Rmu_sc0002021.1_g000011

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002021.1
OG0014271
Physical Location & Seq
Forward (+)
41207 .. 42205
999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002021.1_g000011.1.cds

Sequence Viewer

Length: 999 bp
atggacgaagacgacacatccccacctcaccctctccaacgcaacaacgacaacgaaaccggtgttgaaaccaccaccgccgcaactaccacaccaacaacgaatacaacagaagccaaagacaacagcaacaatcgaaagtgcaagggcaaaggtggtccggacaacaacaagttccgctaccgcggagtgcggcagcggagctggggcaagtgggtggcggagatccgtgagccacgtaagcgcacacggaagtggctcgggaccttcgccaccgcggaggacgccgccaaagcctacgaccgagccgctatcattctctacggctccagggctcagctcaacctccagccctccggttcttcctcctctcagtcctccacgcgcggctcttcttcctcatcatcgtcttcttcttccagccaaaccctaagacccctgctccctcggccctccggctacccaggcttcagctgtaacttcgccgcctcggcccatccttacggatttgttgcctacaattctgttggggtttaccctaactcctccgcacagatgagtaatcagctggacaatttaaatccgcagatccaacagcaagttgtggtgcagcaacagcagcagcaacagtttcatcattatccattatcatcggatggttgcggtgacgtcattaacaccacaccaacctcgtacccaaaccctagtgtccatgctcatcagcaataccaagtacaccagcagcagcaggatttgaatcagaatcagagttgtacttcttacgaggatatgaactcgattgttgggtccgcgggttcgagtttgtctatgtcatcgcagcccatggtggttgcaccggctgtttcggatccgatgatgatggcacaaggcggacccatgtcgccgatgtggccgctgacgaacgaggaagagtgtgcccagagtctgtgggactactacggtgatcctttcttttcggattttaaaggatttgattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000272 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009755 GO:0009756 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010154 GO:0010182 GO:0010353 GO:0010449 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010896 GO:0016052 GO:0019216 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031930 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0032880 GO:0033993 GO:0034284 GO:0034285 GO:0035266 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044042 GO:0044212 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0050994 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0090207 GO:0090696 GO:0097159 GO:0097305 GO:0097306 GO:0099402 GO:0140110 GO:1901363 GO:1901575 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

332

Amino Acids

36.44

Weight (kDa)

5.97

Isoelectric Point (pI)

58.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40220
fragaria_vesca FvH4_7g24760
malus_domestica MD01G1155400.v1.1 MD07G1224400.v1.1
prunus_persica Prupe.2G253000_v2.0.a1
pyrus_communis pycom01g17270 pycom13g15020
rosa_chinensis RchiOBHm_Chr1g0370631
rosa_laevigata RLG00000027023
rosa_multiflora Rmu_sc0002021.1_g000011
rosa_roxburghii Rroxscaffold_4G00286390
rosa_rugosa Rorug01G0358000
rosa_samantha Rh1AG367500 Rh1BG330800 Rh1CG345000 Rh1DG362300
rosa_wichuraiana Rw1G032340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 672
AccII CGCG 5 cut(s) 186, 278, 385, 387, 812
AccIII TCCGGA 1 cut(s) 160
AclWI GGATC 5 cut(s) 220, 583, 863, 876, 959
AcoI YGGCCR 1 cut(s) 911
AcuI CTGAAG 1 cut(s) 454
AcyI GRCGYC 2 cut(s) 285, 669
AfaI GTAC 3 cut(s) 695, 735, 775
AgeI ACCGGT 1 cut(s) 59
AgsI TTSAA 2 cut(s) 68, 757
AjnI CCWGG 2 cut(s) 329, 463
AleI CACNNNNGTG 1 cut(s) 253
AluBI AGCT 4 cut(s) 204, 340, 474, 568
AluI AGCT 4 cut(s) 204, 340, 474, 568
AlwI GGATC 5 cut(s) 220, 583, 863, 876, 959
AlwNI CAGNNNCTG 1 cut(s) 946
Ama87I CYCGRG 1 cut(s) 260
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 3 cut(s) 449, 492, 911
ApeKI GCWGC 7 cut(s) 196, 610, 619, 622, 742, 745, 838
AsiGI ACCGGT 1 cut(s) 59
AspLEI GCGC 2 cut(s) 246, 387
AspS9I GGNCC 6 cut(s) 158, 264, 450, 493, 807, 893
AsuHPI GGTGA 3 cut(s) 20, 677, 974
AvaI CYCGRG 1 cut(s) 260
AvaII GGWCC 4 cut(s) 158, 264, 807, 893
BaeGI GKGCMC 1 cut(s) 940
BamHI GGATCC 1 cut(s) 868
BanII GRGCYC 1 cut(s) 337
BbsI GAAGAC 2 cut(s) 15, 402
BbvI GCAGC 7 cut(s) 208, 622, 631, 634, 754, 757, 850
BccI CCATC 3 cut(s) 504, 650, 874
BceAI ACGGC 1 cut(s) 340
BciT130I CCWGG 2 cut(s) 331, 465
BfaI CTAG 1 cut(s) 705
BglI GCCNNNNNGGC 2 cut(s) 491, 910
BlpI GCTNAGC 1 cut(s) 336
Bme1390I CCNGG 2 cut(s) 331, 465
Bme18I GGWCC 4 cut(s) 158, 264, 807, 893
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 6 cut(s) 158, 264, 450, 493, 807, 893
BmiI GGNNCC 5 cut(s) 265, 328, 808, 870, 895
BmrFI CCNGG 2 cut(s) 331, 465
BoxI GACNNNNGTC 1 cut(s) 898
BpiI GAAGAC 2 cut(s) 15, 402
BpmI CTGGAG 2 cut(s) 313, 332
Bpu1102I GCTNAGC 1 cut(s) 336
BsaAI YACGTR 1 cut(s) 239
BsaBI GATNNNNATC 1 cut(s) 756
BsaHI GRCGYC 2 cut(s) 285, 669
BsaJI CCNNGG 8 cut(s) 184, 276, 330, 446, 463, 489, 810, 843
BsaWI WCCGGW 3 cut(s) 59, 160, 356
BsaXI ACNNNNNCTCC 4 cut(s) 426, 456, 527, 557
Bse118I RCCGGY 2 cut(s) 59, 856
Bse8I GATNNNNATC 1 cut(s) 756
BseAI TCCGGA 1 cut(s) 160
BseBI CCWGG 2 cut(s) 331, 465
BseDI CCNNGG 8 cut(s) 184, 276, 330, 446, 463, 489, 810, 843
BseGI GGATG 3 cut(s) 17, 496, 661
BseJI GATNNNNATC 1 cut(s) 756
BseMII CTCAG 2 cut(s) 350, 386
BseRI GAGGAG 2 cut(s) 358, 535
BseSI GKGCMC 1 cut(s) 940
BseXI GCAGC 7 cut(s) 208, 622, 631, 634, 754, 757, 850
BseYI CCCAGC 1 cut(s) 204
BsgI GTGCAG 1 cut(s) 629
Bsh1236I CGCG 5 cut(s) 186, 278, 385, 387, 812
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 3 cut(s) 451, 494, 913
BshTI ACCGGT 1 cut(s) 59
BsiEI CGRYCG 1 cut(s) 304
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 5 cut(s) 60, 161, 357, 456, 857
BslFI GGGAC 2 cut(s) 277, 965
BsmFI GGGAC 2 cut(s) 277, 965
BsnI GGCC 3 cut(s) 451, 494, 913
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 2 cut(s) 337, 940
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 4 cut(s) 225, 588, 868, 964
Bsp1720I GCTNAGC 1 cut(s) 336
Bsp19I CCATGG 1 cut(s) 843
BspANI GGCC 3 cut(s) 451, 494, 913
BspCNI CTCAG 2 cut(s) 349, 385
BspEI TCCGGA 1 cut(s) 160
BspFNI CGCG 5 cut(s) 186, 278, 385, 387, 812
BspLI GGNNCC 5 cut(s) 265, 328, 808, 870, 895
BspPI GGATC 5 cut(s) 220, 583, 863, 876, 959
BspQI GCTCTTC 1 cut(s) 397
BsrFI RCCGGY 2 cut(s) 59, 856
BssAI RCCGGY 2 cut(s) 59, 856
BssECI CCNNGG 8 cut(s) 184, 276, 330, 446, 463, 489, 810, 843
BssMI GATC 4 cut(s) 225, 588, 868, 964
BssNI GRCGYC 2 cut(s) 285, 669
BssT1I CCWWGG 1 cut(s) 843
Bst2UI CCWGG 2 cut(s) 331, 465
Bst4CI ACNGT 2 cut(s) 630, 962
Bst6I CTCTTC 2 cut(s) 397, 924
BstACI GRCGYC 2 cut(s) 285, 669
BstBAI YACGTR 1 cut(s) 239
BstDEI CTNAG 3 cut(s) 336, 372, 431
BstDSI CCRYGG 4 cut(s) 184, 276, 810, 843
BstF5I GGATG 3 cut(s) 17, 496, 661
BstFNI CGCG 5 cut(s) 186, 278, 385, 387, 812
BstHHI GCGC 2 cut(s) 246, 387
BstKTI GATC 4 cut(s) 228, 591, 871, 967
BstMBI GATC 4 cut(s) 225, 588, 868, 964
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 9 cut(s) 241, 284, 293, 448, 465, 491, 616, 619, 910
BstNI CCWGG 2 cut(s) 331, 465
BstPAI GACNNNNGTC 1 cut(s) 898
BstSCI CCNGG 2 cut(s) 329, 463
BstSLI GKGCMC 1 cut(s) 940
BstUI CGCG 5 cut(s) 186, 278, 385, 387, 812
BstV1I GCAGC 7 cut(s) 208, 622, 631, 634, 754, 757, 850
BstV2I GAAGAC 2 cut(s) 15, 402
BstX2I RGATCY 3 cut(s) 225, 588, 868
BstYI RGATCY 3 cut(s) 225, 588, 868
BsuRI GGCC 3 cut(s) 451, 494, 913
BtgI CCRYGG 4 cut(s) 184, 276, 810, 843
BtgZI GCGATG 1 cut(s) 819
BtsCI GGATG 3 cut(s) 17, 496, 661
CaiI CAGNNNCTG 1 cut(s) 946
CfoI GCGC 2 cut(s) 246, 387
Cfr10I RCCGGY 2 cut(s) 59, 856
Cfr13I GGNCC 6 cut(s) 158, 264, 450, 493, 807, 893
Cfr42I CCGCGG 3 cut(s) 187, 279, 813
CseI GACGC 1 cut(s) 293
Csp6I GTAC 3 cut(s) 694, 734, 774
CspAI ACCGGT 1 cut(s) 59
CviAII CATG 3 cut(s) 713, 844, 898
CviQI GTAC 3 cut(s) 694, 734, 774
DdeI CTNAG 3 cut(s) 336, 372, 431
DpnI GATC 4 cut(s) 227, 590, 870, 966
DpnII GATC 4 cut(s) 225, 588, 868, 964
DraI TTTAAA 2 cut(s) 579, 985
EaeI YGGCCR 1 cut(s) 911
Eam1104I CTCTTC 2 cut(s) 397, 924
EarI CTCTTC 2 cut(s) 397, 924
EciI GGCGGA 2 cut(s) 236, 906
Eco130I CCWWGG 1 cut(s) 843
Eco24I GRGCYC 1 cut(s) 337
Eco47I GGWCC 4 cut(s) 158, 264, 807, 893
Eco57I CTGAAG 1 cut(s) 454
Eco88I CYCGRG 1 cut(s) 260
EcoO109I RGGNCCY 1 cut(s) 264
EcoRII CCWGG 2 cut(s) 329, 463
EcoT14I CCWWGG 1 cut(s) 843
EcoT38I GRGCYC 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 843
FaeI CATG 3 cut(s) 716, 847, 901
FaiI YATR 5 cut(s) 714, 791, 830, 845, 899
FaqI GGGAC 2 cut(s) 277, 965
FatI CATG 3 cut(s) 712, 843, 897
FauI CCCGC 1 cut(s) 805
FokI GGATG 3 cut(s) 4, 483, 668
FriOI GRGCYC 1 cut(s) 337
FspBI CTAG 1 cut(s) 705
GlaI GCGC 2 cut(s) 245, 386
GsaI CCCAGC 1 cut(s) 208
GsuI CTGGAG 2 cut(s) 313, 332
HaeIII GGCC 3 cut(s) 451, 494, 913
HapII CCGG 5 cut(s) 60, 161, 357, 456, 857
HgaI GACGC 1 cut(s) 293
HhaI GCGC 2 cut(s) 246, 387
Hin1I GRCGYC 2 cut(s) 285, 669
Hin1II CATG 3 cut(s) 716, 847, 901
Hin6I GCGC 2 cut(s) 244, 385
HinP1I GCGC 2 cut(s) 244, 385
HinfI GANTC 3 cut(s) 757, 763, 943
HpaII CCGG 5 cut(s) 60, 161, 357, 456, 857
HphI GGTGA 3 cut(s) 20, 677, 974
Hpy166II GTNNAC 2 cut(s) 535, 736
Hpy188I TCNGA 6 cut(s) 655, 762, 768, 868, 873, 979
Hpy188III TCNNGA 2 cut(s) 161, 262
Hpy8I GTNNAC 2 cut(s) 535, 736
HpyAV CCTTC 1 cut(s) 277
HpyCH4III ACNGT 2 cut(s) 630, 962
HpyCH4IV ACGT 2 cut(s) 238, 669
HpyCH4V TGCA 3 cut(s) 144, 610, 854
HpyF10VI GCNNNNNNNGC 9 cut(s) 241, 284, 293, 448, 465, 491, 616, 619, 910
HpyF3I CTNAG 3 cut(s) 336, 372, 431
HpySE526I ACGT 2 cut(s) 238, 669
Hsp92I GRCGYC 2 cut(s) 285, 669
Hsp92II CATG 3 cut(s) 716, 847, 901
HspAI GCGC 2 cut(s) 244, 385
Kpn2I TCCGGA 1 cut(s) 160
KspI CCGCGG 3 cut(s) 187, 279, 813
Kzo9I GATC 4 cut(s) 225, 588, 868, 964
LguI GCTCTTC 1 cut(s) 397
LmnI GCTCC 3 cut(s) 201, 332, 447
Lsp1109I GCAGC 7 cut(s) 208, 622, 631, 634, 754, 757, 850
MaeI CTAG 1 cut(s) 705
MaeII ACGT 2 cut(s) 238, 669
MaeIII GTNAC 2 cut(s) 476, 665
MalI GATC 4 cut(s) 227, 590, 870, 966
MboI GATC 4 cut(s) 225, 588, 868, 964
MboII GAAGA 8 cut(s) 20, 354, 384, 387, 402, 405, 408, 941
MflI RGATCY 3 cut(s) 225, 588, 868
MhlI GDGCHC 2 cut(s) 337, 940
MluCI AATT 2 cut(s) 520, 574
MlyI GAGTC 1 cut(s) 952
MmeI TCCRAC 2 cut(s) 61, 616
MroI TCCGGA 1 cut(s) 160
MseI TTAA 3 cut(s) 578, 675, 984
MslI CAYNNNNRTG 1 cut(s) 253
MspA1I CMGCKG 7 cut(s) 186, 199, 278, 474, 568, 812, 916
MspI CCGG 5 cut(s) 60, 161, 357, 456, 857
MspR9I CCNGG 2 cut(s) 331, 465
MvaI CCWGG 2 cut(s) 331, 465
MvnI CGCG 5 cut(s) 186, 278, 385, 387, 812
MwoI GCNNNNNNNGC 9 cut(s) 241, 284, 293, 448, 465, 491, 616, 619, 910
NcoI CCATGG 1 cut(s) 843
NdeII GATC 4 cut(s) 225, 588, 868, 964
NlaIII CATG 3 cut(s) 716, 847, 901
NlaIV GGNNCC 5 cut(s) 265, 328, 808, 870, 895
NmeAIII GCCGAG 2 cut(s) 427, 470
NmuCI GTSAC 1 cut(s) 665
OliI CACNNNNGTG 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 397
PfeI GAWTC 2 cut(s) 757, 763
PinAI ACCGGT 1 cut(s) 59
PleI GAGTC 1 cut(s) 951
PpsI GAGTC 1 cut(s) 951
Ppu21I YACGTR 1 cut(s) 239
PpuMI RGGWCCY 1 cut(s) 264
PshAI GACNNNNGTC 1 cut(s) 898
Psp5II RGGWCCY 1 cut(s) 264
Psp6I CCWGG 2 cut(s) 329, 463
PspFI CCCAGC 1 cut(s) 204
PspGI CCWGG 2 cut(s) 329, 463
PspN4I GGNNCC 5 cut(s) 265, 328, 808, 870, 895
PspPI GGNCC 6 cut(s) 158, 264, 450, 493, 807, 893
PspPPI RGGWCCY 1 cut(s) 264
PstNI CAGNNNCTG 1 cut(s) 946
PsuI RGATCY 3 cut(s) 225, 588, 868
PvuII CAGCTG 2 cut(s) 474, 568
RsaI GTAC 3 cut(s) 695, 735, 775
RsaNI GTAC 3 cut(s) 694, 734, 774
RseI CAYNNNNRTG 1 cut(s) 253
SacII CCGCGG 3 cut(s) 187, 279, 813
SapI GCTCTTC 1 cut(s) 397
SaqAI TTAA 3 cut(s) 578, 675, 984
Sau3AI GATC 4 cut(s) 225, 588, 868, 964
Sau96I GGNCC 6 cut(s) 158, 264, 450, 493, 807, 893
SchI GAGTC 1 cut(s) 952
ScrFI CCNGG 2 cut(s) 331, 465
SduI GDGCHC 2 cut(s) 337, 940
Sfr303I CCGCGG 3 cut(s) 187, 279, 813
SgrBI CCGCGG 3 cut(s) 187, 279, 813
SinI GGWCC 4 cut(s) 158, 264, 807, 893
SmiI ATTTAAAT 1 cut(s) 579
SmiMI CAYNNNNRTG 1 cut(s) 253
Sse9I AATT 2 cut(s) 520, 574
SspMI CTAG 1 cut(s) 705
StyD4I CCNGG 2 cut(s) 329, 463
StyI CCWWGG 1 cut(s) 843
SwaI ATTTAAAT 1 cut(s) 579
TaaI ACNGT 2 cut(s) 630, 962
TaiI ACGT 2 cut(s) 241, 672
TaqI TCGA 3 cut(s) 136, 797, 818
TaqII GACCGA 1 cut(s) 318
TasI AATT 2 cut(s) 520, 574
TatI WGTACW 2 cut(s) 733, 773
TauI GCSGC 7 cut(s) 83, 196, 290, 311, 390, 488, 916
TfiI GAWTC 2 cut(s) 757, 763
Tru1I TTAA 3 cut(s) 578, 675, 984
Tru9I TTAA 3 cut(s) 578, 675, 984
TseFI GTSAC 1 cut(s) 665
TseI GCWGC 7 cut(s) 196, 610, 619, 622, 742, 745, 838
Tsp45I GTSAC 1 cut(s) 665
TspDTI ATGAA 2 cut(s) 623, 806
TspGWI ACGGA 3 cut(s) 218, 265, 519
VpaK11BI GGWCC 4 cut(s) 158, 264, 807, 893
XspI CTAG 1 cut(s) 705
ZraI GACGTC 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.