RchiOBHm_Chr1g0370631

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0014271
Physical Location & Seq
Reverse (-)
60119087 .. 60120076
990 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59478

Sequence Viewer

Length: 990 bp
ATGGACGAAGACGACACATCCCCACCTCACCCTCTCCAACGCAACAACGACAACGACAACGAAACCGGTGTTGAAACCACCGCCGCCGCAACTACCACACCAACAACGAATACAACAGAAGCCAAAGACAACAGCAACAATCGAAAGTGCAAGGGCAAAGGTGGTCCGGACAACAACAAGTTCCGCTACCGCGGAGTGCGGCAGCGGAGCTGGGGCAAGTGGGTGGCGGAGATCCGTGAGCCACGTAAGCGCACACGGAAGTGGCTCGGGACCTTCGCCACCGCGGAGGACGCCGCCAAAGCCTACGATCGAGCCGCTATCATTCTCTACGGCTCCAGGGCTCAGCTCAACCTCCAGCCCTCCGGTTCTTCCTCCTCTCAGTCCTCCACGCGCGGCTCTTCTTCCTCATCATCGTCTTCTTCTTCCAGCCAAACCCTAAGACCCCTGCTCCCTCGGCCCTCCGGCTTCCCAGGCTTCAGCTGTAACTTCGCCGCCTCGGCCCATCCTTACGGATTTGTTCCCTACAATTCTGTTGGGGTTTACCCTAACTCCTCCGCACAGATGAGTAATCAGCTGGACAATTTAAATCCACAGATCCAACAGCAAGTTGTGGTGCAGCAACAGTTTCATCATTATCCATTATCATCGGATTGTTGCGGTGACGTCATTAACACCACACCAACCTCGTACCCAAACCCTAGTGTCCATGCTCATCAGCAATACCAAGTACACCAGCAACAGGATTTGAATCAGAATCAGAGCTGTACTTCTTACGAGGATATGAACTCGATTGTTGGGTCCGCGGGTTCGAGTTTGTCTATGTCATCGCAGCCCATGGCGGTTGCACCGGCTGTTTCGGATCCGATGATGATGGCACAAGGCGGACCCATGTCGCCGATGTGGCCGCTGACGAACGAGGAAGAGTGTGCCCAGACTCTGTGGGACTACTACGGTGATCCTTTCTTTTTGGATTTTAAAGGATTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000272 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009755 GO:0009756 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010154 GO:0010182 GO:0010353 GO:0010449 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010896 GO:0016052 GO:0019216 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031930 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0032880 GO:0033993 GO:0034284 GO:0034285 GO:0035266 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044042 GO:0044212 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0050994 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0090207 GO:0090696 GO:0097159 GO:0097305 GO:0097306 GO:0099402 GO:0140110 GO:1901363 GO:1901575 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

329

Amino Acids

36.07

Weight (kDa)

5.8

Isoelectric Point (pI)

56.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 62 - 111 3.9e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40220
fragaria_vesca FvH4_7g24760
malus_domestica MD01G1155400.v1.1 MD07G1224400.v1.1
prunus_persica Prupe.2G253000_v2.0.a1
pyrus_communis pycom01g17270 pycom13g15020
rosa_chinensis RchiOBHm_Chr1g0370631
rosa_laevigata RLG00000027023
rosa_multiflora Rmu_sc0002021.1_g000011
rosa_roxburghii Rroxscaffold_4G00286390
rosa_rugosa Rorug01G0358000
rosa_samantha Rh1AG367500 Rh1BG330800 Rh1CG345000 Rh1DG362300
rosa_wichuraiana Rw1G032340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 666
AccII CGCG 5 cut(s) 192, 284, 391, 393, 803
AccIII TCCGGA 1 cut(s) 166
AclWI GGATC 5 cut(s) 226, 589, 854, 867, 950
AcoI YGGCCR 1 cut(s) 902
AcuI CTGAAG 1 cut(s) 460
AcyI GRCGYC 2 cut(s) 291, 663
AfaI GTAC 3 cut(s) 689, 729, 766
AfiI CCNNNNNNNGG 1 cut(s) 739
AgeI ACCGGT 1 cut(s) 65
AgsI TTSAA 2 cut(s) 74, 748
AjnI CCWGG 2 cut(s) 335, 469
AleI CACNNNNGTG 1 cut(s) 259
AluBI AGCT 5 cut(s) 210, 346, 480, 574, 762
AluI AGCT 5 cut(s) 210, 346, 480, 574, 762
AlwI GGATC 5 cut(s) 226, 589, 854, 867, 950
AlwNI CAGNNNCTG 1 cut(s) 937
Ama87I CYCGRG 1 cut(s) 266
Aor13HI TCCGGA 1 cut(s) 166
AoxI GGCC 3 cut(s) 455, 498, 902
ApeKI GCWGC 3 cut(s) 202, 616, 829
AsiGI ACCGGT 1 cut(s) 65
AspLEI GCGC 2 cut(s) 252, 393
AspS9I GGNCC 6 cut(s) 164, 270, 456, 499, 798, 884
AsuHPI GGTGA 3 cut(s) 20, 671, 965
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 4 cut(s) 164, 270, 798, 884
BaeGI GKGCMC 1 cut(s) 931
BamHI GGATCC 1 cut(s) 859
BanII GRGCYC 1 cut(s) 343
BbsI GAAGAC 2 cut(s) 15, 408
BbvI GCAGC 3 cut(s) 214, 628, 841
BccI CCATC 2 cut(s) 510, 865
BceAI ACGGC 1 cut(s) 346
BciT130I CCWGG 2 cut(s) 337, 471
BfaI CTAG 1 cut(s) 699
BglI GCCNNNNNGGC 2 cut(s) 497, 901
BlpI GCTNAGC 1 cut(s) 342
Bme1390I CCNGG 2 cut(s) 337, 471
Bme18I GGWCC 4 cut(s) 164, 270, 798, 884
BmeT110I CYCGRG 1 cut(s) 266
BmgT120I GGNCC 6 cut(s) 164, 270, 456, 499, 798, 884
BmiI GGNNCC 5 cut(s) 271, 334, 799, 861, 886
BmrFI CCNGG 2 cut(s) 337, 471
BoxI GACNNNNGTC 1 cut(s) 889
BpiI GAAGAC 2 cut(s) 15, 408
BpmI CTGGAG 2 cut(s) 319, 338
Bpu1102I GCTNAGC 1 cut(s) 342
BsaAI YACGTR 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 747
BsaHI GRCGYC 2 cut(s) 291, 663
BsaJI CCNNGG 8 cut(s) 190, 282, 336, 452, 469, 495, 801, 834
BsaWI WCCGGW 3 cut(s) 65, 166, 362
BsaXI ACNNNNNCTCC 4 cut(s) 432, 462, 533, 563
Bsc4I CCNNNNNNNGG 1 cut(s) 739
Bse118I RCCGGY 2 cut(s) 65, 847
Bse8I GATNNNNATC 1 cut(s) 747
BseAI TCCGGA 1 cut(s) 166
BseBI CCWGG 2 cut(s) 337, 471
BseDI CCNNGG 8 cut(s) 190, 282, 336, 452, 469, 495, 801, 834
BseGI GGATG 2 cut(s) 17, 502
BseJI GATNNNNATC 1 cut(s) 747
BseLI CCNNNNNNNGG 1 cut(s) 739
BseMII CTCAG 2 cut(s) 356, 392
BseRI GAGGAG 2 cut(s) 364, 541
BseSI GKGCMC 1 cut(s) 931
BseXI GCAGC 3 cut(s) 214, 628, 841
BseYI CCCAGC 1 cut(s) 210
BsgI GTGCAG 1 cut(s) 635
Bsh1236I CGCG 5 cut(s) 192, 284, 391, 393, 803
Bsh1285I CGRYCG 1 cut(s) 310
BshFI GGCC 3 cut(s) 457, 500, 904
BshTI ACCGGT 1 cut(s) 65
BsiEI CGRYCG 1 cut(s) 310
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 5 cut(s) 66, 167, 363, 462, 848
BslFI GGGAC 2 cut(s) 283, 956
BslI CCNNNNNNNGG 1 cut(s) 739
BsmFI GGGAC 2 cut(s) 283, 956
BsnI GGCC 3 cut(s) 457, 500, 904
BsoBI CYCGRG 1 cut(s) 266
Bsp1286I GDGCHC 2 cut(s) 343, 931
Bsp13I TCCGGA 1 cut(s) 166
Bsp143I GATC 5 cut(s) 231, 307, 594, 859, 955
Bsp1720I GCTNAGC 1 cut(s) 342
Bsp19I CCATGG 1 cut(s) 834
BspANI GGCC 3 cut(s) 457, 500, 904
BspCNI CTCAG 2 cut(s) 355, 391
BspEI TCCGGA 1 cut(s) 166
BspFNI CGCG 5 cut(s) 192, 284, 391, 393, 803
BspLI GGNNCC 5 cut(s) 271, 334, 799, 861, 886
BspPI GGATC 5 cut(s) 226, 589, 854, 867, 950
BspQI GCTCTTC 1 cut(s) 403
BsrFI RCCGGY 2 cut(s) 65, 847
BssAI RCCGGY 2 cut(s) 65, 847
BssECI CCNNGG 8 cut(s) 190, 282, 336, 452, 469, 495, 801, 834
BssMI GATC 5 cut(s) 231, 307, 594, 859, 955
BssNI GRCGYC 2 cut(s) 291, 663
BssT1I CCWWGG 1 cut(s) 834
Bst2UI CCWGG 2 cut(s) 337, 471
Bst4CI ACNGT 2 cut(s) 624, 953
Bst6I CTCTTC 2 cut(s) 403, 915
BstACI GRCGYC 2 cut(s) 291, 663
BstBAI YACGTR 1 cut(s) 245
BstDEI CTNAG 3 cut(s) 342, 378, 437
BstDSI CCRYGG 4 cut(s) 190, 282, 801, 834
BstF5I GGATG 2 cut(s) 17, 502
BstFNI CGCG 5 cut(s) 192, 284, 391, 393, 803
BstHHI GCGC 2 cut(s) 252, 393
BstKTI GATC 5 cut(s) 234, 310, 597, 862, 958
BstMBI GATC 5 cut(s) 231, 307, 594, 859, 955
BstMCI CGRYCG 1 cut(s) 310
BstMWI GCNNNNNNNGC 7 cut(s) 247, 290, 299, 454, 471, 497, 901
BstNI CCWGG 2 cut(s) 337, 471
BstPAI GACNNNNGTC 1 cut(s) 889
BstSCI CCNGG 2 cut(s) 335, 469
BstSLI GKGCMC 1 cut(s) 931
BstUI CGCG 5 cut(s) 192, 284, 391, 393, 803
BstV1I GCAGC 3 cut(s) 214, 628, 841
BstV2I GAAGAC 2 cut(s) 15, 408
BstX2I RGATCY 3 cut(s) 231, 594, 859
BstYI RGATCY 3 cut(s) 231, 594, 859
BsuRI GGCC 3 cut(s) 457, 500, 904
BtgI CCRYGG 4 cut(s) 190, 282, 801, 834
BtgZI GCGATG 1 cut(s) 810
BtsCI GGATG 2 cut(s) 17, 502
CaiI CAGNNNCTG 1 cut(s) 937
CfoI GCGC 2 cut(s) 252, 393
Cfr10I RCCGGY 2 cut(s) 65, 847
Cfr13I GGNCC 6 cut(s) 164, 270, 456, 499, 798, 884
Cfr42I CCGCGG 3 cut(s) 193, 285, 804
CseI GACGC 1 cut(s) 299
Csp6I GTAC 3 cut(s) 688, 728, 765
CspAI ACCGGT 1 cut(s) 65
CviAII CATG 3 cut(s) 707, 835, 889
CviQI GTAC 3 cut(s) 688, 728, 765
DdeI CTNAG 3 cut(s) 342, 378, 437
DpnI GATC 5 cut(s) 233, 309, 596, 861, 957
DpnII GATC 5 cut(s) 231, 307, 594, 859, 955
DraI TTTAAA 2 cut(s) 585, 976
EaeI YGGCCR 1 cut(s) 902
Eam1104I CTCTTC 2 cut(s) 403, 915
EarI CTCTTC 2 cut(s) 403, 915
EciI GGCGGA 2 cut(s) 242, 897
Eco130I CCWWGG 1 cut(s) 834
Eco24I GRGCYC 1 cut(s) 343
Eco47I GGWCC 4 cut(s) 164, 270, 798, 884
Eco57I CTGAAG 1 cut(s) 460
Eco88I CYCGRG 1 cut(s) 266
EcoO109I RGGNCCY 1 cut(s) 270
EcoRII CCWGG 2 cut(s) 335, 469
EcoT14I CCWWGG 1 cut(s) 834
EcoT38I GRGCYC 1 cut(s) 343
ErhI CCWWGG 1 cut(s) 834
FaeI CATG 3 cut(s) 710, 838, 892
FaiI YATR 5 cut(s) 708, 782, 821, 836, 890
FaqI GGGAC 2 cut(s) 283, 956
FatI CATG 3 cut(s) 706, 834, 888
FauI CCCGC 1 cut(s) 796
FokI GGATG 2 cut(s) 4, 489
FriOI GRGCYC 1 cut(s) 343
FspBI CTAG 1 cut(s) 699
GlaI GCGC 2 cut(s) 251, 392
GsaI CCCAGC 1 cut(s) 214
GsuI CTGGAG 2 cut(s) 319, 338
HaeIII GGCC 3 cut(s) 457, 500, 904
HapII CCGG 5 cut(s) 66, 167, 363, 462, 848
HgaI GACGC 1 cut(s) 299
HhaI GCGC 2 cut(s) 252, 393
Hin1I GRCGYC 2 cut(s) 291, 663
Hin1II CATG 3 cut(s) 710, 838, 892
Hin6I GCGC 2 cut(s) 250, 391
HinP1I GCGC 2 cut(s) 250, 391
HinfI GANTC 3 cut(s) 748, 754, 934
HpaII CCGG 5 cut(s) 66, 167, 363, 462, 848
HphI GGTGA 3 cut(s) 20, 671, 965
Hpy166II GTNNAC 2 cut(s) 541, 730
Hpy188I TCNGA 5 cut(s) 649, 753, 759, 859, 864
Hpy188III TCNNGA 2 cut(s) 167, 268
Hpy8I GTNNAC 2 cut(s) 541, 730
HpyAV CCTTC 1 cut(s) 283
HpyCH4III ACNGT 2 cut(s) 624, 953
HpyCH4IV ACGT 2 cut(s) 244, 663
HpyCH4V TGCA 3 cut(s) 150, 616, 845
HpyF10VI GCNNNNNNNGC 7 cut(s) 247, 290, 299, 454, 471, 497, 901
HpyF3I CTNAG 3 cut(s) 342, 378, 437
HpySE526I ACGT 2 cut(s) 244, 663
Hsp92I GRCGYC 2 cut(s) 291, 663
Hsp92II CATG 3 cut(s) 710, 838, 892
HspAI GCGC 2 cut(s) 250, 391
Kpn2I TCCGGA 1 cut(s) 166
KspI CCGCGG 3 cut(s) 193, 285, 804
Kzo9I GATC 5 cut(s) 231, 307, 594, 859, 955
LguI GCTCTTC 1 cut(s) 403
LmnI GCTCC 3 cut(s) 207, 338, 453
Lsp1109I GCAGC 3 cut(s) 214, 628, 841
MaeI CTAG 1 cut(s) 699
MaeII ACGT 2 cut(s) 244, 663
MaeIII GTNAC 2 cut(s) 482, 659
MalI GATC 5 cut(s) 233, 309, 596, 861, 957
MboI GATC 5 cut(s) 231, 307, 594, 859, 955
MboII GAAGA 8 cut(s) 20, 360, 390, 393, 408, 411, 414, 932
MflI RGATCY 3 cut(s) 231, 594, 859
MhlI GDGCHC 2 cut(s) 343, 931
MluCI AATT 2 cut(s) 526, 580
MlyI GAGTC 1 cut(s) 928
MmeI TCCRAC 2 cut(s) 61, 622
MroI TCCGGA 1 cut(s) 166
MseI TTAA 3 cut(s) 584, 669, 975
MslI CAYNNNNRTG 1 cut(s) 259
MspA1I CMGCKG 7 cut(s) 192, 205, 284, 480, 574, 803, 907
MspI CCGG 5 cut(s) 66, 167, 363, 462, 848
MspR9I CCNGG 2 cut(s) 337, 471
MvaI CCWGG 2 cut(s) 337, 471
MvnI CGCG 5 cut(s) 192, 284, 391, 393, 803
MwoI GCNNNNNNNGC 7 cut(s) 247, 290, 299, 454, 471, 497, 901
NcoI CCATGG 1 cut(s) 834
NdeII GATC 5 cut(s) 231, 307, 594, 859, 955
NlaIII CATG 3 cut(s) 710, 838, 892
NlaIV GGNNCC 5 cut(s) 271, 334, 799, 861, 886
NmeAIII GCCGAG 2 cut(s) 433, 476
NmuCI GTSAC 1 cut(s) 659
OliI CACNNNNGTG 1 cut(s) 259
PciSI GCTCTTC 1 cut(s) 403
PfeI GAWTC 2 cut(s) 748, 754
PinAI ACCGGT 1 cut(s) 65
Ple19I CGATCG 1 cut(s) 310
PleI GAGTC 1 cut(s) 928
PpsI GAGTC 1 cut(s) 928
Ppu21I YACGTR 1 cut(s) 245
PpuMI RGGWCCY 1 cut(s) 270
PshAI GACNNNNGTC 1 cut(s) 889
Psp5II RGGWCCY 1 cut(s) 270
Psp6I CCWGG 2 cut(s) 335, 469
PspFI CCCAGC 1 cut(s) 210
PspGI CCWGG 2 cut(s) 335, 469
PspN4I GGNNCC 5 cut(s) 271, 334, 799, 861, 886
PspPI GGNCC 6 cut(s) 164, 270, 456, 499, 798, 884
PspPPI RGGWCCY 1 cut(s) 270
PstNI CAGNNNCTG 1 cut(s) 937
PsuI RGATCY 3 cut(s) 231, 594, 859
PvuI CGATCG 1 cut(s) 310
PvuII CAGCTG 2 cut(s) 480, 574
RsaI GTAC 3 cut(s) 689, 729, 766
RsaNI GTAC 3 cut(s) 688, 728, 765
RseI CAYNNNNRTG 1 cut(s) 259
SacII CCGCGG 3 cut(s) 193, 285, 804
SapI GCTCTTC 1 cut(s) 403
SaqAI TTAA 3 cut(s) 584, 669, 975
Sau3AI GATC 5 cut(s) 231, 307, 594, 859, 955
Sau96I GGNCC 6 cut(s) 164, 270, 456, 499, 798, 884
SchI GAGTC 1 cut(s) 928
ScrFI CCNGG 2 cut(s) 337, 471
SduI GDGCHC 2 cut(s) 343, 931
Sfr303I CCGCGG 3 cut(s) 193, 285, 804
SgrBI CCGCGG 3 cut(s) 193, 285, 804
SinI GGWCC 4 cut(s) 164, 270, 798, 884
SmiI ATTTAAAT 1 cut(s) 585
SmiMI CAYNNNNRTG 1 cut(s) 259
Sse9I AATT 2 cut(s) 526, 580
SspMI CTAG 1 cut(s) 699
StyD4I CCNGG 2 cut(s) 335, 469
StyI CCWWGG 1 cut(s) 834
SwaI ATTTAAAT 1 cut(s) 585
TaaI ACNGT 2 cut(s) 624, 953
TaiI ACGT 2 cut(s) 247, 666
TaqI TCGA 4 cut(s) 142, 310, 788, 809
TasI AATT 2 cut(s) 526, 580
TatI WGTACW 2 cut(s) 727, 764
TauI GCSGC 8 cut(s) 86, 89, 202, 296, 317, 396, 494, 907
TfiI GAWTC 2 cut(s) 748, 754
Tru1I TTAA 3 cut(s) 584, 669, 975
Tru9I TTAA 3 cut(s) 584, 669, 975
TseFI GTSAC 1 cut(s) 659
TseI GCWGC 3 cut(s) 202, 616, 829
Tsp45I GTSAC 1 cut(s) 659
TspDTI ATGAA 2 cut(s) 617, 797
TspGWI ACGGA 3 cut(s) 224, 271, 525
VpaK11BI GGWCC 4 cut(s) 164, 270, 798, 884
XspI CTAG 1 cut(s) 699
ZraI GACGTC 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.