Prupe.2G253000_v2.0.a1

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0014271
Physical Location & Seq
Reverse (-)
26654416 .. 26657823
3408 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G253000.1

Sequence Viewer

Length: 1041 bp
ATGGAAGACGAACACCCCCTCTCACCTCCAGCAGCCCCACCTCATCACCCTCCCCAAGACAACGACAACAACAACAAAAGCCCTGACTCAACCACCGCCTCCACCGCCACAACACCAACAGAAACCAACAACAAAAAGTGCAAGGGCAAGGGAGGCCCCGACAACAACAAGTTCAGGTACCGCGGCGTGCGCCAGCGCAGCTGGGGGAAATGGGTGGCCGAGATCCGCGAGCCTCGTAAGCGGACGCGGAAGTGGCTTGGCACCTTCGCCACCGCCGAGGATGCCGCCCGGGCCTACGACCGGGCCGCCATCATCCTCTACGGTTCCAGGGCCCAGCTCAACCTCCAGCCCTCCGGTGCCAACTCTCAATCGTCCACGCGTGGCTCCTCTTCCTCCTCCTCCTCCTGTAACTCCTCCGCCCAAACCCTAAGACCTCTGCTTCCTCGCCCCTCAGGGTTCGGCCTTACCCTCCCTTTCCCCTCATCAGCCCACCCGGTCCCGCTCATGGCATCGGGGTTCGTTCCGTATGGTGTTGGTGTCGGAGTTTACCCTAGCGTTGCTGCTGCTGCTACCTCGTCCGTTCAGCTGAGTCAGCATCATCCTCATCATATTAATATGAGAGGCCAAGATAATCTTCAAAATAATCCATTATTGCACCAACAACAGCAGCAGCAGCAGCAAGTTGTGGTGCAGCAATTTCATCATCAGTACCCGGTATCTGACGGTGGCGGTGGTGACACGTCAACCTCATATCAAAATCCAAACCCTAGCCATGATCAATACCAACAACTACTTCATCATAATCAAAACAATCAGGCCGATTCTTGTTCGTTCGATGACGGGAATTCGATTATGGGCTCCGGGTTGTCTCTGTCGTCTTCGCAACCCATGCCCGTTGCACCGGGGTGCTCGGATCCGATGAGCGGAGTGGGACCCATGTCTCCGTTAATGTGGCCGTTGACGAGTGAGGAAGAGTGTGCGCCGAGTCTTTGGGACTATGGTGATCCTTTCTTTTTGGATTTTAAAGGATTTGATTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000272 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009755 GO:0009756 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010154 GO:0010182 GO:0010353 GO:0010449 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010896 GO:0016052 GO:0019216 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031930 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0032880 GO:0033993 GO:0034284 GO:0034285 GO:0035266 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044042 GO:0044212 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0050994 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0090207 GO:0090696 GO:0097159 GO:0097305 GO:0097306 GO:0099402 GO:0140110 GO:1901363 GO:1901575 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

347

Amino Acids

37.47

Weight (kDa)

6.52

Isoelectric Point (pI)

62.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40220
fragaria_vesca FvH4_7g24760
malus_domestica MD01G1155400.v1.1 MD07G1224400.v1.1
prunus_persica Prupe.2G253000_v2.0.a1
pyrus_communis pycom01g17270 pycom13g15020
rosa_chinensis RchiOBHm_Chr1g0370631
rosa_laevigata RLG00000027023
rosa_multiflora Rmu_sc0002021.1_g000011
rosa_roxburghii Rroxscaffold_4G00286390
rosa_rugosa Rorug01G0358000
rosa_samantha Rh1AG367500 Rh1BG330800 Rh1CG345000 Rh1DG362300
rosa_wichuraiana Rw1G032340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 177
AccB1I GGYRCC 3 cut(s) 177, 260, 356
AccBSI CCGCTC 2 cut(s) 502, 924
AccII CGCG 4 cut(s) 183, 228, 247, 379
AclWI GGATC 4 cut(s) 217, 908, 921, 998
AcoI YGGCCR 2 cut(s) 216, 953
AcsI RAATTY 1 cut(s) 844
AfaI GTAC 2 cut(s) 179, 710
AfiI CCNNNNNNNGG 3 cut(s) 300, 505, 923
AflIII ACRYGT 2 cut(s) 377, 738
AgsI TTSAA 1 cut(s) 638
AjiI CACGTC 1 cut(s) 741
AjnI CCWGG 1 cut(s) 326
AjuI GAANNNNNNNTTGG 4 cut(s) 618, 650, 777, 809
AleI CACNNNNGTG 1 cut(s) 904
AluBI AGCT 3 cut(s) 201, 337, 586
AluI AGCT 3 cut(s) 201, 337, 586
Alw21I GWGCWC 1 cut(s) 911
Alw26I GTCTC 2 cut(s) 873, 945
AlwI GGATC 4 cut(s) 217, 908, 921, 998
Ama87I CYCGRG 1 cut(s) 288
AoxI GGCC 9 cut(s) 154, 216, 291, 303, 330, 460, 622, 816, 953
ApaI GGGCCC 1 cut(s) 334
ApoI RAATTY 1 cut(s) 844
AseI ATTAAT 1 cut(s) 612
Asp718I GGTACC 1 cut(s) 177
AspLEI GCGC 3 cut(s) 192, 198, 982
AspS9I GGNCC 7 cut(s) 155, 291, 303, 330, 331, 496, 932
AsuC2I CCSGG 7 cut(s) 289, 290, 302, 494, 713, 862, 903
AsuHPI GGTGA 4 cut(s) 15, 38, 746, 1013
AvaI CYCGRG 1 cut(s) 288
AvaII GGWCC 2 cut(s) 496, 932
AxyI CCTNAGG 1 cut(s) 451
BaeGI GKGCMC 1 cut(s) 334
BamHI GGATCC 1 cut(s) 913
BanI GGYRCC 3 cut(s) 177, 260, 356
BanII GRGCYC 2 cut(s) 334, 860
BbsI GAAGAC 2 cut(s) 12, 870
Bbv12I GWGCWC 1 cut(s) 911
BccI CCATC 1 cut(s) 317
BceAI ACGGC 1 cut(s) 940
BciT130I CCWGG 1 cut(s) 328
BclI TGATCA 1 cut(s) 775
BcnI CCSGG 7 cut(s) 289, 290, 302, 494, 713, 862, 903
BcoDI GTCTC 2 cut(s) 873, 945
BfaI CTAG 2 cut(s) 552, 768
BglI GCCNNNNNGGC 1 cut(s) 290
Bme1390I CCNGG 8 cut(s) 289, 290, 302, 328, 494, 713, 862, 903
Bme18I GGWCC 2 cut(s) 496, 932
BmeT110I CYCGRG 1 cut(s) 288
BmgBI CACGTC 1 cut(s) 741
BmgT120I GGNCC 7 cut(s) 155, 291, 303, 330, 331, 496, 932
BmrFI CCNGG 8 cut(s) 289, 290, 302, 328, 494, 713, 862, 903
BmsI GCATC 3 cut(s) 271, 518, 604
BoxI GACNNNNGTC 1 cut(s) 937
BpiI GAAGAC 2 cut(s) 12, 870
BpmI CTGGAG 2 cut(s) 12, 329
BpuMI CCSGG 7 cut(s) 289, 290, 302, 494, 713, 862, 903
BsaJI CCNNGG 5 cut(s) 181, 276, 288, 327, 902
BsaWI WCCGGW 1 cut(s) 353
Bsc4I CCNNNNNNNGG 3 cut(s) 300, 505, 923
Bse21I CCTNAGG 1 cut(s) 451
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 5 cut(s) 181, 276, 288, 327, 902
BseGI GGATG 3 cut(s) 286, 312, 598
BseLI CCNNNNNNNGG 3 cut(s) 300, 505, 923
BseMII CTCAG 2 cut(s) 465, 578
BseRI GAGGAG 5 cut(s) 376, 385, 388, 391, 403
BseSI GKGCMC 1 cut(s) 334
BseYI CCCAGC 2 cut(s) 201, 333
BsgI GTGCAG 1 cut(s) 710
Bsh1236I CGCG 4 cut(s) 183, 228, 247, 379
Bsh1285I CGRYCG 1 cut(s) 301
BshFI GGCC 9 cut(s) 156, 218, 293, 305, 332, 462, 624, 818, 955
BshNI GGYRCC 3 cut(s) 177, 260, 356
BsiEI CGRYCG 1 cut(s) 301
BsiHKAI GWGCWC 1 cut(s) 911
BsiHKCI CYCGRG 1 cut(s) 288
BsiSI CCGG 7 cut(s) 289, 301, 354, 494, 713, 861, 902
BslFI GGGAC 3 cut(s) 482, 945, 1007
BslI CCNNNNNNNGG 3 cut(s) 300, 505, 923
BsmAI GTCTC 2 cut(s) 873, 945
BsmFI GGGAC 3 cut(s) 482, 945, 1007
BsnI GGCC 9 cut(s) 156, 218, 293, 305, 332, 462, 624, 818, 955
BsoBI CYCGRG 1 cut(s) 288
Bsp120I GGGCCC 1 cut(s) 330
Bsp1286I GDGCHC 3 cut(s) 334, 860, 911
Bsp143I GATC 4 cut(s) 222, 775, 913, 1003
BspANI GGCC 9 cut(s) 156, 218, 293, 305, 332, 462, 624, 818, 955
BspCNI CTCAG 2 cut(s) 464, 579
BspFNI CGCG 4 cut(s) 183, 228, 247, 379
BspPI GGATC 4 cut(s) 217, 908, 921, 998
BspT107I GGYRCC 3 cut(s) 177, 260, 356
BsrBI CCGCTC 2 cut(s) 502, 924
BssECI CCNNGG 5 cut(s) 181, 276, 288, 327, 902
BssMI GATC 4 cut(s) 222, 775, 913, 1003
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 2 cut(s) 323, 725
Bst6I CTCTTC 2 cut(s) 394, 966
BstAPI GCANNNNNTGC 1 cut(s) 889
BstC8I GCNNGC 3 cut(s) 188, 194, 230
BstDEI CTNAG 3 cut(s) 428, 451, 587
BstDSI CCRYGG 1 cut(s) 181
BstF5I GGATG 3 cut(s) 286, 312, 598
BstFNI CGCG 4 cut(s) 183, 228, 247, 379
BstHHI GCGC 3 cut(s) 192, 198, 982
BstKTI GATC 4 cut(s) 225, 778, 916, 1006
BstMAI GTCTC 2 cut(s) 873, 945
BstMBI GATC 4 cut(s) 222, 775, 913, 1003
BstMCI CGRYCG 1 cut(s) 301
BstNI CCWGG 1 cut(s) 328
BstPAI GACNNNNGTC 1 cut(s) 937
BstSCI CCNGG 8 cut(s) 287, 288, 300, 326, 492, 711, 860, 901
BstSLI GKGCMC 1 cut(s) 334
BstUI CGCG 4 cut(s) 183, 228, 247, 379
BstV2I GAAGAC 2 cut(s) 12, 870
BstX2I RGATCY 2 cut(s) 222, 913
BstYI RGATCY 2 cut(s) 222, 913
Bsu36I CCTNAGG 1 cut(s) 451
BsuRI GGCC 9 cut(s) 156, 218, 293, 305, 332, 462, 624, 818, 955
BtgI CCRYGG 1 cut(s) 181
BtrI CACGTC 1 cut(s) 741
BtsCI GGATG 3 cut(s) 286, 312, 598
Cac8I GCNNGC 3 cut(s) 188, 194, 230
CfoI GCGC 3 cut(s) 192, 198, 982
Cfr13I GGNCC 7 cut(s) 155, 291, 303, 330, 331, 496, 932
Cfr42I CCGCGG 1 cut(s) 184
Cfr9I CCCGGG 1 cut(s) 288
CseI GACGC 1 cut(s) 253
Csp6I GTAC 2 cut(s) 178, 709
CviAII CATG 4 cut(s) 505, 773, 889, 937
CviQI GTAC 2 cut(s) 178, 709
DdeI CTNAG 3 cut(s) 428, 451, 587
DpnI GATC 4 cut(s) 224, 777, 915, 1005
DpnII GATC 4 cut(s) 222, 775, 913, 1003
DraI TTTAAA 1 cut(s) 1024
EaeI YGGCCR 2 cut(s) 216, 953
Eam1104I CTCTTC 2 cut(s) 394, 966
EarI CTCTTC 2 cut(s) 394, 966
EciI GGCGGA 1 cut(s) 406
Eco24I GRGCYC 2 cut(s) 334, 860
Eco47I GGWCC 2 cut(s) 496, 932
Eco81I CCTNAGG 1 cut(s) 451
Eco88I CYCGRG 1 cut(s) 288
EcoO109I RGGNCCY 3 cut(s) 155, 330, 932
EcoRI GAATTC 1 cut(s) 844
EcoRII CCWGG 1 cut(s) 326
EcoT38I GRGCYC 2 cut(s) 334, 860
FaeI CATG 4 cut(s) 508, 776, 892, 940
FalI AAGNNNNNCTT 2 cut(s) 618, 650
FaqI GGGAC 3 cut(s) 482, 945, 1007
FatI CATG 4 cut(s) 504, 772, 888, 936
FauI CCCGC 1 cut(s) 507
FbaI TGATCA 1 cut(s) 775
FokI GGATG 3 cut(s) 293, 299, 585
FriOI GRGCYC 2 cut(s) 334, 860
FspBI CTAG 2 cut(s) 552, 768
GlaI GCGC 3 cut(s) 191, 197, 981
GsaI CCCAGC 2 cut(s) 205, 337
GsuI CTGGAG 2 cut(s) 12, 329
HaeIII GGCC 9 cut(s) 156, 218, 293, 305, 332, 462, 624, 818, 955
HapII CCGG 7 cut(s) 289, 301, 354, 494, 713, 861, 902
HgaI GACGC 1 cut(s) 253
HhaI GCGC 3 cut(s) 192, 198, 982
Hin1II CATG 4 cut(s) 508, 776, 892, 940
Hin6I GCGC 3 cut(s) 190, 196, 980
HinP1I GCGC 3 cut(s) 190, 196, 980
HincII GTYRAC 2 cut(s) 744, 960
HindII GTYRAC 2 cut(s) 744, 960
HinfI GANTC 5 cut(s) 86, 589, 821, 985, 1034
HpaII CCGG 7 cut(s) 289, 301, 354, 494, 713, 861, 902
HphI GGTGA 4 cut(s) 15, 38, 746, 1013
Hpy166II GTNNAC 4 cut(s) 375, 547, 744, 960
Hpy188I TCNGA 4 cut(s) 542, 721, 913, 918
Hpy188III TCNNGA 1 cut(s) 1038
Hpy8I GTNNAC 4 cut(s) 375, 547, 744, 960
HpyAV CCTTC 1 cut(s) 274
HpyCH4III ACNGT 2 cut(s) 323, 725
HpyCH4IV ACGT 1 cut(s) 740
HpyCH4V TGCA 4 cut(s) 141, 655, 691, 899
HpyF3I CTNAG 3 cut(s) 428, 451, 587
HpySE526I ACGT 1 cut(s) 740
Hsp92II CATG 4 cut(s) 508, 776, 892, 940
HspAI GCGC 3 cut(s) 190, 196, 980
KflI GGGWCCC 1 cut(s) 932
KpnI GGTACC 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 775
KspI CCGCGG 1 cut(s) 184
Kzo9I GATC 4 cut(s) 222, 775, 913, 1003
LmnI GCTCC 2 cut(s) 389, 863
LweI GCATC 3 cut(s) 271, 518, 604
MaeI CTAG 2 cut(s) 552, 768
MaeII ACGT 1 cut(s) 740
MaeIII GTNAC 2 cut(s) 407, 734
MalI GATC 4 cut(s) 224, 777, 915, 1005
MbiI CCGCTC 2 cut(s) 502, 924
MboI GATC 4 cut(s) 222, 775, 913, 1003
MboII GAAGA 5 cut(s) 17, 381, 626, 870, 983
MflI RGATCY 2 cut(s) 222, 913
MhlI GDGCHC 3 cut(s) 334, 860, 911
MluCI AATT 2 cut(s) 695, 844
MluI ACGCGT 1 cut(s) 377
MlyI GAGTC 3 cut(s) 80, 598, 994
MmeI TCCRAC 1 cut(s) 520
MseI TTAA 3 cut(s) 612, 947, 1023
MslI CAYNNNNRTG 1 cut(s) 904
MspA1I CMGCKG 3 cut(s) 183, 201, 586
MspI CCGG 7 cut(s) 289, 301, 354, 494, 713, 861, 902
MspR9I CCNGG 8 cut(s) 289, 290, 302, 328, 494, 713, 862, 903
MvaI CCWGG 1 cut(s) 328
MvnI CGCG 4 cut(s) 183, 228, 247, 379
NciI CCSGG 7 cut(s) 289, 290, 302, 494, 713, 862, 903
NdeII GATC 4 cut(s) 222, 775, 913, 1003
NlaIII CATG 4 cut(s) 508, 776, 892, 940
NmeAIII GCCGAG 3 cut(s) 244, 301, 1008
NmuCI GTSAC 1 cut(s) 734
OliI CACNNNNGTG 1 cut(s) 904
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PfeI GAWTC 2 cut(s) 821, 1034
PleI GAGTC 3 cut(s) 80, 597, 993
PpsI GAGTC 3 cut(s) 80, 597, 993
PpuMI RGGWCCY 1 cut(s) 932
PshAI GACNNNNGTC 1 cut(s) 937
PshBI ATTAAT 1 cut(s) 612
Psp5II RGGWCCY 1 cut(s) 932
Psp6I CCWGG 1 cut(s) 326
PspFI CCCAGC 2 cut(s) 201, 333
PspGI CCWGG 1 cut(s) 326
PspOMI GGGCCC 1 cut(s) 330
PspPI GGNCC 7 cut(s) 155, 291, 303, 330, 331, 496, 932
PspPPI RGGWCCY 1 cut(s) 932
PsuI RGATCY 2 cut(s) 222, 913
PvuII CAGCTG 2 cut(s) 201, 586
RsaI GTAC 2 cut(s) 179, 710
RsaNI GTAC 2 cut(s) 178, 709
RseI CAYNNNNRTG 1 cut(s) 904
SacII CCGCGG 1 cut(s) 184
SaqAI TTAA 3 cut(s) 612, 947, 1023
Sau3AI GATC 4 cut(s) 222, 775, 913, 1003
Sau96I GGNCC 7 cut(s) 155, 291, 303, 330, 331, 496, 932
SchI GAGTC 3 cut(s) 80, 598, 994
ScrFI CCNGG 8 cut(s) 289, 290, 302, 328, 494, 713, 862, 903
SduI GDGCHC 3 cut(s) 334, 860, 911
SfaNI GCATC 3 cut(s) 271, 518, 604
Sfr303I CCGCGG 1 cut(s) 184
SgrBI CCGCGG 1 cut(s) 184
SinI GGWCC 2 cut(s) 496, 932
SmaI CCCGGG 1 cut(s) 290
SmiMI CAYNNNNRTG 1 cut(s) 904
SrfI GCCCGGGC 1 cut(s) 290
Sse9I AATT 2 cut(s) 695, 844
SspMI CTAG 2 cut(s) 552, 768
StyD4I CCNGG 8 cut(s) 287, 288, 300, 326, 492, 711, 860, 901
TaaI ACNGT 2 cut(s) 323, 725
TaiI ACGT 1 cut(s) 743
TaqI TCGA 2 cut(s) 834, 848
TasI AATT 2 cut(s) 695, 844
TauI GCSGC 3 cut(s) 186, 287, 308
TfiI GAWTC 2 cut(s) 821, 1034
Tru1I TTAA 3 cut(s) 612, 947, 1023
Tru9I TTAA 3 cut(s) 612, 947, 1023
TseFI GTSAC 1 cut(s) 734
Tsp45I GTSAC 1 cut(s) 734
TspDTI ATGAA 2 cut(s) 689, 785
TspGWI ACGGA 3 cut(s) 513, 568, 933
TspMI CCCGGG 1 cut(s) 288
VpaK11BI GGWCC 2 cut(s) 496, 932
VspI ATTAAT 1 cut(s) 612
XapI RAATTY 1 cut(s) 844
XmaI CCCGGG 1 cut(s) 288
XspI CTAG 2 cut(s) 552, 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.