Rw1G032340

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0014271
Physical Location & Seq
Reverse (-)
60630435 .. 60631430
996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G032340.1

Sequence Viewer

Length: 996 bp
ATGGACGAAGACGACACATCCCCACCTCACCGTCTCCAACGCAACAACGACAACGAAACCGGTGTTGAAACCACCACCGCCGCAACTACCACACCAACAACGAATACAACAGAAGCCAAAGACAACAGCAACAATCGAAAGTGCAAGGGCAAAGGTGGTCCGGACAACAACAAGTTCCGCTACCGCGGAGTGCGGCAGCGGAGCTGGGGCAAGTGGGTGGCGGAGATCCGTGAGCCACGTAAGCGCACACGGAAGTGGCTCGGGACCTTCGCCACCGCGGAGGACGCCGCCAAAGCCTACGACCGAGCCGCTATCATTCTCTACGGCTCCAGGGCTCAGCTCAACCTCCAGCCCTCCGGTTCTTCCTCCTCTCAGTCCTCCACGCGCGGCTCTTCTTCCTCATCATCGTCTTCTTCTTCCAGCCAAACCCTAAGACCCCTGCTCCCTCGGCCCTCCGGCTACCCAGGCTTCAGCTGTAACTTCGCCGCCTCGGCCCATCCTTACGGATTTGTTCCCTACAATTCTGTTGGGGTTTACCCTAACTCCTCCGCACAGATGAGTAATCAGCTGGACAATTTAAATCCACAGATCCAACAGCAAGTTGTGGTGCAGCAACAGCAGCAGCAACAGTTTCATCATTATCCATTATCATCGGATGGTTGCGGTGACGTCATTAACACCACACCAACCTCGTACCCAAACCCTAGTGTCCATGCTCATCAGCAATACCAAGTACACCAGCAGCAGGATTTGAATCAGAATCAGAGTTGTACTTCTTACGAGGATATGAACTCGATTGTTGGGTCCGCGGGTTCGAGTTTGTCTATGTCATCGCAGCCCATGGTGGTTGCACCGGCTGTTTCGGATCCGATGATGATGGCACAAGGCGGACCCATGTCGCCGATGTGGCCGCTGACGAACGAGGAAGAGTGTGCCCAGAGTCTGTGGGACTACTACGGTGATCCTTTCTTTTCGGATTTTAAAGGATTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000272 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009755 GO:0009756 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010154 GO:0010182 GO:0010353 GO:0010449 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010896 GO:0016052 GO:0019216 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031930 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0032880 GO:0033993 GO:0034284 GO:0034285 GO:0035266 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044042 GO:0044212 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0050994 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0090207 GO:0090696 GO:0097159 GO:0097305 GO:0097306 GO:0099402 GO:0140110 GO:1901363 GO:1901575 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

331

Amino Acids

36.4

Weight (kDa)

6.16

Isoelectric Point (pI)

58.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 60 - 109 3.9e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40220
fragaria_vesca FvH4_7g24760
malus_domestica MD01G1155400.v1.1 MD07G1224400.v1.1
prunus_persica Prupe.2G253000_v2.0.a1
pyrus_communis pycom01g17270 pycom13g15020
rosa_chinensis RchiOBHm_Chr1g0370631
rosa_laevigata RLG00000027023
rosa_multiflora Rmu_sc0002021.1_g000011
rosa_roxburghii Rroxscaffold_4G00286390
rosa_rugosa Rorug01G0358000
rosa_samantha Rh1AG367500 Rh1BG330800 Rh1CG345000 Rh1DG362300
rosa_wichuraiana Rw1G032340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 672
AccII CGCG 5 cut(s) 186, 278, 385, 387, 809
AccIII TCCGGA 1 cut(s) 160
AclWI GGATC 5 cut(s) 220, 583, 860, 873, 956
AcoI YGGCCR 1 cut(s) 908
AcuI CTGAAG 1 cut(s) 454
AcyI GRCGYC 2 cut(s) 285, 669
AfaI GTAC 3 cut(s) 695, 735, 772
AfiI CCNNNNNNNGG 1 cut(s) 745
AgeI ACCGGT 1 cut(s) 59
AgsI TTSAA 2 cut(s) 68, 754
AjnI CCWGG 2 cut(s) 329, 463
AleI CACNNNNGTG 1 cut(s) 253
AluBI AGCT 4 cut(s) 204, 340, 474, 568
AluI AGCT 4 cut(s) 204, 340, 474, 568
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 5 cut(s) 220, 583, 860, 873, 956
AlwNI CAGNNNCTG 1 cut(s) 943
Ama87I CYCGRG 1 cut(s) 260
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 3 cut(s) 449, 492, 908
ApeKI GCWGC 6 cut(s) 196, 610, 619, 622, 742, 835
AsiGI ACCGGT 1 cut(s) 59
AspLEI GCGC 2 cut(s) 246, 387
AspS9I GGNCC 6 cut(s) 158, 264, 450, 493, 804, 890
AsuHPI GGTGA 3 cut(s) 20, 677, 971
AvaI CYCGRG 1 cut(s) 260
AvaII GGWCC 4 cut(s) 158, 264, 804, 890
BaeGI GKGCMC 1 cut(s) 937
BamHI GGATCC 1 cut(s) 865
BanII GRGCYC 1 cut(s) 337
BbsI GAAGAC 2 cut(s) 15, 402
BbvI GCAGC 6 cut(s) 208, 622, 631, 634, 754, 847
BccI CCATC 3 cut(s) 504, 650, 871
BceAI ACGGC 1 cut(s) 340
BciT130I CCWGG 2 cut(s) 331, 465
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 1 cut(s) 705
BglI GCCNNNNNGGC 2 cut(s) 491, 907
BlpI GCTNAGC 1 cut(s) 336
Bme1390I CCNGG 2 cut(s) 331, 465
Bme18I GGWCC 4 cut(s) 158, 264, 804, 890
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 6 cut(s) 158, 264, 450, 493, 804, 890
BmiI GGNNCC 5 cut(s) 265, 328, 805, 867, 892
BmrFI CCNGG 2 cut(s) 331, 465
BoxI GACNNNNGTC 1 cut(s) 895
BpiI GAAGAC 2 cut(s) 15, 402
BpmI CTGGAG 2 cut(s) 313, 332
Bpu1102I GCTNAGC 1 cut(s) 336
BsaAI YACGTR 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 753
BsaHI GRCGYC 2 cut(s) 285, 669
BsaJI CCNNGG 8 cut(s) 184, 276, 330, 446, 463, 489, 807, 840
BsaWI WCCGGW 3 cut(s) 59, 160, 356
BsaXI ACNNNNNCTCC 4 cut(s) 426, 456, 527, 557
Bsc4I CCNNNNNNNGG 1 cut(s) 745
Bse118I RCCGGY 2 cut(s) 59, 853
Bse8I GATNNNNATC 1 cut(s) 753
BseAI TCCGGA 1 cut(s) 160
BseBI CCWGG 2 cut(s) 331, 465
BseDI CCNNGG 8 cut(s) 184, 276, 330, 446, 463, 489, 807, 840
BseGI GGATG 3 cut(s) 17, 496, 661
BseJI GATNNNNATC 1 cut(s) 753
BseLI CCNNNNNNNGG 1 cut(s) 745
BseMII CTCAG 2 cut(s) 350, 386
BseRI GAGGAG 2 cut(s) 358, 535
BseSI GKGCMC 1 cut(s) 937
BseXI GCAGC 6 cut(s) 208, 622, 631, 634, 754, 847
BseYI CCCAGC 1 cut(s) 204
BsgI GTGCAG 1 cut(s) 629
Bsh1236I CGCG 5 cut(s) 186, 278, 385, 387, 809
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 3 cut(s) 451, 494, 910
BshTI ACCGGT 1 cut(s) 59
BsiEI CGRYCG 1 cut(s) 304
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 5 cut(s) 60, 161, 357, 456, 854
BslFI GGGAC 2 cut(s) 277, 962
BslI CCNNNNNNNGG 1 cut(s) 745
BsmAI GTCTC 1 cut(s) 38
BsmBI CGTCTC 1 cut(s) 38
BsmFI GGGAC 2 cut(s) 277, 962
BsnI GGCC 3 cut(s) 451, 494, 910
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 2 cut(s) 337, 937
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 4 cut(s) 225, 588, 865, 961
Bsp1720I GCTNAGC 1 cut(s) 336
Bsp19I CCATGG 1 cut(s) 840
BspANI GGCC 3 cut(s) 451, 494, 910
BspCNI CTCAG 2 cut(s) 349, 385
BspEI TCCGGA 1 cut(s) 160
BspFNI CGCG 5 cut(s) 186, 278, 385, 387, 809
BspLI GGNNCC 5 cut(s) 265, 328, 805, 867, 892
BspPI GGATC 5 cut(s) 220, 583, 860, 873, 956
BspQI GCTCTTC 1 cut(s) 397
BsrFI RCCGGY 2 cut(s) 59, 853
BssAI RCCGGY 2 cut(s) 59, 853
BssECI CCNNGG 8 cut(s) 184, 276, 330, 446, 463, 489, 807, 840
BssMI GATC 4 cut(s) 225, 588, 865, 961
BssNI GRCGYC 2 cut(s) 285, 669
BssT1I CCWWGG 1 cut(s) 840
Bst2UI CCWGG 2 cut(s) 331, 465
Bst4CI ACNGT 3 cut(s) 32, 630, 959
Bst6I CTCTTC 2 cut(s) 397, 921
BstACI GRCGYC 2 cut(s) 285, 669
BstBAI YACGTR 1 cut(s) 239
BstDEI CTNAG 3 cut(s) 336, 372, 431
BstDSI CCRYGG 4 cut(s) 184, 276, 807, 840
BstF5I GGATG 3 cut(s) 17, 496, 661
BstFNI CGCG 5 cut(s) 186, 278, 385, 387, 809
BstHHI GCGC 2 cut(s) 246, 387
BstKTI GATC 4 cut(s) 228, 591, 868, 964
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 4 cut(s) 225, 588, 865, 961
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 9 cut(s) 241, 284, 293, 448, 465, 491, 616, 619, 907
BstNI CCWGG 2 cut(s) 331, 465
BstPAI GACNNNNGTC 1 cut(s) 895
BstSCI CCNGG 2 cut(s) 329, 463
BstSLI GKGCMC 1 cut(s) 937
BstUI CGCG 5 cut(s) 186, 278, 385, 387, 809
BstV1I GCAGC 6 cut(s) 208, 622, 631, 634, 754, 847
BstV2I GAAGAC 2 cut(s) 15, 402
BstX2I RGATCY 3 cut(s) 225, 588, 865
BstYI RGATCY 3 cut(s) 225, 588, 865
BsuRI GGCC 3 cut(s) 451, 494, 910
BtgI CCRYGG 4 cut(s) 184, 276, 807, 840
BtgZI GCGATG 1 cut(s) 816
BtsCI GGATG 3 cut(s) 17, 496, 661
CaiI CAGNNNCTG 1 cut(s) 943
CfoI GCGC 2 cut(s) 246, 387
Cfr10I RCCGGY 2 cut(s) 59, 853
Cfr13I GGNCC 6 cut(s) 158, 264, 450, 493, 804, 890
Cfr42I CCGCGG 3 cut(s) 187, 279, 810
CseI GACGC 1 cut(s) 293
Csp6I GTAC 3 cut(s) 694, 734, 771
CspAI ACCGGT 1 cut(s) 59
CviAII CATG 3 cut(s) 713, 841, 895
CviQI GTAC 3 cut(s) 694, 734, 771
DdeI CTNAG 3 cut(s) 336, 372, 431
DpnI GATC 4 cut(s) 227, 590, 867, 963
DpnII GATC 4 cut(s) 225, 588, 865, 961
DraI TTTAAA 2 cut(s) 579, 982
EaeI YGGCCR 1 cut(s) 908
Eam1104I CTCTTC 2 cut(s) 397, 921
EarI CTCTTC 2 cut(s) 397, 921
EciI GGCGGA 2 cut(s) 236, 903
Eco130I CCWWGG 1 cut(s) 840
Eco24I GRGCYC 1 cut(s) 337
Eco47I GGWCC 4 cut(s) 158, 264, 804, 890
Eco57I CTGAAG 1 cut(s) 454
Eco88I CYCGRG 1 cut(s) 260
EcoO109I RGGNCCY 1 cut(s) 264
EcoRII CCWGG 2 cut(s) 329, 463
EcoT14I CCWWGG 1 cut(s) 840
EcoT38I GRGCYC 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 840
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 3 cut(s) 716, 844, 898
FaiI YATR 5 cut(s) 714, 788, 827, 842, 896
FaqI GGGAC 2 cut(s) 277, 962
FatI CATG 3 cut(s) 712, 840, 894
FauI CCCGC 1 cut(s) 802
FokI GGATG 3 cut(s) 4, 483, 668
FriOI GRGCYC 1 cut(s) 337
FspBI CTAG 1 cut(s) 705
GlaI GCGC 2 cut(s) 245, 386
GsaI CCCAGC 1 cut(s) 208
GsuI CTGGAG 2 cut(s) 313, 332
HaeIII GGCC 3 cut(s) 451, 494, 910
HapII CCGG 5 cut(s) 60, 161, 357, 456, 854
HgaI GACGC 1 cut(s) 293
HhaI GCGC 2 cut(s) 246, 387
Hin1I GRCGYC 2 cut(s) 285, 669
Hin1II CATG 3 cut(s) 716, 844, 898
Hin6I GCGC 2 cut(s) 244, 385
HinP1I GCGC 2 cut(s) 244, 385
HinfI GANTC 3 cut(s) 754, 760, 940
HpaII CCGG 5 cut(s) 60, 161, 357, 456, 854
HphI GGTGA 3 cut(s) 20, 677, 971
Hpy166II GTNNAC 2 cut(s) 535, 736
Hpy188I TCNGA 6 cut(s) 655, 759, 765, 865, 870, 976
Hpy188III TCNNGA 2 cut(s) 161, 262
Hpy8I GTNNAC 2 cut(s) 535, 736
HpyAV CCTTC 1 cut(s) 277
HpyCH4III ACNGT 3 cut(s) 32, 630, 959
HpyCH4IV ACGT 2 cut(s) 238, 669
HpyCH4V TGCA 3 cut(s) 144, 610, 851
HpyF10VI GCNNNNNNNGC 9 cut(s) 241, 284, 293, 448, 465, 491, 616, 619, 907
HpyF3I CTNAG 3 cut(s) 336, 372, 431
HpySE526I ACGT 2 cut(s) 238, 669
Hsp92I GRCGYC 2 cut(s) 285, 669
Hsp92II CATG 3 cut(s) 716, 844, 898
HspAI GCGC 2 cut(s) 244, 385
Kpn2I TCCGGA 1 cut(s) 160
KspI CCGCGG 3 cut(s) 187, 279, 810
Kzo9I GATC 4 cut(s) 225, 588, 865, 961
LguI GCTCTTC 1 cut(s) 397
LmnI GCTCC 3 cut(s) 201, 332, 447
Lsp1109I GCAGC 6 cut(s) 208, 622, 631, 634, 754, 847
MaeI CTAG 1 cut(s) 705
MaeII ACGT 2 cut(s) 238, 669
MaeIII GTNAC 2 cut(s) 476, 665
MalI GATC 4 cut(s) 227, 590, 867, 963
MboI GATC 4 cut(s) 225, 588, 865, 961
MboII GAAGA 8 cut(s) 20, 354, 384, 387, 402, 405, 408, 938
MflI RGATCY 3 cut(s) 225, 588, 865
MhlI GDGCHC 2 cut(s) 337, 937
MluCI AATT 2 cut(s) 520, 574
MlyI GAGTC 1 cut(s) 949
MmeI TCCRAC 2 cut(s) 61, 616
MroI TCCGGA 1 cut(s) 160
MseI TTAA 3 cut(s) 578, 675, 981
MslI CAYNNNNRTG 1 cut(s) 253
MspA1I CMGCKG 7 cut(s) 186, 199, 278, 474, 568, 809, 913
MspI CCGG 5 cut(s) 60, 161, 357, 456, 854
MspR9I CCNGG 2 cut(s) 331, 465
MvaI CCWGG 2 cut(s) 331, 465
MvnI CGCG 5 cut(s) 186, 278, 385, 387, 809
MwoI GCNNNNNNNGC 9 cut(s) 241, 284, 293, 448, 465, 491, 616, 619, 907
NcoI CCATGG 1 cut(s) 840
NdeII GATC 4 cut(s) 225, 588, 865, 961
NlaIII CATG 3 cut(s) 716, 844, 898
NlaIV GGNNCC 5 cut(s) 265, 328, 805, 867, 892
NmeAIII GCCGAG 2 cut(s) 427, 470
NmuCI GTSAC 1 cut(s) 665
OliI CACNNNNGTG 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 397
PfeI GAWTC 2 cut(s) 754, 760
PinAI ACCGGT 1 cut(s) 59
PleI GAGTC 1 cut(s) 948
PpsI GAGTC 1 cut(s) 948
Ppu21I YACGTR 1 cut(s) 239
PpuMI RGGWCCY 1 cut(s) 264
PshAI GACNNNNGTC 1 cut(s) 895
Psp5II RGGWCCY 1 cut(s) 264
Psp6I CCWGG 2 cut(s) 329, 463
PspFI CCCAGC 1 cut(s) 204
PspGI CCWGG 2 cut(s) 329, 463
PspN4I GGNNCC 5 cut(s) 265, 328, 805, 867, 892
PspPI GGNCC 6 cut(s) 158, 264, 450, 493, 804, 890
PspPPI RGGWCCY 1 cut(s) 264
PstNI CAGNNNCTG 1 cut(s) 943
PsuI RGATCY 3 cut(s) 225, 588, 865
PvuII CAGCTG 2 cut(s) 474, 568
RsaI GTAC 3 cut(s) 695, 735, 772
RsaNI GTAC 3 cut(s) 694, 734, 771
RseI CAYNNNNRTG 1 cut(s) 253
SacII CCGCGG 3 cut(s) 187, 279, 810
SapI GCTCTTC 1 cut(s) 397
SaqAI TTAA 3 cut(s) 578, 675, 981
Sau3AI GATC 4 cut(s) 225, 588, 865, 961
Sau96I GGNCC 6 cut(s) 158, 264, 450, 493, 804, 890
SchI GAGTC 1 cut(s) 949
ScrFI CCNGG 2 cut(s) 331, 465
SduI GDGCHC 2 cut(s) 337, 937
Sfr303I CCGCGG 3 cut(s) 187, 279, 810
SgrBI CCGCGG 3 cut(s) 187, 279, 810
SinI GGWCC 4 cut(s) 158, 264, 804, 890
SmiI ATTTAAAT 1 cut(s) 579
SmiMI CAYNNNNRTG 1 cut(s) 253
Sse9I AATT 2 cut(s) 520, 574
SspMI CTAG 1 cut(s) 705
StyD4I CCNGG 2 cut(s) 329, 463
StyI CCWWGG 1 cut(s) 840
SwaI ATTTAAAT 1 cut(s) 579
TaaI ACNGT 3 cut(s) 32, 630, 959
TaiI ACGT 2 cut(s) 241, 672
TaqI TCGA 3 cut(s) 136, 794, 815
TaqII GACCGA 1 cut(s) 318
TasI AATT 2 cut(s) 520, 574
TatI WGTACW 2 cut(s) 733, 770
TauI GCSGC 7 cut(s) 83, 196, 290, 311, 390, 488, 913
TfiI GAWTC 2 cut(s) 754, 760
Tru1I TTAA 3 cut(s) 578, 675, 981
Tru9I TTAA 3 cut(s) 578, 675, 981
TseFI GTSAC 1 cut(s) 665
TseI GCWGC 6 cut(s) 196, 610, 619, 622, 742, 835
Tsp45I GTSAC 1 cut(s) 665
TspDTI ATGAA 2 cut(s) 623, 803
TspGWI ACGGA 3 cut(s) 218, 265, 519
VpaK11BI GGWCC 4 cut(s) 158, 264, 804, 890
XspI CTAG 1 cut(s) 705
ZraI GACGTC 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.