pycom13g15020

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0014271
Physical Location & Seq
Forward (+)
10911492 .. 10911986
495 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g15020.1

Sequence Viewer

Length: 495 bp
ATGCGCAAGCGGAGCTGGGGCAAATGGGTGGCTAAGATCCGTGAGTCGCGTAAGCGTACGCGCAAGTGGCTTAGGACCTTCGCCACTGCCAAGGATGCTACCTGCACCTACAACCAGGCCACCATCATCCTTTACGGTTCCAGGGCCCAGCTCAACCTCCAGCCCTCCGGTTCCTCGTCCCAGAACTCCACGCGGGGTTCTTCTTCTTTCTCTTCATCTTCCACCTCTTTGAGTCTACCTTTGTCTGGGTTTGAGTCTACCTGCAGAAAGCTACTTTCGTCTGGGTTTGAGGCTTCATTCGTAATACCTTGGTCTGGGTTTGAGTCTTCATCCGTAGTACCTTGGTCTTGGTCTGGGTTTGAGTCTTCATCCGTAGTACCTTGGTCTGGGTTTGAGTTTGTGAGAAATAGAGGGAATTGTTGTTATTTTTCAAAGAAAGAAGAGGGAATTGAGTCTGCAACTTCCCTTGAAGTTCGCAAGAAGCTTTTGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000272 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009755 GO:0009756 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010154 GO:0010182 GO:0010353 GO:0010449 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010896 GO:0016052 GO:0019216 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031930 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0032880 GO:0033993 GO:0034284 GO:0034285 GO:0035266 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044042 GO:0044212 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0050994 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0090207 GO:0090696 GO:0097159 GO:0097305 GO:0097306 GO:0099402 GO:0140110 GO:1901363 GO:1901575 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

165

Amino Acids

18.33

Weight (kDa)

10.14

Isoelectric Point (pI)

51.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40220
fragaria_vesca FvH4_7g24760
malus_domestica MD01G1155400.v1.1 MD07G1224400.v1.1
prunus_persica Prupe.2G253000_v2.0.a1
pyrus_communis pycom01g17270 pycom13g15020
rosa_chinensis RchiOBHm_Chr1g0370631
rosa_laevigata RLG00000027023
rosa_multiflora Rmu_sc0002021.1_g000011
rosa_roxburghii Rroxscaffold_4G00286390
rosa_rugosa Rorug01G0358000
rosa_samantha Rh1AG367500 Rh1BG330800 Rh1CG345000 Rh1DG362300
rosa_wichuraiana Rw1G032340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 5
Acc36I ACCTGC 2 cut(s) 110, 269
AccI GTMKAC 2 cut(s) 235, 257
AccII CGCG 3 cut(s) 49, 61, 193
AciI CCGC 2 cut(s) 10, 193
AclWI GGATC 1 cut(s) 31
AfaI GTAC 3 cut(s) 58, 339, 378
AfiI CCNNNNNNNGG 3 cut(s) 245, 314, 386
AgsI TTSAA 2 cut(s) 432, 470
AjnI CCWGG 2 cut(s) 114, 140
AluBI AGCT 4 cut(s) 15, 151, 271, 484
AluI AGCT 4 cut(s) 15, 151, 271, 484
AlwI GGATC 1 cut(s) 31
AoxI GGCC 2 cut(s) 117, 144
ApaI GGGCCC 1 cut(s) 148
AspLEI GCGC 2 cut(s) 6, 63
AspS9I GGNCC 3 cut(s) 75, 144, 145
AvaII GGWCC 1 cut(s) 75
BaeGI GKGCMC 1 cut(s) 148
BanII GRGCYC 1 cut(s) 148
BbsI GAAGAC 2 cut(s) 318, 357
BccI CCATC 1 cut(s) 131
BciT130I CCWGG 2 cut(s) 116, 142
BfmI CTRYAG 1 cut(s) 262
BfuAI ACCTGC 2 cut(s) 110, 269
Bme1390I CCNGG 2 cut(s) 116, 142
Bme18I GGWCC 1 cut(s) 75
BmgT120I GGNCC 3 cut(s) 75, 144, 145
BmiI GGNNCC 3 cut(s) 139, 146, 172
BmrFI CCNGG 2 cut(s) 116, 142
BmsI GCATC 1 cut(s) 85
BpiI GAAGAC 2 cut(s) 318, 357
BpmI CTGGAG 1 cut(s) 143
Bpu10I CCTNAGC 1 cut(s) 71
BsaJI CCNNGG 5 cut(s) 90, 141, 308, 341, 380
BsaWI WCCGGW 1 cut(s) 167
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 314, 386
BseBI CCWGG 2 cut(s) 116, 142
BseDI CCNNGG 5 cut(s) 90, 141, 308, 341, 380
BseGI GGATG 4 cut(s) 100, 126, 329, 368
BseLI CCNNNNNNNGG 3 cut(s) 245, 314, 386
BseSI GKGCMC 1 cut(s) 148
BseYI CCCAGC 2 cut(s) 15, 147
BsgI GTGCAG 1 cut(s) 88
Bsh1236I CGCG 3 cut(s) 49, 61, 193
BshFI GGCC 2 cut(s) 119, 146
BsiSI CCGG 1 cut(s) 168
BsiWI CGTACG 1 cut(s) 56
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 3 cut(s) 245, 314, 386
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 2 cut(s) 119, 146
Bsp120I GGGCCC 1 cut(s) 144
Bsp1286I GDGCHC 1 cut(s) 148
Bsp143I GATC 1 cut(s) 36
BspACI CCGC 2 cut(s) 10, 193
BspANI GGCC 2 cut(s) 119, 146
BspFNI CGCG 3 cut(s) 49, 61, 193
BspLI GGNNCC 3 cut(s) 139, 146, 172
BspMAI CTGCAG 1 cut(s) 266
BspMI ACCTGC 2 cut(s) 110, 269
BspPI GGATC 1 cut(s) 31
BssECI CCNNGG 5 cut(s) 90, 141, 308, 341, 380
BssMI GATC 1 cut(s) 36
BssT1I CCWWGG 4 cut(s) 90, 308, 341, 380
Bst2UI CCWGG 2 cut(s) 116, 142
Bst4CI ACNGT 1 cut(s) 137
Bst6I CTCTTC 2 cut(s) 217, 435
BstC8I GCNNGC 1 cut(s) 8
BstDEI CTNAG 2 cut(s) 33, 71
BstF5I GGATG 4 cut(s) 100, 126, 329, 368
BstFNI CGCG 3 cut(s) 49, 61, 193
BstHHI GCGC 2 cut(s) 6, 63
BstKTI GATC 1 cut(s) 39
BstMBI GATC 1 cut(s) 36
BstMWI GCNNNNNNNGC 3 cut(s) 12, 67, 95
BstNI CCWGG 2 cut(s) 116, 142
BstSCI CCNGG 2 cut(s) 114, 140
BstSFI CTRYAG 1 cut(s) 262
BstSLI GKGCMC 1 cut(s) 148
BstUI CGCG 3 cut(s) 49, 61, 193
BstV2I GAAGAC 2 cut(s) 318, 357
BstX2I RGATCY 1 cut(s) 36
BstYI RGATCY 1 cut(s) 36
BsuRI GGCC 2 cut(s) 119, 146
BtsCI GGATG 4 cut(s) 100, 126, 329, 368
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
BveI ACCTGC 2 cut(s) 110, 269
Cac8I GCNNGC 1 cut(s) 8
CfoI GCGC 2 cut(s) 6, 63
Cfr13I GGNCC 3 cut(s) 75, 144, 145
Csp6I GTAC 3 cut(s) 57, 338, 377
CviQI GTAC 3 cut(s) 57, 338, 377
DdeI CTNAG 2 cut(s) 33, 71
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
Eam1104I CTCTTC 2 cut(s) 217, 435
EarI CTCTTC 2 cut(s) 217, 435
Eco130I CCWWGG 4 cut(s) 90, 308, 341, 380
Eco24I GRGCYC 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 75
EcoO109I RGGNCCY 2 cut(s) 75, 144
EcoRII CCWGG 2 cut(s) 114, 140
EcoT14I CCWWGG 4 cut(s) 90, 308, 341, 380
EcoT38I GRGCYC 1 cut(s) 148
ErhI CCWWGG 4 cut(s) 90, 308, 341, 380
FaqI GGGAC 1 cut(s) 163
FauI CCCGC 1 cut(s) 186
FblI GTMKAC 2 cut(s) 235, 257
FokI GGATG 4 cut(s) 107, 113, 316, 355
FriOI GRGCYC 1 cut(s) 148
FspI TGCGCA 1 cut(s) 5
GlaI GCGC 2 cut(s) 5, 62
GsaI CCCAGC 2 cut(s) 19, 151
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 2 cut(s) 119, 146
HapII CCGG 1 cut(s) 168
HhaI GCGC 2 cut(s) 6, 63
Hin6I GCGC 2 cut(s) 4, 61
HinP1I GCGC 2 cut(s) 4, 61
HindIII AAGCTT 1 cut(s) 482
HinfI GANTC 6 cut(s) 44, 232, 254, 323, 362, 452
HpaII CCGG 1 cut(s) 168
Hpy166II GTNNAC 2 cut(s) 236, 258
Hpy8I GTNNAC 2 cut(s) 236, 258
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 1 cut(s) 137
HpyCH4V TGCA 3 cut(s) 105, 264, 458
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 67, 95
HpyF3I CTNAG 2 cut(s) 33, 71
HspAI GCGC 2 cut(s) 4, 61
Kzo9I GATC 1 cut(s) 36
LmnI GCTCC 1 cut(s) 12
LweI GCATC 1 cut(s) 85
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 7 cut(s) 192, 195, 204, 210, 318, 357, 452
MflI RGATCY 1 cut(s) 36
MhlI GDGCHC 1 cut(s) 148
MluCI AATT 2 cut(s) 415, 447
MlyI GAGTC 6 cut(s) 53, 241, 263, 332, 371, 461
MnlI CCTC 7 cut(s) 167, 175, 184, 235, 283, 404, 436
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 2 cut(s) 116, 142
MvaI CCWGG 2 cut(s) 116, 142
MvnI CGCG 3 cut(s) 49, 61, 193
MwoI GCNNNNNNNGC 3 cut(s) 12, 67, 95
NdeII GATC 1 cut(s) 36
NlaIV GGNNCC 3 cut(s) 139, 146, 172
NsbI TGCGCA 1 cut(s) 5
Pfl23II CGTACG 1 cut(s) 56
PleI GAGTC 6 cut(s) 52, 240, 262, 331, 370, 460
PpsI GAGTC 6 cut(s) 52, 240, 262, 331, 370, 460
PpuMI RGGWCCY 1 cut(s) 75
Psp5II RGGWCCY 1 cut(s) 75
Psp6I CCWGG 2 cut(s) 114, 140
PspFI CCCAGC 2 cut(s) 15, 147
PspGI CCWGG 2 cut(s) 114, 140
PspLI CGTACG 1 cut(s) 56
PspN4I GGNNCC 3 cut(s) 139, 146, 172
PspOMI GGGCCC 1 cut(s) 144
PspPI GGNCC 3 cut(s) 75, 144, 145
PspPPI RGGWCCY 1 cut(s) 75
PstI CTGCAG 1 cut(s) 266
PsuI RGATCY 1 cut(s) 36
RsaI GTAC 3 cut(s) 58, 339, 378
RsaNI GTAC 3 cut(s) 57, 338, 377
Sau3AI GATC 1 cut(s) 36
Sau96I GGNCC 3 cut(s) 75, 144, 145
SchI GAGTC 6 cut(s) 53, 241, 263, 332, 371, 461
ScrFI CCNGG 2 cut(s) 116, 142
SduI GDGCHC 1 cut(s) 148
SfaNI GCATC 1 cut(s) 85
SfcI CTRYAG 1 cut(s) 262
SinI GGWCC 1 cut(s) 75
Sse9I AATT 2 cut(s) 415, 447
SsiI CCGC 2 cut(s) 10, 193
StyD4I CCNGG 2 cut(s) 114, 140
StyI CCWWGG 4 cut(s) 90, 308, 341, 380
TaaI ACNGT 1 cut(s) 137
TasI AATT 2 cut(s) 415, 447
TscAI CASTG 1 cut(s) 91
TspDTI ATGAA 4 cut(s) 204, 285, 318, 357
TspGWI ACGGA 3 cut(s) 29, 322, 361
TspRI CASTG 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 75
XmiI GTMKAC 2 cut(s) 235, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.