FvH4_7g24760

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0014271
Physical Location & Seq
Reverse (-)
19064560 .. 19066602
2043 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g24760.t1

Sequence Viewer

Length: 969 bp
ATGGACGAAGACGACACTTCCCCACCTCACCCTCCCCAACGCCACGACAACAACAACGAGAGCGGTGCTGAAACCACCACCACCACCCCAACCGCCACAGCATCAGAATCCAAAGACGATAACAACAACCGAAAGTGCAAGGGCAAAGGTGGCCCGGACAACAACAAGTTCCGCTACCGCGGCGTGCGGCAGCGGAGCTGGGGTAAATGGGTGGCGGAGATTCGCGAGCCACGTAAGCGCACTCGCAAGTGGCTCGGGACCTTCGCCACCGCTGAAGACGCCGCCAGAGCCTACGACCGAGCCGCTATAATTCTCTACGGTTCTAGGGCTCAGCTCAATCTCCAGCCCTCCGGCTCTTCCTCCTCTCAGTCCTCCACGCGCGGCTCTTCTTCCTCATCGTCGTCTTCTTCTTCCACCCAAACCCTAAGACCTCTGCTCCCTCGGCCCTCCGGGTACACAGGCTTCAGCTGCAACTTCGCCTCTTCGGCTCATCCTTACGGTTTTGCACCCGCGCCCTACAATTCAATTGGGGTTTACCCTAACTCCTCCGTACAGATGAGCTCTCACCTGGAAAATCTGAAGCCACAGTATCAACAAGTTGTGGTGCAGCAACAGCAGCAGCAGCAGCAAGAGTTTCATCATTATCCATTATCATCTGATGGTTGCGGTGACGTCACCACCACCACCACCCCAACCTCGTACGTCCCAAACCCTAGTGTCCATGCTCATCAGCAATACCAAGTACACCAGCCACAGGATTTGAATCAGAATAATCGGAGCTGTACTTCCTACGAGGATATGAACTCGATTGTTGGGCCGCCGGGTTCGAGTTTGTCTATGTCTTCGCAGCCCATGGTGGTTGCACAGGCCGTTTCGGATCCGATGATGATGTCACCGATGTGGCCTCTGACGAACGAGGAAGAGTGTGCCCAGAGTCTCTGGGACTACTACGTTGAAGACTTGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000272 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009755 GO:0009756 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010154 GO:0010182 GO:0010353 GO:0010449 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010896 GO:0016052 GO:0019216 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031930 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0032880 GO:0033993 GO:0034284 GO:0034285 GO:0035266 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044042 GO:0044212 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0050994 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0090207 GO:0090696 GO:0097159 GO:0097305 GO:0097306 GO:0099402 GO:0140110 GO:1901363 GO:1901575 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

323

Amino Acids

35.6

Weight (kDa)

6.3

Isoelectric Point (pI)

63.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 58 - 107 2.8e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40220
fragaria_vesca FvH4_7g24760
malus_domestica MD01G1155400.v1.1 MD07G1224400.v1.1
prunus_persica Prupe.2G253000_v2.0.a1
pyrus_communis pycom01g17270 pycom13g15020
rosa_chinensis RchiOBHm_Chr1g0370631
rosa_laevigata RLG00000027023
rosa_multiflora Rmu_sc0002021.1_g000011
rosa_roxburghii Rroxscaffold_4G00286390
rosa_rugosa Rorug01G0358000
rosa_samantha Rh1AG367500 Rh1BG330800 Rh1CG345000 Rh1DG362300
rosa_wichuraiana Rw1G032340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 675
AccBSI CCGCTC 1 cut(s) 63
AccII CGCG 5 cut(s) 180, 225, 379, 381, 512
AclWI GGATC 2 cut(s) 872, 885
AcuI CTGAAG 3 cut(s) 294, 448, 599
AcyI GRCGYC 2 cut(s) 279, 672
AfaI GTAC 5 cut(s) 455, 552, 701, 744, 784
AfiI CCNNNNNNNGG 1 cut(s) 754
AgsI TTSAA 4 cut(s) 525, 763, 956, 964
AjnI CCWGG 1 cut(s) 567
AleI CACNNNNGTG 1 cut(s) 898
AluBI AGCT 5 cut(s) 198, 334, 468, 561, 780
AluI AGCT 5 cut(s) 198, 334, 468, 561, 780
Alw21I GWGCWC 1 cut(s) 563
Alw26I GTCTC 1 cut(s) 941
AlwI GGATC 2 cut(s) 872, 885
Ama87I CYCGRG 1 cut(s) 254
AoxI GGCC 5 cut(s) 151, 443, 815, 867, 902
ApeKI GCWGC 8 cut(s) 190, 468, 607, 616, 619, 622, 625, 847
AspLEI GCGC 3 cut(s) 240, 381, 514
AspS9I GGNCC 4 cut(s) 152, 258, 444, 815
AsuC2I CCSGG 3 cut(s) 155, 451, 822
AsuHPI GGTGA 5 cut(s) 20, 557, 667, 680, 885
AvaI CYCGRG 1 cut(s) 254
AvaII GGWCC 1 cut(s) 258
BaeGI GKGCMC 1 cut(s) 931
BamHI GGATCC 1 cut(s) 877
BanII GRGCYC 2 cut(s) 331, 563
BarI GAAGNNNNNNTAC 2 cut(s) 446, 478
BbsI GAAGAC 5 cut(s) 15, 282, 396, 834, 963
Bbv12I GWGCWC 1 cut(s) 563
BbvI GCAGC 8 cut(s) 202, 455, 619, 628, 631, 634, 637, 859
BccI CCATC 1 cut(s) 653
BceAI ACGGC 1 cut(s) 854
BcgI CGANNNNNNTGC 4 cut(s) 47, 81, 235, 269
BciT130I CCWGG 1 cut(s) 569
BcnI CCSGG 3 cut(s) 155, 451, 822
BcoDI GTCTC 1 cut(s) 941
BfaI CTAG 2 cut(s) 324, 714
BglI GCCNNNNNGGC 1 cut(s) 485
BlpI GCTNAGC 1 cut(s) 330
Bme1390I CCNGG 4 cut(s) 155, 451, 569, 822
Bme18I GGWCC 1 cut(s) 258
BmeT110I CYCGRG 1 cut(s) 254
BmgT120I GGNCC 4 cut(s) 152, 258, 444, 815
BmiI GGNNCC 2 cut(s) 259, 879
BmrFI CCNGG 4 cut(s) 155, 451, 569, 822
BmsI GCATC 1 cut(s) 110
BpiI GAAGAC 5 cut(s) 15, 282, 396, 834, 963
BpmI CTGGAG 1 cut(s) 326
Bpu1102I GCTNAGC 1 cut(s) 330
BpuMI CCSGG 3 cut(s) 155, 451, 822
BsaAI YACGTR 1 cut(s) 233
BsaBI GATNNNNATC 1 cut(s) 762
BsaHI GRCGYC 2 cut(s) 279, 672
BsaJI CCNNGG 3 cut(s) 178, 440, 852
BsaXI ACNNNNNCTCC 6 cut(s) 187, 217, 420, 450, 527, 557
Bsc4I CCNNNNNNNGG 1 cut(s) 754
Bse8I GATNNNNATC 1 cut(s) 762
BseBI CCWGG 1 cut(s) 569
BseDI CCNNGG 3 cut(s) 178, 440, 852
BseGI GGATG 1 cut(s) 490
BseJI GATNNNNATC 1 cut(s) 762
BseLI CCNNNNNNNGG 1 cut(s) 754
BseMII CTCAG 2 cut(s) 344, 380
BseRI GAGGAG 2 cut(s) 352, 535
BseSI GKGCMC 1 cut(s) 931
BseXI GCAGC 8 cut(s) 202, 455, 619, 628, 631, 634, 637, 859
BseYI CCCAGC 1 cut(s) 198
BsgI GTGCAG 1 cut(s) 626
Bsh1236I CGCG 5 cut(s) 180, 225, 379, 381, 512
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 5 cut(s) 153, 445, 817, 869, 904
BsiEI CGRYCG 1 cut(s) 298
BsiHKAI GWGCWC 1 cut(s) 563
BsiHKCI CYCGRG 1 cut(s) 254
BsiSI CCGG 4 cut(s) 155, 351, 450, 821
BsiWI CGTACG 1 cut(s) 699
BslFI GGGAC 3 cut(s) 271, 689, 956
BslI CCNNNNNNNGG 1 cut(s) 754
BsmAI GTCTC 1 cut(s) 941
BsmFI GGGAC 3 cut(s) 271, 689, 956
BsnI GGCC 5 cut(s) 153, 445, 817, 869, 904
BsoBI CYCGRG 1 cut(s) 254
Bsp1286I GDGCHC 3 cut(s) 331, 563, 931
Bsp143I GATC 1 cut(s) 877
Bsp1720I GCTNAGC 1 cut(s) 330
Bsp19I CCATGG 1 cut(s) 852
Bsp68I TCGCGA 1 cut(s) 225
BspANI GGCC 5 cut(s) 153, 445, 817, 869, 904
BspCNI CTCAG 2 cut(s) 343, 379
BspFNI CGCG 5 cut(s) 180, 225, 379, 381, 512
BspLI GGNNCC 2 cut(s) 259, 879
BspPI GGATC 2 cut(s) 872, 885
BspQI GCTCTTC 2 cut(s) 361, 391
BsrBI CCGCTC 1 cut(s) 63
BssECI CCNNGG 3 cut(s) 178, 440, 852
BssMI GATC 1 cut(s) 877
BssNI GRCGYC 2 cut(s) 279, 672
BssT1I CCWWGG 1 cut(s) 852
Bst2UI CCWGG 1 cut(s) 569
Bst4CI ACNGT 3 cut(s) 320, 500, 588
Bst6I CTCTTC 4 cut(s) 361, 391, 487, 915
BstACI GRCGYC 2 cut(s) 279, 672
BstBAI YACGTR 1 cut(s) 233
BstC8I GCNNGC 2 cut(s) 185, 227
BstDEI CTNAG 3 cut(s) 330, 366, 425
BstDSI CCRYGG 2 cut(s) 178, 852
BstF5I GGATG 1 cut(s) 490
BstFNI CGCG 5 cut(s) 180, 225, 379, 381, 512
BstHHI GCGC 3 cut(s) 240, 381, 514
BstKTI GATC 1 cut(s) 880
BstMAI GTCTC 1 cut(s) 941
BstMBI GATC 1 cut(s) 877
BstMCI CGRYCG 1 cut(s) 298
BstNI CCWGG 1 cut(s) 569
BstSCI CCNGG 4 cut(s) 153, 449, 567, 820
BstSLI GKGCMC 1 cut(s) 931
BstUI CGCG 5 cut(s) 180, 225, 379, 381, 512
BstV1I GCAGC 8 cut(s) 202, 455, 619, 628, 631, 634, 637, 859
BstV2I GAAGAC 5 cut(s) 15, 282, 396, 834, 963
BstX2I RGATCY 1 cut(s) 877
BstYI RGATCY 1 cut(s) 877
BsuRI GGCC 5 cut(s) 153, 445, 817, 869, 904
BtgI CCRYGG 2 cut(s) 178, 852
BtsCI GGATG 1 cut(s) 490
BtuMI TCGCGA 1 cut(s) 225
Cac8I GCNNGC 2 cut(s) 185, 227
CfoI GCGC 3 cut(s) 240, 381, 514
Cfr13I GGNCC 4 cut(s) 152, 258, 444, 815
Cfr42I CCGCGG 1 cut(s) 181
CseI GACGC 1 cut(s) 287
Csp6I GTAC 5 cut(s) 454, 551, 700, 743, 783
CspCI CAANNNNNGTGG 2 cut(s) 741, 776
CviAII CATG 2 cut(s) 722, 853
CviQI GTAC 5 cut(s) 454, 551, 700, 743, 783
DdeI CTNAG 3 cut(s) 330, 366, 425
DpnI GATC 1 cut(s) 879
DpnII GATC 1 cut(s) 877
Eam1104I CTCTTC 4 cut(s) 361, 391, 487, 915
EarI CTCTTC 4 cut(s) 361, 391, 487, 915
EciI GGCGGA 1 cut(s) 230
Ecl136II GAGCTC 1 cut(s) 561
Eco130I CCWWGG 1 cut(s) 852
Eco24I GRGCYC 2 cut(s) 331, 563
Eco47I GGWCC 1 cut(s) 258
Eco53kI GAGCTC 1 cut(s) 561
Eco57I CTGAAG 3 cut(s) 294, 448, 599
Eco88I CYCGRG 1 cut(s) 254
EcoICRI GAGCTC 1 cut(s) 561
EcoO109I RGGNCCY 1 cut(s) 258
EcoRII CCWGG 1 cut(s) 567
EcoT14I CCWWGG 1 cut(s) 852
EcoT38I GRGCYC 2 cut(s) 331, 563
ErhI CCWWGG 1 cut(s) 852
FaeI CATG 2 cut(s) 725, 856
FaiI YATR 5 cut(s) 308, 723, 800, 839, 854
FaqI GGGAC 3 cut(s) 271, 689, 956
FatI CATG 2 cut(s) 721, 852
FauI CCCGC 1 cut(s) 517
FokI GGATG 1 cut(s) 477
FriOI GRGCYC 2 cut(s) 331, 563
FspBI CTAG 2 cut(s) 324, 714
GlaI GCGC 3 cut(s) 239, 380, 513
GsaI CCCAGC 1 cut(s) 202
GsuI CTGGAG 1 cut(s) 326
HaeIII GGCC 5 cut(s) 153, 445, 817, 869, 904
HapII CCGG 4 cut(s) 155, 351, 450, 821
HgaI GACGC 1 cut(s) 287
HhaI GCGC 3 cut(s) 240, 381, 514
Hin1I GRCGYC 2 cut(s) 279, 672
Hin1II CATG 2 cut(s) 725, 856
Hin6I GCGC 3 cut(s) 238, 379, 512
HinP1I GCGC 3 cut(s) 238, 379, 512
HinfI GANTC 4 cut(s) 107, 220, 763, 934
HpaII CCGG 4 cut(s) 155, 351, 450, 821
HphI GGTGA 5 cut(s) 20, 557, 667, 680, 885
Hpy166II GTNNAC 3 cut(s) 456, 535, 745
Hpy188I TCNGA 8 cut(s) 106, 579, 658, 768, 777, 877, 882, 909
Hpy188III TCNNGA 2 cut(s) 224, 256
Hpy8I GTNNAC 3 cut(s) 456, 535, 745
Hpy99I CGWCG 1 cut(s) 403
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 3 cut(s) 320, 500, 588
HpyCH4IV ACGT 4 cut(s) 232, 672, 702, 951
HpyCH4V TGCA 5 cut(s) 138, 471, 506, 607, 863
HpyF3I CTNAG 3 cut(s) 330, 366, 425
HpySE526I ACGT 4 cut(s) 232, 672, 702, 951
Hsp92I GRCGYC 2 cut(s) 279, 672
Hsp92II CATG 2 cut(s) 725, 856
HspAI GCGC 3 cut(s) 238, 379, 512
KspI CCGCGG 1 cut(s) 181
Kzo9I GATC 1 cut(s) 877
LguI GCTCTTC 2 cut(s) 361, 391
LmnI GCTCC 3 cut(s) 195, 441, 777
Lsp1109I GCAGC 8 cut(s) 202, 455, 619, 628, 631, 634, 637, 859
LweI GCATC 1 cut(s) 110
MaeI CTAG 2 cut(s) 324, 714
MaeII ACGT 4 cut(s) 232, 672, 702, 951
MaeIII GTNAC 3 cut(s) 668, 673, 891
MalI GATC 1 cut(s) 879
MbiI CCGCTC 1 cut(s) 63
MboI GATC 1 cut(s) 877
MfeI CAATTG 1 cut(s) 525
MflI RGATCY 1 cut(s) 877
MhlI GDGCHC 3 cut(s) 331, 563, 931
MluCI AATT 3 cut(s) 309, 520, 525
MlyI GAGTC 1 cut(s) 943
MslI CAYNNNNRTG 1 cut(s) 898
MspA1I CMGCKG 4 cut(s) 180, 193, 272, 468
MspI CCGG 4 cut(s) 155, 351, 450, 821
MspR9I CCNGG 4 cut(s) 155, 451, 569, 822
MunI CAATTG 1 cut(s) 525
MvaI CCWGG 1 cut(s) 569
MvnI CGCG 5 cut(s) 180, 225, 379, 381, 512
NciI CCSGG 3 cut(s) 155, 451, 822
NcoI CCATGG 1 cut(s) 852
NdeII GATC 1 cut(s) 877
NlaIII CATG 2 cut(s) 725, 856
NlaIV GGNNCC 2 cut(s) 259, 879
NmeAIII GCCGAG 1 cut(s) 421
NmuCI GTSAC 3 cut(s) 668, 673, 891
NruI TCGCGA 1 cut(s) 225
OliI CACNNNNGTG 1 cut(s) 898
PciSI GCTCTTC 2 cut(s) 361, 391
PcsI WCGNNNNNNNCGW 1 cut(s) 229
PfeI GAWTC 3 cut(s) 107, 220, 763
Pfl23II CGTACG 1 cut(s) 699
PleI GAGTC 1 cut(s) 942
PpsI GAGTC 1 cut(s) 942
Ppu21I YACGTR 1 cut(s) 233
PpuMI RGGWCCY 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 563
Psp5II RGGWCCY 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 567
PspFI CCCAGC 1 cut(s) 198
PspGI CCWGG 1 cut(s) 567
PspLI CGTACG 1 cut(s) 699
PspN4I GGNNCC 2 cut(s) 259, 879
PspPI GGNCC 4 cut(s) 152, 258, 444, 815
PspPPI RGGWCCY 1 cut(s) 258
PsuI RGATCY 1 cut(s) 877
PvuII CAGCTG 1 cut(s) 468
RruI TCGCGA 1 cut(s) 225
RsaI GTAC 5 cut(s) 455, 552, 701, 744, 784
RsaNI GTAC 5 cut(s) 454, 551, 700, 743, 783
RseI CAYNNNNRTG 1 cut(s) 898
SacI GAGCTC 1 cut(s) 563
SacII CCGCGG 1 cut(s) 181
SapI GCTCTTC 2 cut(s) 361, 391
Sau3AI GATC 1 cut(s) 877
Sau96I GGNCC 4 cut(s) 152, 258, 444, 815
SchI GAGTC 1 cut(s) 943
ScrFI CCNGG 4 cut(s) 155, 451, 569, 822
SduI GDGCHC 3 cut(s) 331, 563, 931
SfaNI GCATC 1 cut(s) 110
Sfr303I CCGCGG 1 cut(s) 181
SgrBI CCGCGG 1 cut(s) 181
SinI GGWCC 1 cut(s) 258
SmiMI CAYNNNNRTG 1 cut(s) 898
Sse9I AATT 3 cut(s) 309, 520, 525
SspMI CTAG 2 cut(s) 324, 714
SstI GAGCTC 1 cut(s) 563
StyD4I CCNGG 4 cut(s) 153, 449, 567, 820
StyI CCWWGG 1 cut(s) 852
TaaI ACNGT 3 cut(s) 320, 500, 588
TaiI ACGT 4 cut(s) 235, 675, 705, 954
TaqI TCGA 2 cut(s) 806, 827
TaqII GACCGA 1 cut(s) 312
TasI AATT 3 cut(s) 309, 520, 525
TatI WGTACW 2 cut(s) 742, 782
TauI GCSGC 6 cut(s) 183, 190, 284, 305, 384, 820
TfiI GAWTC 3 cut(s) 107, 220, 763
TseFI GTSAC 3 cut(s) 668, 673, 891
TseI GCWGC 8 cut(s) 190, 468, 607, 616, 619, 622, 625, 847
Tsp45I GTSAC 3 cut(s) 668, 673, 891
TspDTI ATGAA 2 cut(s) 626, 815
TspGWI ACGGA 1 cut(s) 538
VpaK11BI GGWCC 1 cut(s) 258
XspI CTAG 2 cut(s) 324, 714
ZraI GACGTC 1 cut(s) 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.