RLG00000027023

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0014271
Physical Location & Seq
Forward (+)
7745712 .. 7746728
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027023

Sequence Viewer

Length: 1017 bp
ATGGACGAAGACGACACATCCCCACCTCACCCTCTCCAACGCAACAACGACAACGAAACCGGTGCTGAAACCACCACCACCGCCGCAACCACCACACCAACAACGAATACAACAGAAGCCAAAGACAACAGCAACAATCGAAAGTGCAAGGGCAAAGGTGGTCCGGACAACAACAAGTTCCGCTACCGCGGCGTGCGGCAGCGGAGCTGGGGCAAGTGGGTGGCAGAGATCCGTGAGCCACGTAAGCGCACACGGAAGTGGCTCGGAACCTTCGCCACCGCCGAGGACGCCGCCAAAGCCTACGACCGAGCCGCTATCATTCTCTACGGCTCCAGGGCTCAGCTCAACCTCCAGCCCTCCGGTTCTTCCTCCTCTCAGTCCTCCACGCGCGGCTCTTCTTCCTCATCATCGTCTTCTTCTTCTAGCCAATCCCTAAGACCCCTGCTCCCTCGGCCCTCTGGCTACACAGGCTTCAGCTGTAACTTCGCCGCCTCGGCCCATCCTTACGGATTTGTTCCCTACAATTCTGTTGGGGTTTACCCTAACTCCTCCGTACAGATGAGTAATCAGCTGGAAAATTTAAATCCACAGATCCAACAGCAAGTTGTGGTGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGTTTCATCATTATCCATTATCATCTGATGGTTGCGGTGACGTCATTAACACCACACCAACCTCGTACCCAAACCCTAGTGTCCATGCTCATCAGCAATACCAAGTACACCAGCAACAGGATTTGAATCAGAATCAGAGTTGTACTTCTTACGAGGATATGAACTCGATTGTTGGGTCCGCGGGTTCGAGTTTGTCTATGTCATCGCAGCCCATGGTGGTTGCACCGGCGGTTTCGGATCCGATGATGATGGCACAAGGCGGACCCATGTCGCCGATGTGGCCGCTGACGAACGAGGAAGAGTGTGCCCAGAGTCTGTGGGACTACTACGGTGATCCTTTCTTTTTGGATTTTAAAGGATTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000272 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009755 GO:0009756 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010154 GO:0010182 GO:0010353 GO:0010449 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010896 GO:0016052 GO:0019216 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031930 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0032880 GO:0033993 GO:0034284 GO:0034285 GO:0035266 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044042 GO:0044212 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0050994 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0090207 GO:0090696 GO:0097159 GO:0097305 GO:0097306 GO:0099402 GO:0140110 GO:1901363 GO:1901575 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

339

Amino Acids

37.24

Weight (kDa)

5.98

Isoelectric Point (pI)

61.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 61 - 110 4e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40220
fragaria_vesca FvH4_7g24760
malus_domestica MD01G1155400.v1.1 MD07G1224400.v1.1
prunus_persica Prupe.2G253000_v2.0.a1
pyrus_communis pycom01g17270 pycom13g15020
rosa_chinensis RchiOBHm_Chr1g0370631
rosa_laevigata RLG00000027023
rosa_multiflora Rmu_sc0002021.1_g000011
rosa_roxburghii Rroxscaffold_4G00286390
rosa_rugosa Rorug01G0358000
rosa_samantha Rh1AG367500 Rh1BG330800 Rh1CG345000 Rh1DG362300
rosa_wichuraiana Rw1G032340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 693
AccII CGCG 4 cut(s) 189, 388, 390, 830
AccIII TCCGGA 1 cut(s) 163
AclWI GGATC 5 cut(s) 223, 586, 881, 894, 977
AcoI YGGCCR 1 cut(s) 929
AcsI RAATTY 1 cut(s) 577
AcuI CTGAAG 1 cut(s) 457
AcyI GRCGYC 2 cut(s) 288, 690
AfaI GTAC 4 cut(s) 555, 716, 756, 793
AfiI CCNNNNNNNGG 1 cut(s) 766
AgeI ACCGGT 1 cut(s) 59
AgsI TTSAA 1 cut(s) 775
AjnI CCWGG 1 cut(s) 332
AleI CACNNNNGTG 1 cut(s) 256
AluBI AGCT 4 cut(s) 207, 343, 477, 571
AluI AGCT 4 cut(s) 207, 343, 477, 571
AlwI GGATC 5 cut(s) 223, 586, 881, 894, 977
AlwNI CAGNNNCTG 1 cut(s) 964
Aor13HI TCCGGA 1 cut(s) 163
AoxI GGCC 3 cut(s) 452, 495, 929
ApoI RAATTY 1 cut(s) 577
AsiGI ACCGGT 1 cut(s) 59
AspLEI GCGC 2 cut(s) 249, 390
AspS9I GGNCC 5 cut(s) 161, 453, 496, 825, 911
AsuHPI GGTGA 3 cut(s) 20, 698, 992
AvaII GGWCC 3 cut(s) 161, 825, 911
BaeGI GKGCMC 1 cut(s) 958
BamHI GGATCC 1 cut(s) 886
BanII GRGCYC 1 cut(s) 340
BbsI GAAGAC 2 cut(s) 15, 405
BccI CCATC 3 cut(s) 507, 671, 892
BceAI ACGGC 1 cut(s) 343
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BciT130I CCWGG 1 cut(s) 334
BfaI CTAG 2 cut(s) 423, 726
BglI GCCNNNNNGGC 2 cut(s) 494, 928
BlpI GCTNAGC 1 cut(s) 339
Bme1390I CCNGG 1 cut(s) 334
Bme18I GGWCC 3 cut(s) 161, 825, 911
BmgT120I GGNCC 5 cut(s) 161, 453, 496, 825, 911
BmiI GGNNCC 5 cut(s) 268, 331, 826, 888, 913
BmrFI CCNGG 1 cut(s) 334
BoxI GACNNNNGTC 1 cut(s) 916
BpiI GAAGAC 2 cut(s) 15, 405
BpmI CTGGAG 2 cut(s) 316, 335
Bpu1102I GCTNAGC 1 cut(s) 339
BsaAI YACGTR 1 cut(s) 242
BsaBI GATNNNNATC 1 cut(s) 774
BsaHI GRCGYC 2 cut(s) 288, 690
BsaJI CCNNGG 7 cut(s) 187, 282, 333, 449, 492, 828, 861
BsaWI WCCGGW 3 cut(s) 59, 163, 359
BsaXI ACNNNNNCTCC 4 cut(s) 429, 459, 530, 560
Bsc4I CCNNNNNNNGG 1 cut(s) 766
Bse118I RCCGGY 2 cut(s) 59, 874
Bse8I GATNNNNATC 1 cut(s) 774
BseAI TCCGGA 1 cut(s) 163
BseBI CCWGG 1 cut(s) 334
BseDI CCNNGG 7 cut(s) 187, 282, 333, 449, 492, 828, 861
BseGI GGATG 2 cut(s) 17, 499
BseJI GATNNNNATC 1 cut(s) 774
BseLI CCNNNNNNNGG 1 cut(s) 766
BseMII CTCAG 2 cut(s) 353, 389
BseRI GAGGAG 2 cut(s) 361, 538
BseSI GKGCMC 1 cut(s) 958
BseYI CCCAGC 1 cut(s) 207
BsgI GTGCAG 1 cut(s) 632
Bsh1236I CGCG 4 cut(s) 189, 388, 390, 830
Bsh1285I CGRYCG 1 cut(s) 307
BshFI GGCC 3 cut(s) 454, 497, 931
BshTI ACCGGT 1 cut(s) 59
BsiEI CGRYCG 1 cut(s) 307
BsiSI CCGG 4 cut(s) 60, 164, 360, 875
BslFI GGGAC 1 cut(s) 983
BslI CCNNNNNNNGG 1 cut(s) 766
BsmFI GGGAC 1 cut(s) 983
BsnI GGCC 3 cut(s) 454, 497, 931
Bsp1286I GDGCHC 2 cut(s) 340, 958
Bsp13I TCCGGA 1 cut(s) 163
Bsp143I GATC 4 cut(s) 228, 591, 886, 982
Bsp1720I GCTNAGC 1 cut(s) 339
Bsp19I CCATGG 1 cut(s) 861
BspANI GGCC 3 cut(s) 454, 497, 931
BspCNI CTCAG 2 cut(s) 352, 388
BspEI TCCGGA 1 cut(s) 163
BspFNI CGCG 4 cut(s) 189, 388, 390, 830
BspLI GGNNCC 5 cut(s) 268, 331, 826, 888, 913
BspPI GGATC 5 cut(s) 223, 586, 881, 894, 977
BspQI GCTCTTC 1 cut(s) 400
BsrFI RCCGGY 2 cut(s) 59, 874
BssAI RCCGGY 2 cut(s) 59, 874
BssECI CCNNGG 7 cut(s) 187, 282, 333, 449, 492, 828, 861
BssMI GATC 4 cut(s) 228, 591, 886, 982
BssNI GRCGYC 2 cut(s) 288, 690
BssT1I CCWWGG 1 cut(s) 861
Bst2UI CCWGG 1 cut(s) 334
Bst4CI ACNGT 2 cut(s) 651, 980
Bst6I CTCTTC 2 cut(s) 400, 942
BstACI GRCGYC 2 cut(s) 288, 690
BstBAI YACGTR 1 cut(s) 242
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 3 cut(s) 339, 375, 434
BstDSI CCRYGG 3 cut(s) 187, 828, 861
BstF5I GGATG 2 cut(s) 17, 499
BstFNI CGCG 4 cut(s) 189, 388, 390, 830
BstHHI GCGC 2 cut(s) 249, 390
BstKTI GATC 4 cut(s) 231, 594, 889, 985
BstMBI GATC 4 cut(s) 228, 591, 886, 982
BstMCI CGRYCG 1 cut(s) 307
BstNI CCWGG 1 cut(s) 334
BstPAI GACNNNNGTC 1 cut(s) 916
BstSCI CCNGG 1 cut(s) 332
BstSLI GKGCMC 1 cut(s) 958
BstUI CGCG 4 cut(s) 189, 388, 390, 830
BstV2I GAAGAC 2 cut(s) 15, 405
BstX2I RGATCY 3 cut(s) 228, 591, 886
BstYI RGATCY 3 cut(s) 228, 591, 886
BsuRI GGCC 3 cut(s) 454, 497, 931
BtgI CCRYGG 3 cut(s) 187, 828, 861
BtgZI GCGATG 1 cut(s) 837
BtsCI GGATG 2 cut(s) 17, 499
Cac8I GCNNGC 1 cut(s) 194
CaiI CAGNNNCTG 1 cut(s) 964
CfoI GCGC 2 cut(s) 249, 390
Cfr10I RCCGGY 2 cut(s) 59, 874
Cfr13I GGNCC 5 cut(s) 161, 453, 496, 825, 911
Cfr42I CCGCGG 2 cut(s) 190, 831
CseI GACGC 1 cut(s) 296
Csp6I GTAC 4 cut(s) 554, 715, 755, 792
CspAI ACCGGT 1 cut(s) 59
CviAII CATG 3 cut(s) 734, 862, 916
CviQI GTAC 4 cut(s) 554, 715, 755, 792
DdeI CTNAG 3 cut(s) 339, 375, 434
DpnI GATC 4 cut(s) 230, 593, 888, 984
DpnII GATC 4 cut(s) 228, 591, 886, 982
DraI TTTAAA 2 cut(s) 582, 1003
EaeI YGGCCR 1 cut(s) 929
Eam1104I CTCTTC 2 cut(s) 400, 942
EarI CTCTTC 2 cut(s) 400, 942
EciI GGCGGA 1 cut(s) 924
Eco130I CCWWGG 1 cut(s) 861
Eco24I GRGCYC 1 cut(s) 340
Eco47I GGWCC 3 cut(s) 161, 825, 911
Eco57I CTGAAG 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 332
EcoT14I CCWWGG 1 cut(s) 861
EcoT38I GRGCYC 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 861
FaeI CATG 3 cut(s) 737, 865, 919
FaiI YATR 5 cut(s) 735, 809, 848, 863, 917
FaqI GGGAC 1 cut(s) 983
FatI CATG 3 cut(s) 733, 861, 915
FauI CCCGC 1 cut(s) 823
FokI GGATG 2 cut(s) 4, 486
FriOI GRGCYC 1 cut(s) 340
FspBI CTAG 2 cut(s) 423, 726
GlaI GCGC 2 cut(s) 248, 389
GsaI CCCAGC 1 cut(s) 211
GsuI CTGGAG 2 cut(s) 316, 335
HaeIII GGCC 3 cut(s) 454, 497, 931
HapII CCGG 4 cut(s) 60, 164, 360, 875
HgaI GACGC 1 cut(s) 296
HhaI GCGC 2 cut(s) 249, 390
Hin1I GRCGYC 2 cut(s) 288, 690
Hin1II CATG 3 cut(s) 737, 865, 919
Hin6I GCGC 2 cut(s) 247, 388
HinP1I GCGC 2 cut(s) 247, 388
HinfI GANTC 3 cut(s) 775, 781, 961
HpaII CCGG 4 cut(s) 60, 164, 360, 875
HphI GGTGA 3 cut(s) 20, 698, 992
Hpy166II GTNNAC 2 cut(s) 538, 757
Hpy188I TCNGA 6 cut(s) 266, 676, 780, 786, 886, 891
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 2 cut(s) 538, 757
HpyAV CCTTC 1 cut(s) 280
HpyCH4III ACNGT 2 cut(s) 651, 980
HpyCH4IV ACGT 2 cut(s) 241, 690
HpyCH4V TGCA 3 cut(s) 147, 613, 872
HpyF3I CTNAG 3 cut(s) 339, 375, 434
HpySE526I ACGT 2 cut(s) 241, 690
Hsp92I GRCGYC 2 cut(s) 288, 690
Hsp92II CATG 3 cut(s) 737, 865, 919
HspAI GCGC 2 cut(s) 247, 388
Kpn2I TCCGGA 1 cut(s) 163
KspI CCGCGG 2 cut(s) 190, 831
Kzo9I GATC 4 cut(s) 228, 591, 886, 982
LguI GCTCTTC 1 cut(s) 400
LmnI GCTCC 3 cut(s) 204, 335, 450
MaeI CTAG 2 cut(s) 423, 726
MaeII ACGT 2 cut(s) 241, 690
MaeIII GTNAC 2 cut(s) 479, 686
MalI GATC 4 cut(s) 230, 593, 888, 984
MboI GATC 4 cut(s) 228, 591, 886, 982
MboII GAAGA 8 cut(s) 20, 357, 387, 390, 405, 408, 411, 959
MflI RGATCY 3 cut(s) 228, 591, 886
MhlI GDGCHC 2 cut(s) 340, 958
MluCI AATT 2 cut(s) 523, 577
MlyI GAGTC 1 cut(s) 970
MmeI TCCRAC 2 cut(s) 61, 619
MroI TCCGGA 1 cut(s) 163
MseI TTAA 3 cut(s) 581, 696, 1002
MslI CAYNNNNRTG 1 cut(s) 256
MspA1I CMGCKG 6 cut(s) 189, 202, 477, 571, 830, 934
MspI CCGG 4 cut(s) 60, 164, 360, 875
MspR9I CCNGG 1 cut(s) 334
MvaI CCWGG 1 cut(s) 334
MvnI CGCG 4 cut(s) 189, 388, 390, 830
NcoI CCATGG 1 cut(s) 861
NdeII GATC 4 cut(s) 228, 591, 886, 982
NlaIII CATG 3 cut(s) 737, 865, 919
NlaIV GGNNCC 5 cut(s) 268, 331, 826, 888, 913
NmeAIII GCCGAG 3 cut(s) 307, 430, 473
NmuCI GTSAC 1 cut(s) 686
OliI CACNNNNGTG 1 cut(s) 256
PciSI GCTCTTC 1 cut(s) 400
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PfeI GAWTC 2 cut(s) 775, 781
PinAI ACCGGT 1 cut(s) 59
PleI GAGTC 1 cut(s) 969
PpsI GAGTC 1 cut(s) 969
Ppu21I YACGTR 1 cut(s) 242
PshAI GACNNNNGTC 1 cut(s) 916
Psp6I CCWGG 1 cut(s) 332
PspFI CCCAGC 1 cut(s) 207
PspGI CCWGG 1 cut(s) 332
PspN4I GGNNCC 5 cut(s) 268, 331, 826, 888, 913
PspPI GGNCC 5 cut(s) 161, 453, 496, 825, 911
PstNI CAGNNNCTG 1 cut(s) 964
PsuI RGATCY 3 cut(s) 228, 591, 886
PvuII CAGCTG 2 cut(s) 477, 571
RsaI GTAC 4 cut(s) 555, 716, 756, 793
RsaNI GTAC 4 cut(s) 554, 715, 755, 792
RseI CAYNNNNRTG 1 cut(s) 256
SacII CCGCGG 2 cut(s) 190, 831
SapI GCTCTTC 1 cut(s) 400
SaqAI TTAA 3 cut(s) 581, 696, 1002
Sau3AI GATC 4 cut(s) 228, 591, 886, 982
Sau96I GGNCC 5 cut(s) 161, 453, 496, 825, 911
SchI GAGTC 1 cut(s) 970
ScrFI CCNGG 1 cut(s) 334
SduI GDGCHC 2 cut(s) 340, 958
Sfr303I CCGCGG 2 cut(s) 190, 831
SgrAI CRCCGGYG 1 cut(s) 874
SgrBI CCGCGG 2 cut(s) 190, 831
SinI GGWCC 3 cut(s) 161, 825, 911
SmiI ATTTAAAT 1 cut(s) 582
SmiMI CAYNNNNRTG 1 cut(s) 256
Sse9I AATT 2 cut(s) 523, 577
SspMI CTAG 2 cut(s) 423, 726
StyD4I CCNGG 1 cut(s) 332
StyI CCWWGG 1 cut(s) 861
SwaI ATTTAAAT 1 cut(s) 582
TaaI ACNGT 2 cut(s) 651, 980
TaiI ACGT 2 cut(s) 244, 693
TaqI TCGA 3 cut(s) 139, 815, 836
TaqII GACCGA 1 cut(s) 321
TasI AATT 2 cut(s) 523, 577
TatI WGTACW 2 cut(s) 754, 791
TauI GCSGC 8 cut(s) 86, 192, 199, 293, 314, 393, 491, 934
TfiI GAWTC 2 cut(s) 775, 781
Tru1I TTAA 3 cut(s) 581, 696, 1002
Tru9I TTAA 3 cut(s) 581, 696, 1002
TseFI GTSAC 1 cut(s) 686
Tsp45I GTSAC 1 cut(s) 686
TspDTI ATGAA 2 cut(s) 644, 824
TspGWI ACGGA 4 cut(s) 221, 268, 522, 541
VpaK11BI GGWCC 3 cut(s) 161, 825, 911
XapI RAATTY 1 cut(s) 577
XspI CTAG 2 cut(s) 423, 726
ZraI GACGTC 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.