Rh1DG362300

ethylene-responsive transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0014271
Physical Location & Seq
Reverse (-)
58931756 .. 58933165
1410 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG362300.1

Sequence Viewer

Length: 984 bp
ATGGACGAAGACGACACATCCCCACCTCACCCTCTCCAACGCAACAACGACAACGAAACCGGTGCTGAAACCACCACCGCCGCAACCACCACACCAACAACGAATACAACAGAAGCCAAAGACAACAGCAACAATCGAAAGTGCAAGGGCAAAGGTGGCCCGGACAACAACAAGTTCCGCTACCGCGGCGTGCGGCAGCGGAGCTGGGGCAAATGGGTGGCGGAGATCCGTGAGCCACGTAAGCGCACACGGAAGTGGCTCGGGACCTTCGCCACCGCCGAGGACGCGGCCAAAGCCTACGACCGAGCAGCTATCATCCTCTACGGCTCCAGGGCTCAGCTCAACCTCCAGCCTTCCGGTTCTTCCTCCTCTCAGTCCTCCACGCGCGGCTCTTCTTCCTCATCATCGTCTTCTTCTTCCAGCCAAACCCTAAGACCCCTTCTCCCTCGGCCCTCCGGCTACACAGGCTTCAGCTGTAACTTCGCCTCCTCGGCCCATCCTTACGGATTTGTTCCCTACAATTCTGTTGGGGTTTACCCTAACTCGTCCGTACAGATGAGTAATCAGCTGGAAAATTTAAATCCACAGATCCAACAGCAAGTTGTGGTGCAGCAACAGTTTCATCATTATCCATTATCATCTGATGGTTGCGGTGACGTCATTAACACCACACCAACCTCGTACCCAAACCCTAGTGTCCATGCTCATCAGCAATACCAAGTACACCAGCAACAGGATTTGAATAAGAATCAGAGTTGTACTTCTTACGAGGATATGAACTCGATTGTTGGGTCCGCGGGTTCGAGTTTGTCTATGTCATCGCAGCCCATGGTGGTTGCACCGGCGGTTTCGGATCCGATGATGATGGCACAAGGCGGACCCATGTCGCCGATGTGGCCGCTGACGAACGAGGAAGAGTGTGCCCAGAGTCTGTGGGACTACTACGGTGATCCTTTCTTTTTGGATTTTAAAGGATTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000272 GO:0001067 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006355 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009755 GO:0009756 GO:0009791 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009894 GO:0009987 GO:0010033 GO:0010035 GO:0010119 GO:0010154 GO:0010182 GO:0010353 GO:0010449 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010896 GO:0016052 GO:0019216 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031930 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0032880 GO:0033993 GO:0034284 GO:0034285 GO:0035266 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044042 GO:0044212 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0050994 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071396 GO:0071495 GO:0071704 GO:0080090 GO:0090207 GO:0090696 GO:0097159 GO:0097305 GO:0097306 GO:0099402 GO:0140110 GO:1901363 GO:1901575 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2

Protein Analysis

327

Amino Acids

35.88

Weight (kDa)

6.17

Isoelectric Point (pI)

57.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 60 - 109 3.8e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014271)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40220
fragaria_vesca FvH4_7g24760
malus_domestica MD01G1155400.v1.1 MD07G1224400.v1.1
prunus_persica Prupe.2G253000_v2.0.a1
pyrus_communis pycom01g17270 pycom13g15020
rosa_chinensis RchiOBHm_Chr1g0370631
rosa_laevigata RLG00000027023
rosa_multiflora Rmu_sc0002021.1_g000011
rosa_roxburghii Rroxscaffold_4G00286390
rosa_rugosa Rorug01G0358000
rosa_samantha Rh1AG367500 Rh1BG330800 Rh1CG345000 Rh1DG362300
rosa_wichuraiana Rw1G032340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 660
AccII CGCG 5 cut(s) 186, 287, 385, 387, 797
AclWI GGATC 5 cut(s) 220, 583, 848, 861, 944
AcoI YGGCCR 2 cut(s) 288, 896
AcsI RAATTY 1 cut(s) 574
AcuI CTGAAG 1 cut(s) 454
AcyI GRCGYC 1 cut(s) 657
AfaI GTAC 4 cut(s) 552, 683, 723, 760
AfiI CCNNNNNNNGG 1 cut(s) 733
AgeI ACCGGT 1 cut(s) 59
AgsI TTSAA 1 cut(s) 742
AjnI CCWGG 1 cut(s) 329
AleI CACNNNNGTG 1 cut(s) 253
AluBI AGCT 5 cut(s) 204, 311, 340, 474, 568
AluI AGCT 5 cut(s) 204, 311, 340, 474, 568
AlwI GGATC 5 cut(s) 220, 583, 848, 861, 944
AlwNI CAGNNNCTG 1 cut(s) 931
Ama87I CYCGRG 1 cut(s) 260
AoxI GGCC 5 cut(s) 157, 288, 449, 492, 896
ApeKI GCWGC 4 cut(s) 196, 308, 610, 823
ApoI RAATTY 1 cut(s) 574
AsiGI ACCGGT 1 cut(s) 59
AspLEI GCGC 2 cut(s) 246, 387
AspS9I GGNCC 6 cut(s) 158, 264, 450, 493, 792, 878
AsuC2I CCSGG 1 cut(s) 161
AsuHPI GGTGA 3 cut(s) 20, 665, 959
AvaI CYCGRG 1 cut(s) 260
AvaII GGWCC 3 cut(s) 264, 792, 878
BaeGI GKGCMC 1 cut(s) 925
BamHI GGATCC 1 cut(s) 853
BanII GRGCYC 1 cut(s) 337
BbsI GAAGAC 2 cut(s) 15, 402
BbvI GCAGC 4 cut(s) 208, 320, 622, 835
BccI CCATC 3 cut(s) 504, 638, 859
BceAI ACGGC 1 cut(s) 340
BcgI CGANNNNNNTGC 2 cut(s) 44, 78
BciT130I CCWGG 1 cut(s) 331
BcnI CCSGG 1 cut(s) 161
BfaI CTAG 1 cut(s) 693
BglI GCCNNNNNGGC 2 cut(s) 491, 895
BlpI GCTNAGC 1 cut(s) 336
Bme1390I CCNGG 2 cut(s) 161, 331
Bme18I GGWCC 3 cut(s) 264, 792, 878
BmeT110I CYCGRG 1 cut(s) 260
BmgT120I GGNCC 6 cut(s) 158, 264, 450, 493, 792, 878
BmiI GGNNCC 5 cut(s) 265, 328, 793, 855, 880
BmrFI CCNGG 2 cut(s) 161, 331
BoxI GACNNNNGTC 1 cut(s) 883
BpiI GAAGAC 2 cut(s) 15, 402
BpmI CTGGAG 2 cut(s) 313, 332
Bpu1102I GCTNAGC 1 cut(s) 336
BpuMI CCSGG 1 cut(s) 161
BsaAI YACGTR 1 cut(s) 239
BsaHI GRCGYC 1 cut(s) 657
BsaJI CCNNGG 7 cut(s) 184, 279, 330, 446, 489, 795, 828
BsaWI WCCGGW 2 cut(s) 59, 356
BsaXI ACNNNNNCTCC 4 cut(s) 426, 456, 470, 500
Bsc4I CCNNNNNNNGG 1 cut(s) 733
Bse118I RCCGGY 2 cut(s) 59, 841
BseBI CCWGG 1 cut(s) 331
BseDI CCNNGG 7 cut(s) 184, 279, 330, 446, 489, 795, 828
BseGI GGATG 3 cut(s) 17, 315, 496
BseLI CCNNNNNNNGG 1 cut(s) 733
BseMII CTCAG 2 cut(s) 350, 386
BseRI GAGGAG 2 cut(s) 358, 478
BseSI GKGCMC 1 cut(s) 925
BseXI GCAGC 4 cut(s) 208, 320, 622, 835
BseYI CCCAGC 1 cut(s) 204
BsgI GTGCAG 1 cut(s) 629
Bsh1236I CGCG 5 cut(s) 186, 287, 385, 387, 797
Bsh1285I CGRYCG 1 cut(s) 304
BshFI GGCC 5 cut(s) 159, 290, 451, 494, 898
BshTI ACCGGT 1 cut(s) 59
BsiEI CGRYCG 1 cut(s) 304
BsiHKCI CYCGRG 1 cut(s) 260
BsiSI CCGG 5 cut(s) 60, 161, 357, 456, 842
BslFI GGGAC 2 cut(s) 277, 950
BslI CCNNNNNNNGG 1 cut(s) 733
BsmFI GGGAC 2 cut(s) 277, 950
BsnI GGCC 5 cut(s) 159, 290, 451, 494, 898
BsoBI CYCGRG 1 cut(s) 260
Bsp1286I GDGCHC 2 cut(s) 337, 925
Bsp143I GATC 4 cut(s) 225, 588, 853, 949
Bsp1720I GCTNAGC 1 cut(s) 336
Bsp19I CCATGG 1 cut(s) 828
BspANI GGCC 5 cut(s) 159, 290, 451, 494, 898
BspCNI CTCAG 2 cut(s) 349, 385
BspFNI CGCG 5 cut(s) 186, 287, 385, 387, 797
BspLI GGNNCC 5 cut(s) 265, 328, 793, 855, 880
BspPI GGATC 5 cut(s) 220, 583, 848, 861, 944
BspQI GCTCTTC 1 cut(s) 397
BsrFI RCCGGY 2 cut(s) 59, 841
BssAI RCCGGY 2 cut(s) 59, 841
BssECI CCNNGG 7 cut(s) 184, 279, 330, 446, 489, 795, 828
BssMI GATC 4 cut(s) 225, 588, 853, 949
BssNI GRCGYC 1 cut(s) 657
BssT1I CCWWGG 1 cut(s) 828
Bst2UI CCWGG 1 cut(s) 331
Bst4CI ACNGT 2 cut(s) 618, 947
Bst6I CTCTTC 2 cut(s) 397, 909
BstACI GRCGYC 1 cut(s) 657
BstBAI YACGTR 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 3 cut(s) 336, 372, 431
BstDSI CCRYGG 3 cut(s) 184, 795, 828
BstF5I GGATG 3 cut(s) 17, 315, 496
BstFNI CGCG 5 cut(s) 186, 287, 385, 387, 797
BstHHI GCGC 2 cut(s) 246, 387
BstKTI GATC 4 cut(s) 228, 591, 856, 952
BstMBI GATC 4 cut(s) 225, 588, 853, 949
BstMCI CGRYCG 1 cut(s) 304
BstMWI GCNNNNNNNGC 8 cut(s) 156, 186, 241, 284, 293, 465, 491, 895
BstNI CCWGG 1 cut(s) 331
BstPAI GACNNNNGTC 1 cut(s) 883
BstSCI CCNGG 2 cut(s) 159, 329
BstSLI GKGCMC 1 cut(s) 925
BstUI CGCG 5 cut(s) 186, 287, 385, 387, 797
BstV1I GCAGC 4 cut(s) 208, 320, 622, 835
BstV2I GAAGAC 2 cut(s) 15, 402
BstX2I RGATCY 3 cut(s) 225, 588, 853
BstYI RGATCY 3 cut(s) 225, 588, 853
BsuRI GGCC 5 cut(s) 159, 290, 451, 494, 898
BtgI CCRYGG 3 cut(s) 184, 795, 828
BtgZI GCGATG 1 cut(s) 804
BtsCI GGATG 3 cut(s) 17, 315, 496
Cac8I GCNNGC 1 cut(s) 191
CaiI CAGNNNCTG 1 cut(s) 931
CfoI GCGC 2 cut(s) 246, 387
Cfr10I RCCGGY 2 cut(s) 59, 841
Cfr13I GGNCC 6 cut(s) 158, 264, 450, 493, 792, 878
Cfr42I CCGCGG 2 cut(s) 187, 798
CseI GACGC 1 cut(s) 293
Csp6I GTAC 4 cut(s) 551, 682, 722, 759
CspAI ACCGGT 1 cut(s) 59
CviAII CATG 3 cut(s) 701, 829, 883
CviQI GTAC 4 cut(s) 551, 682, 722, 759
DdeI CTNAG 3 cut(s) 336, 372, 431
DpnI GATC 4 cut(s) 227, 590, 855, 951
DpnII GATC 4 cut(s) 225, 588, 853, 949
DraI TTTAAA 2 cut(s) 579, 970
EaeI YGGCCR 2 cut(s) 288, 896
Eam1104I CTCTTC 2 cut(s) 397, 909
EarI CTCTTC 2 cut(s) 397, 909
EciI GGCGGA 2 cut(s) 236, 891
Eco130I CCWWGG 1 cut(s) 828
Eco24I GRGCYC 1 cut(s) 337
Eco47I GGWCC 3 cut(s) 264, 792, 878
Eco57I CTGAAG 1 cut(s) 454
Eco88I CYCGRG 1 cut(s) 260
EcoO109I RGGNCCY 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 329
EcoT14I CCWWGG 1 cut(s) 828
EcoT38I GRGCYC 1 cut(s) 337
ErhI CCWWGG 1 cut(s) 828
FaeI CATG 3 cut(s) 704, 832, 886
FaiI YATR 5 cut(s) 702, 776, 815, 830, 884
FaqI GGGAC 2 cut(s) 277, 950
FatI CATG 3 cut(s) 700, 828, 882
FauI CCCGC 1 cut(s) 790
FokI GGATG 3 cut(s) 4, 302, 483
FriOI GRGCYC 1 cut(s) 337
FspBI CTAG 1 cut(s) 693
GlaI GCGC 2 cut(s) 245, 386
GsaI CCCAGC 1 cut(s) 208
GsuI CTGGAG 2 cut(s) 313, 332
HaeIII GGCC 5 cut(s) 159, 290, 451, 494, 898
HapII CCGG 5 cut(s) 60, 161, 357, 456, 842
HgaI GACGC 1 cut(s) 293
HhaI GCGC 2 cut(s) 246, 387
Hin1I GRCGYC 1 cut(s) 657
Hin1II CATG 3 cut(s) 704, 832, 886
Hin6I GCGC 2 cut(s) 244, 385
HinP1I GCGC 2 cut(s) 244, 385
HinfI GANTC 2 cut(s) 748, 928
HpaII CCGG 5 cut(s) 60, 161, 357, 456, 842
HphI GGTGA 3 cut(s) 20, 665, 959
Hpy166II GTNNAC 2 cut(s) 535, 724
Hpy188I TCNGA 4 cut(s) 643, 753, 853, 858
Hpy188III TCNNGA 1 cut(s) 262
Hpy8I GTNNAC 2 cut(s) 535, 724
HpyAV CCTTC 3 cut(s) 277, 363, 449
HpyCH4III ACNGT 2 cut(s) 618, 947
HpyCH4IV ACGT 2 cut(s) 238, 657
HpyCH4V TGCA 3 cut(s) 144, 610, 839
HpyF10VI GCNNNNNNNGC 8 cut(s) 156, 186, 241, 284, 293, 465, 491, 895
HpyF3I CTNAG 3 cut(s) 336, 372, 431
HpySE526I ACGT 2 cut(s) 238, 657
Hsp92I GRCGYC 1 cut(s) 657
Hsp92II CATG 3 cut(s) 704, 832, 886
HspAI GCGC 2 cut(s) 244, 385
KspI CCGCGG 2 cut(s) 187, 798
Kzo9I GATC 4 cut(s) 225, 588, 853, 949
LguI GCTCTTC 1 cut(s) 397
LmnI GCTCC 2 cut(s) 201, 332
Lsp1109I GCAGC 4 cut(s) 208, 320, 622, 835
MaeI CTAG 1 cut(s) 693
MaeII ACGT 2 cut(s) 238, 657
MaeIII GTNAC 2 cut(s) 476, 653
MalI GATC 4 cut(s) 227, 590, 855, 951
MboI GATC 4 cut(s) 225, 588, 853, 949
MboII GAAGA 8 cut(s) 20, 354, 384, 387, 402, 405, 408, 926
MflI RGATCY 3 cut(s) 225, 588, 853
MhlI GDGCHC 2 cut(s) 337, 925
MluCI AATT 2 cut(s) 520, 574
MlyI GAGTC 1 cut(s) 937
MmeI TCCRAC 2 cut(s) 61, 616
MseI TTAA 3 cut(s) 578, 663, 969
MslI CAYNNNNRTG 1 cut(s) 253
MspA1I CMGCKG 6 cut(s) 186, 199, 474, 568, 797, 901
MspI CCGG 5 cut(s) 60, 161, 357, 456, 842
MspR9I CCNGG 2 cut(s) 161, 331
MvaI CCWGG 1 cut(s) 331
MvnI CGCG 5 cut(s) 186, 287, 385, 387, 797
MwoI GCNNNNNNNGC 8 cut(s) 156, 186, 241, 284, 293, 465, 491, 895
NciI CCSGG 1 cut(s) 161
NcoI CCATGG 1 cut(s) 828
NdeII GATC 4 cut(s) 225, 588, 853, 949
NlaIII CATG 3 cut(s) 704, 832, 886
NlaIV GGNNCC 5 cut(s) 265, 328, 793, 855, 880
NmeAIII GCCGAG 3 cut(s) 304, 427, 470
NmuCI GTSAC 1 cut(s) 653
OliI CACNNNNGTG 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 397
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PfeI GAWTC 1 cut(s) 748
PinAI ACCGGT 1 cut(s) 59
PleI GAGTC 1 cut(s) 936
PpsI GAGTC 1 cut(s) 936
Ppu21I YACGTR 1 cut(s) 239
PpuMI RGGWCCY 1 cut(s) 264
PshAI GACNNNNGTC 1 cut(s) 883
Psp5II RGGWCCY 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 329
PspFI CCCAGC 1 cut(s) 204
PspGI CCWGG 1 cut(s) 329
PspN4I GGNNCC 5 cut(s) 265, 328, 793, 855, 880
PspPI GGNCC 6 cut(s) 158, 264, 450, 493, 792, 878
PspPPI RGGWCCY 1 cut(s) 264
PstNI CAGNNNCTG 1 cut(s) 931
PsuI RGATCY 3 cut(s) 225, 588, 853
PvuII CAGCTG 2 cut(s) 474, 568
RsaI GTAC 4 cut(s) 552, 683, 723, 760
RsaNI GTAC 4 cut(s) 551, 682, 722, 759
RseI CAYNNNNRTG 1 cut(s) 253
SacII CCGCGG 2 cut(s) 187, 798
SapI GCTCTTC 1 cut(s) 397
SaqAI TTAA 3 cut(s) 578, 663, 969
Sau3AI GATC 4 cut(s) 225, 588, 853, 949
Sau96I GGNCC 6 cut(s) 158, 264, 450, 493, 792, 878
SchI GAGTC 1 cut(s) 937
ScrFI CCNGG 2 cut(s) 161, 331
SduI GDGCHC 2 cut(s) 337, 925
Sfr303I CCGCGG 2 cut(s) 187, 798
SgrAI CRCCGGYG 1 cut(s) 841
SgrBI CCGCGG 2 cut(s) 187, 798
SinI GGWCC 3 cut(s) 264, 792, 878
SmiI ATTTAAAT 1 cut(s) 579
SmiMI CAYNNNNRTG 1 cut(s) 253
Sse9I AATT 2 cut(s) 520, 574
SspMI CTAG 1 cut(s) 693
StyD4I CCNGG 2 cut(s) 159, 329
StyI CCWWGG 1 cut(s) 828
SwaI ATTTAAAT 1 cut(s) 579
TaaI ACNGT 2 cut(s) 618, 947
TaiI ACGT 2 cut(s) 241, 660
TaqI TCGA 3 cut(s) 136, 782, 803
TaqII GACCGA 1 cut(s) 318
TasI AATT 2 cut(s) 520, 574
TatI WGTACW 2 cut(s) 721, 758
TauI GCSGC 6 cut(s) 83, 189, 196, 290, 390, 901
TfiI GAWTC 1 cut(s) 748
Tru1I TTAA 3 cut(s) 578, 663, 969
Tru9I TTAA 3 cut(s) 578, 663, 969
TseFI GTSAC 1 cut(s) 653
TseI GCWGC 4 cut(s) 196, 308, 610, 823
Tsp45I GTSAC 1 cut(s) 653
TspDTI ATGAA 2 cut(s) 611, 791
TspGWI ACGGA 4 cut(s) 218, 265, 519, 538
VpaK11BI GGWCC 3 cut(s) 264, 792, 878
XapI RAATTY 1 cut(s) 574
XspI CTAG 1 cut(s) 693
ZraI GACGTC 1 cut(s) 658
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.