorug01G0358000
rosa_samantha Rh1AG367500 Rh1BG330800 Rh1CG345000 Rh1DG362300
rosa_wichuraiana Rw1G032340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 113
AccIII TCCGGA 1 cut(s) 142
AciI CCGC 9 cut(s) 111, 258, 270, 378, 381, 444, 447, 450, 827
AclWI GGATC 6 cut(s) 202, 833, 857, 870, 895, 956
AcsI RAATTY 1 cut(s) 977
AcvI CACGTG 2 cut(s) 275, 314
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 2 cut(s) 247, 485
AfiI CCNNNNNNNGG 5 cut(s) 285, 548, 911, 971, 972
AgsI TTSAA 1 cut(s) 778
AluBI AGCT 5 cut(s) 14, 186, 322, 670, 788
AluI AGCT 5 cut(s) 14, 186, 322, 670, 788
Alw21I GWGCWC 2 cut(s) 319, 672
Alw26I GTCTC 3 cut(s) 345, 358, 379
AlwI GGATC 6 cut(s) 202, 833, 857, 870, 895, 956
Aor13HI TCCGGA 1 cut(s) 142
AoxI GGCC 1 cut(s) 902
ApeKI GCWGC 1 cut(s) 290
ApoI RAATTY 1 cut(s) 977
AspLEI GCGC 1 cut(s) 228
AspS9I GGNCC 5 cut(s) 4, 140, 479, 525, 589
AsuC2I CCSGG 2 cut(s) 287, 867
AvaII GGWCC 5 cut(s) 4, 140, 479, 525, 589
BamHI GGATCC 1 cut(s) 862
BanII GRGCYC 1 cut(s) 672
BbrPI CACGTG 2 cut(s) 275, 314
BbsI GAAGAC 1 cut(s) 270
Bbv12I GWGCWC 2 cut(s) 319, 672
BbvI GCAGC 1 cut(s) 277
BccI CCATC 6 cut(s) 42, 580, 589, 760, 878, 974
BceAI ACGGC 2 cut(s) 278, 814
BcgI CGANNNNNNTGC 4 cut(s) 181, 215, 272, 306
BciVI GTATCC 1 cut(s) 500
BcnI CCSGG 2 cut(s) 287, 867
BcoDI GTCTC 3 cut(s) 345, 358, 379
BfaI CTAG 2 cut(s) 543, 785
BfuI GTATCC 1 cut(s) 500
BisI GCNGC 5 cut(s) 270, 291, 381, 447, 450
BlpI GCTNAGC 1 cut(s) 318
BlsI GCNGC 5 cut(s) 271, 292, 382, 448, 451
Bme1390I CCNGG 2 cut(s) 287, 867
Bme18I GGWCC 5 cut(s) 4, 140, 479, 525, 589
BmgT120I GGNCC 5 cut(s) 4, 140, 479, 525, 589
BmiI GGNNCC 4 cut(s) 6, 469, 526, 864
BmrFI CCNGG 2 cut(s) 287, 867
BpiI GAAGAC 1 cut(s) 270
Bpu1102I GCTNAGC 1 cut(s) 318
BpuMI CCSGG 2 cut(s) 287, 867
BsaAI YACGTR 3 cut(s) 221, 275, 314
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 166
BsaWI WCCGGW 3 cut(s) 142, 682, 841
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 5 cut(s) 285, 548, 911, 971, 972
BseAI TCCGGA 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 1 cut(s) 820
BseLI CCNNNNNNNGG 5 cut(s) 285, 548, 911, 971, 972
BseMII CTCAG 1 cut(s) 332
BseRI GAGGAG 6 cut(s) 358, 391, 422, 477, 480, 927
BseXI GCAGC 1 cut(s) 277
BseYI CCCAGC 1 cut(s) 186
Bsh1285I CGRYCG 1 cut(s) 286
BshFI GGCC 1 cut(s) 904
BsiEI CGRYCG 1 cut(s) 286
BsiHKAI GWGCWC 2 cut(s) 319, 672
BsiSI CCGG 5 cut(s) 143, 286, 683, 842, 866
BsiWI CGTACG 1 cut(s) 483
BslFI GGGAC 2 cut(s) 538, 612
BslI CCNNNNNNNGG 5 cut(s) 285, 548, 911, 971, 972
BsmAI GTCTC 3 cut(s) 345, 358, 379
BsmBI CGTCTC 3 cut(s) 345, 358, 379
BsmFI GGGAC 2 cut(s) 538, 612
BsnI GGCC 1 cut(s) 904
Bsp1286I GDGCHC 2 cut(s) 319, 672
Bsp13I TCCGGA 1 cut(s) 142
Bsp143I GATC 5 cut(s) 207, 838, 862, 887, 961
Bsp1720I GCTNAGC 1 cut(s) 318
BspACI CCGC 9 cut(s) 111, 258, 270, 378, 381, 444, 447, 450, 827
BspANI GGCC 1 cut(s) 904
BspCNI CTCAG 1 cut(s) 331
BspEI TCCGGA 1 cut(s) 142
BspHI TCATGA 1 cut(s) 709
BspLI GGNNCC 4 cut(s) 6, 469, 526, 864
BspPI GGATC 6 cut(s) 202, 833, 857, 870, 895, 956
BsrBI CCGCTC 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 166
BssMI GATC 5 cut(s) 207, 838, 862, 887, 961
BssNI GRCGYC 1 cut(s) 267
Bst4CI ACNGT 4 cut(s) 167, 457, 488, 618
Bst6I CTCTTC 3 cut(s) 361, 367, 409
BstACI GRCGYC 1 cut(s) 267
BstBAI YACGTR 3 cut(s) 221, 275, 314
BstDEI CTNAG 2 cut(s) 318, 422
BstDSI CCRYGG 1 cut(s) 166
BstENI CCTNNNNNAGG 1 cut(s) 909
BstF5I GGATG 1 cut(s) 820
BstHHI GCGC 1 cut(s) 228
BstKTI GATC 5 cut(s) 210, 841, 865, 890, 964
BstMAI GTCTC 3 cut(s) 345, 358, 379
BstMBI GATC 5 cut(s) 207, 838, 862, 887, 961
BstMCI CGRYCG 1 cut(s) 286
BstMWI GCNNNNNNNGC 3 cut(s) 223, 266, 275
BstSCI CCNGG 2 cut(s) 285, 865
BstV1I GCAGC 1 cut(s) 277
BstV2I GAAGAC 1 cut(s) 270
BstX2I RGATCY 3 cut(s) 207, 862, 887
BstYI RGATCY 3 cut(s) 207, 862, 887
BsuI GTATCC 1 cut(s) 500
BsuRI GGCC 1 cut(s) 904
BtgI CCRYGG 1 cut(s) 166
BtsCI GGATG 1 cut(s) 820
BtsIMutI CAGTG 1 cut(s) 672
CciI TCATGA 1 cut(s) 709
CfoI GCGC 1 cut(s) 228
Cfr13I GGNCC 5 cut(s) 4, 140, 479, 525, 589
CseI GACGC 1 cut(s) 275
Csp6I GTAC 2 cut(s) 246, 484
CspCI CAANNNNNGTGG 2 cut(s) 813, 848
CviAII CATG 1 cut(s) 710
CviQI GTAC 2 cut(s) 246, 484
DdeI CTNAG 2 cut(s) 318, 422
DpnI GATC 5 cut(s) 209, 840, 864, 889, 963
DpnII GATC 5 cut(s) 207, 838, 862, 887, 961
Eam1104I CTCTTC 3 cut(s) 361, 367, 409
EarI CTCTTC 3 cut(s) 361, 367, 409
EciI GGCGGA 1 cut(s) 367
Ecl136II GAGCTC 1 cut(s) 670
Eco24I GRGCYC 1 cut(s) 672
Eco47I GGWCC 5 cut(s) 4, 140, 479, 525, 589
Eco53kI GAGCTC 1 cut(s) 670
Eco72I CACGTG 2 cut(s) 275, 314
EcoICRI GAGCTC 1 cut(s) 670
EcoNI CCTNNNNNAGG 1 cut(s) 909
EcoO109I RGGNCCY 1 cut(s) 525
EcoRI GAATTC 1 cut(s) 977
EcoT38I GRGCYC 1 cut(s) 672
Esp3I CGTCTC 3 cut(s) 345, 358, 379
FaeI CATG 1 cut(s) 713
FaqI GGGAC 2 cut(s) 538, 612
FatI CATG 1 cut(s) 709
FauI CCCGC 1 cut(s) 451
Fnu4HI GCNGC 5 cut(s) 270, 291, 381, 447, 450
FokI GGATG 1 cut(s) 807
FriOI GRGCYC 1 cut(s) 672
Fsp4HI GCNGC 5 cut(s) 270, 291, 381, 447, 450
FspBI CTAG 2 cut(s) 543, 785
GlaI GCGC 1 cut(s) 227
GluI GCNGC 5 cut(s) 270, 291, 381, 447, 450
GsaI CCCAGC 1 cut(s) 190
HaeIII GGCC 1 cut(s) 904
HapII CCGG 5 cut(s) 143, 286, 683, 842, 866
HgaI GACGC 1 cut(s) 275
HhaI GCGC 1 cut(s) 228
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 1 cut(s) 713
Hin6I GCGC 1 cut(s) 226
HinP1I GCGC 1 cut(s) 226
HinfI GANTC 4 cut(s) 83, 95, 625, 805
HpaII CCGG 5 cut(s) 143, 286, 683, 842, 866
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 5 cut(s) 82, 212, 585, 624, 661
Hpy188III TCNNGA 5 cut(s) 38, 143, 592, 710, 860
Hpy8I GTNNAC 1 cut(s) 298
HpyAV CCTTC 3 cut(s) 345, 354, 402
HpyCH4III ACNGT 4 cut(s) 167, 457, 488, 618
HpyCH4IV ACGT 3 cut(s) 220, 274, 313
HpyF10VI GCNNNNNNNGC 3 cut(s) 223, 266, 275
HpyF3I CTNAG 2 cut(s) 318, 422
HpySE526I ACGT 3 cut(s) 220, 274, 313
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 1 cut(s) 713
HspAI GCGC 1 cut(s) 226
Kpn2I TCCGGA 1 cut(s) 142
Kzo9I GATC 5 cut(s) 207, 838, 862, 887, 961
LmnI GCTCC 1 cut(s) 467
Lsp1109I GCAGC 1 cut(s) 277
MaeI CTAG 2 cut(s) 543, 785
MaeII ACGT 3 cut(s) 220, 274, 313
MaeIII GTNAC 3 cut(s) 161, 309, 685
MalI GATC 5 cut(s) 209, 840, 864, 889, 963
MbiI CCGCTC 1 cut(s) 113
MboI GATC 5 cut(s) 207, 838, 862, 887, 961
MflI RGATCY 3 cut(s) 207, 862, 887
MhlI GDGCHC 2 cut(s) 319, 672
MluCI AATT 4 cut(s) 602, 691, 934, 977
MlyI GAGTC 2 cut(s) 89, 814
MmeI TCCRAC 2 cut(s) 631, 859
MroI TCCGGA 1 cut(s) 142
MseI TTAA 4 cut(s) 329, 498, 516, 985
MspI CCGG 5 cut(s) 143, 286, 683, 842, 866
MspR9I CCNGG 2 cut(s) 287, 867
MwoI GCNNNNNNNGC 3 cut(s) 223, 266, 275
NciI CCSGG 2 cut(s) 287, 867
NdeII GATC 5 cut(s) 207, 838, 862, 887, 961
NlaIII CATG 1 cut(s) 713
NlaIV GGNNCC 4 cut(s) 6, 469, 526, 864
NmeAIII GCCGAG 1 cut(s) 229
NmuCI GTSAC 1 cut(s) 309
PagI TCATGA 1 cut(s) 709
PcsI WCGNNNNNNNCGW 2 cut(s) 258, 800
PfeI GAWTC 2 cut(s) 83, 625
Pfl23II CGTACG 1 cut(s) 483
PkrI GCNGC 5 cut(s) 271, 292, 382, 448, 451
PleI GAGTC 2 cut(s) 89, 813
PmaCI CACGTG 2 cut(s) 275, 314
PmlI CACGTG 2 cut(s) 275, 314
PpsI GAGTC 2 cut(s) 89, 813
Ppu21I YACGTR 3 cut(s) 221, 275, 314
PpuMI RGGWCCY 1 cut(s) 525
Psp124BI GAGCTC 1 cut(s) 672
Psp5II RGGWCCY 1 cut(s) 525
PspCI CACGTG 2 cut(s) 275, 314
PspFI CCCAGC 1 cut(s) 186
PspLI CGTACG 1 cut(s) 483
PspN4I GGNNCC 4 cut(s) 6, 469, 526, 864
PspPI GGNCC 5 cut(s) 4, 140, 479, 525, 589
PspPPI RGGWCCY 1 cut(s) 525
PsuI RGATCY 3 cut(s) 207, 862, 887
RsaI GTAC 2 cut(s) 247, 485
RsaNI GTAC 2 cut(s) 246, 484
SacI GAGCTC 1 cut(s) 672
SaqAI TTAA 4 cut(s) 329, 498, 516, 985
SatI GCNGC 5 cut(s) 270, 291, 381, 447, 450
Sau3AI GATC 5 cut(s) 207, 838, 862, 887, 961
Sau96I GGNCC 5 cut(s) 4, 140, 479, 525, 589
SchI GAGTC 2 cut(s) 89, 814
ScrFI CCNGG 2 cut(s) 287, 867
SduI GDGCHC 2 cut(s) 319, 672
SinI GGWCC 5 cut(s) 4, 140, 479, 525, 589
Sse9I AATT 4 cut(s) 602, 691, 934, 977
SsiI CCGC 9 cut(s) 111, 258, 270, 378, 381, 444, 447, 450, 827
SspMI CTAG 2 cut(s) 543, 785
SstI GAGCTC 1 cut(s) 672
StyD4I CCNGG 2 cut(s) 285, 865
TaaI ACNGT 4 cut(s) 167, 457, 488, 618
TaiI ACGT 3 cut(s) 223, 277, 316
TaqI TCGA 6 cut(s) 175, 666, 695, 764, 803, 893
TasI AATT 4 cut(s) 602, 691, 934, 977
TauI GCSGC 4 cut(s) 272, 383, 449, 452
TfiI GAWTC 2 cut(s) 83, 625
Tru1I TTAA 4 cut(s) 329, 498, 516, 985
Tru9I TTAA 4 cut(s) 329, 498, 516, 985
TscAI CASTG 1 cut(s) 679
TseFI GTSAC 1 cut(s) 309
TseI GCWGC 1 cut(s) 290
Tsp45I GTSAC 1 cut(s) 309
TspDTI ATGAA 2 cut(s) 620, 695
TspGWI ACGGA 4 cut(s) 149, 340, 361, 471
TspRI CASTG 1 cut(s) 679
VpaK11BI GGWCC 5 cut(s) 4, 140, 479, 525, 589
XagI CCTNNNNNAGG 1 cut(s) 909
XapI RAATTY 1 cut(s) 977
XspI CTAG 2 cut(s) 543, 785
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.