AT2G40800

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0010231
Physical Location & Seq
Reverse (-)
17024255 .. 17027022
2768 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G40800.1

Sequence Viewer

Length: 1134 bp
ATGGTGAAACCATCGGATTTCAAAGCAATTCAAGGGTTTATTCGGCTGCATTACACTCGGGTCAACCCTGTCACAATTGGCCGATCAAACCCATCAGCTTTGTCTTCTCCAGCTATTCCCTCCAATGGTGTTTCTCAGCTTCAGCCTAAGTTTAGCTTCCACAGCTTATCCTCGAAACCCACTTCCAAAAACGTGGGATTATATCAGATTCTGTCGTCTCCTAAGCTCAATCCTAAGTTGCAGCAAGCTTTGGGTTTGCCTCGTGTGAATGTGAGTTTTGCATCGGCGTTTAGATTGGTATCCACTAAGAGCTCTGGATTTCGAAAGGTTGATGGGAGTTTTGCGAGAAAGGTTGTTGATAAGCCTGTCAAAGCTGTTAGTTCTACTTTTGCTAGATACCGTGAGGCTATAGGGTTGCACATTGATGCATTTTGGAAAAAGAATAGTCTTGTTGTGTTTGGAGCTGCAGGTGTTTTTGTATGTATTTTCCTTTGGCGGATTATGTTTGGAATTGCTAGTACGTTTGTTGGCCTCTCAGAGGGCATGGCCAAGTATGGGTTTCTTGCACTCTCCTCAGCCATTGTAGCATTTTCTGGATTATACCTCCGCTCAAGGTTTACAATTAATCCGGATAAAGTTTATAGAATGACCATGAGGAAGATCAACACGGCAGCTGAAATTCTAGAAGTTATGGGTGCTCCTCTGTCAGGATCAGATTTACGAGCGTATGTGATGTCAGGTGGTGGCATAACATTTAAGAAATTCAAGCCAACAATTAGGAGCAAGCGCTGCTTTCTTCTATTCCCCGTTCAGGGTTCTGAGCAAAAGGGCCTTGTTAGCGTTGAAGTTAAGAAGAAGAAAGGCCAGTATGACATGAAGCTTTTGGCGGTAGATATTCCAATGGCATCTGGTCCCGACCAACGGTTATTTCTGATTGGCGATGAAGAAGAGTACAGAATTGGTGGTGGTTTAATCTCTGTGTTAAGAGACCCTGTTGTGAAAGCAATGGCAGCAACTAAGGAGTTCGATAATCTTGATAGAATCGAAGAGGAAGAAGACGCTGAAAGAGAACTTCAAGAAGCTGAAAGAAAGCATCGTGAAGAGATCGAGAAACTCGAGAAGGAGGGCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIM21

Protein Analysis

377

Amino Acids

41.74

Weight (kDa)

9.81

Isoelectric Point (pI)

39.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 458
Acc36I ACCTGC 1 cut(s) 458
AccBSI CCGCTC 1 cut(s) 609
AccIII TCCGGA 1 cut(s) 628
AciI CCGC 3 cut(s) 496, 607, 887
AclWI GGATC 1 cut(s) 718
AcoI YGGCCR 2 cut(s) 79, 546
AcsI RAATTY 2 cut(s) 678, 761
AcuI CTGAAG 1 cut(s) 125
AfaI GTAC 2 cut(s) 520, 953
AfeI AGCGCT 1 cut(s) 788
AfiI CCNNNNNNNGG 7 cut(s) 125, 538, 555, 707, 811, 812, 921
AgsI TTSAA 5 cut(s) 22, 32, 766, 845, 1076
AjuI GAANNNNNNNTTGG 2 cut(s) 912, 944
Alw21I GWGCWC 2 cut(s) 314, 700
Alw26I GTCTC 2 cut(s) 222, 981
AlwI GGATC 1 cut(s) 718
AlwNI CAGNNNCTG 1 cut(s) 211
Ama87I CYCGRG 2 cut(s) 57, 1115
Aor13HI TCCGGA 1 cut(s) 628
Aor51HI AGCGCT 1 cut(s) 788
AoxI GGCC 5 cut(s) 79, 529, 546, 829, 862
ApeKI GCWGC 6 cut(s) 46, 241, 464, 671, 789, 1010
ApoI RAATTY 2 cut(s) 678, 761
AseI ATTAAT 1 cut(s) 624
AspLEI GCGC 1 cut(s) 789
AspS9I GGNCC 2 cut(s) 829, 911
AsuHPI GGTGA 1 cut(s) 16
AsuII TTCGAA 1 cut(s) 322
AvaI CYCGRG 2 cut(s) 57, 1115
AvaII GGWCC 1 cut(s) 911
BalI TGGCCA 1 cut(s) 548
BanII GRGCYC 2 cut(s) 314, 1130
BauI CACGAG 1 cut(s) 261
BbsI GAAGAC 2 cut(s) 96, 1062
Bbv12I GWGCWC 2 cut(s) 314, 700
BbvCI CCTCAGC 1 cut(s) 574
BbvI GCAGC 6 cut(s) 33, 253, 451, 683, 776, 1022
BccI CCATC 3 cut(s) 19, 100, 326
BceAI ACGGC 1 cut(s) 684
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BciVI GTATCC 1 cut(s) 310
BcoDI GTCTC 2 cut(s) 222, 981
BfaI CTAG 3 cut(s) 393, 516, 683
BfmI CTRYAG 2 cut(s) 408, 465
BfoI RGCGCY 1 cut(s) 790
BfuAI ACCTGC 1 cut(s) 458
BfuI GTATCC 1 cut(s) 310
BisI GCNGC 6 cut(s) 47, 242, 465, 672, 790, 1011
BlsI GCNGC 6 cut(s) 48, 243, 466, 673, 791, 1012
Bme18I GGWCC 1 cut(s) 911
BmeT110I CYCGRG 2 cut(s) 57, 1115
BmgT120I GGNCC 2 cut(s) 829, 911
BmiI GGNNCC 1 cut(s) 913
BmsI GCATC 4 cut(s) 290, 415, 914, 1102
BpiI GAAGAC 2 cut(s) 96, 1062
BpmI CTGGAG 1 cut(s) 93
Bpu10I CCTNAGC 2 cut(s) 222, 574
Bpu14I TTCGAA 1 cut(s) 322
BpuEI CTTGAG 1 cut(s) 595
BsaBI GATNNNNATC 1 cut(s) 298
BsaI GGTCTC 1 cut(s) 981
BsaWI WCCGGW 1 cut(s) 628
Bsc4I CCNNNNNNNGG 7 cut(s) 125, 538, 555, 707, 811, 812, 921
Bse1I ACTGG 1 cut(s) 865
Bse3DI GCAATG 1 cut(s) 1011
Bse8I GATNNNNATC 1 cut(s) 298
BseAI TCCGGA 1 cut(s) 628
BseJI GATNNNNATC 1 cut(s) 298
BseLI CCNNNNNNNGG 7 cut(s) 125, 538, 555, 707, 811, 812, 921
BseMI GCAATG 1 cut(s) 1011
BseMII CTCAG 4 cut(s) 149, 549, 588, 810
BseNI ACTGG 1 cut(s) 865
BseRI GAGGAG 2 cut(s) 562, 690
BseXI GCAGC 6 cut(s) 33, 253, 451, 683, 776, 1022
BshFI GGCC 5 cut(s) 81, 531, 548, 831, 864
BsiHKAI GWGCWC 2 cut(s) 314, 700
BsiHKCI CYCGRG 2 cut(s) 57, 1115
BsiSI CCGG 1 cut(s) 629
BslFI GGGAC 1 cut(s) 897
BslI CCNNNNNNNGG 7 cut(s) 125, 538, 555, 707, 811, 812, 921
BsmAI GTCTC 2 cut(s) 222, 981
BsmBI CGTCTC 1 cut(s) 222
BsmFI GGGAC 1 cut(s) 897
BsnI GGCC 5 cut(s) 81, 531, 548, 831, 864
Bso31I GGTCTC 1 cut(s) 981
BsoBI CYCGRG 2 cut(s) 57, 1115
Bsp119I TTCGAA 1 cut(s) 322
Bsp1286I GDGCHC 3 cut(s) 314, 700, 1130
Bsp13I TCCGGA 1 cut(s) 628
Bsp143I GATC 4 cut(s) 83, 660, 710, 1104
BspACI CCGC 3 cut(s) 496, 607, 887
BspANI GGCC 5 cut(s) 81, 531, 548, 831, 864
BspCNI CTCAG 4 cut(s) 148, 548, 587, 811
BspEI TCCGGA 1 cut(s) 628
BspLI GGNNCC 1 cut(s) 913
BspMAI CTGCAG 1 cut(s) 469
BspMI ACCTGC 1 cut(s) 458
BspPI GGATC 1 cut(s) 718
BspT104I TTCGAA 1 cut(s) 322
BspTNI GGTCTC 1 cut(s) 981
BsrBI CCGCTC 1 cut(s) 609
BsrDI GCAATG 1 cut(s) 1011
BsrI ACTGG 1 cut(s) 865
BssMI GATC 4 cut(s) 83, 660, 710, 1104
BssSI CACGAG 1 cut(s) 261
Bst2BI CACGAG 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 401, 924
Bst6I CTCTTC 3 cut(s) 942, 1041, 1095
BstAPI GCANNNNNTGC 1 cut(s) 789
BstBI TTCGAA 1 cut(s) 322
BstC8I GCNNGC 2 cut(s) 246, 785
BstDEI CTNAG 9 cut(s) 135, 147, 222, 234, 306, 535, 574, 819, 1017
BstENI CCTNNNNNAGG 2 cut(s) 536, 705
BstH2I RGCGCY 1 cut(s) 790
BstHHI GCGC 1 cut(s) 789
BstKTI GATC 4 cut(s) 86, 663, 713, 1107
BstMAI GTCTC 2 cut(s) 222, 981
BstMBI GATC 4 cut(s) 83, 660, 710, 1104
BstMWI GCNNNNNNNGC 5 cut(s) 162, 584, 789, 837, 1010
BstSFI CTRYAG 2 cut(s) 408, 465
BstV1I GCAGC 6 cut(s) 33, 253, 451, 683, 776, 1022
BstV2I GAAGAC 2 cut(s) 96, 1062
BstXI CCANNNNNNTGG 1 cut(s) 193
BsuI GTATCC 1 cut(s) 310
BsuRI GGCC 5 cut(s) 81, 531, 548, 831, 864
BtgZI GCGATG 1 cut(s) 954
BveI ACCTGC 1 cut(s) 458
Cac8I GCNNGC 2 cut(s) 246, 785
CaiI CAGNNNCTG 1 cut(s) 211
CfoI GCGC 1 cut(s) 789
Cfr13I GGNCC 2 cut(s) 829, 911
CseI GACGC 1 cut(s) 1067
Csp6I GTAC 2 cut(s) 519, 952
CviAII CATG 3 cut(s) 544, 652, 874
CviQI GTAC 2 cut(s) 519, 952
DdeI CTNAG 9 cut(s) 135, 147, 222, 234, 306, 535, 574, 819, 1017
DpnI GATC 4 cut(s) 85, 662, 712, 1106
DpnII GATC 4 cut(s) 83, 660, 710, 1104
EaeI YGGCCR 2 cut(s) 79, 546
Eam1104I CTCTTC 3 cut(s) 942, 1041, 1095
EarI CTCTTC 3 cut(s) 942, 1041, 1095
EciI GGCGGA 1 cut(s) 511
Ecl136II GAGCTC 1 cut(s) 312
Eco24I GRGCYC 2 cut(s) 314, 1130
Eco31I GGTCTC 1 cut(s) 981
Eco47I GGWCC 1 cut(s) 911
Eco47III AGCGCT 1 cut(s) 788
Eco53kI GAGCTC 1 cut(s) 312
Eco57I CTGAAG 1 cut(s) 125
Eco88I CYCGRG 2 cut(s) 57, 1115
EcoICRI GAGCTC 1 cut(s) 312
EcoNI CCTNNNNNAGG 2 cut(s) 536, 705
EcoO109I RGGNCCY 1 cut(s) 829
EcoT22I ATGCAT 1 cut(s) 430
EcoT38I GRGCYC 2 cut(s) 314, 1130
Esp3I CGTCTC 1 cut(s) 222
FaeI CATG 3 cut(s) 547, 655, 877
FalI AAGNNNNNCTT 4 cut(s) 140, 172, 776, 808
FaqI GGGAC 1 cut(s) 897
FatI CATG 3 cut(s) 543, 651, 873
Fnu4HI GCNGC 6 cut(s) 47, 242, 465, 672, 790, 1011
FriOI GRGCYC 2 cut(s) 314, 1130
Fsp4HI GCNGC 6 cut(s) 47, 242, 465, 672, 790, 1011
FspBI CTAG 3 cut(s) 393, 516, 683
GlaI GCGC 1 cut(s) 788
GluI GCNGC 6 cut(s) 47, 242, 465, 672, 790, 1011
GsuI CTGGAG 1 cut(s) 93
HaeII RGCGCY 1 cut(s) 790
HaeIII GGCC 5 cut(s) 81, 531, 548, 831, 864
HapII CCGG 1 cut(s) 629
HgaI GACGC 1 cut(s) 1067
HhaI GCGC 1 cut(s) 789
Hin1II CATG 3 cut(s) 547, 655, 877
Hin6I GCGC 1 cut(s) 787
HinP1I GCGC 1 cut(s) 787
HincII GTYRAC 1 cut(s) 64
HindII GTYRAC 1 cut(s) 64
HindIII AAGCTT 2 cut(s) 246, 878
HinfI GANTC 2 cut(s) 208, 1041
HpaII CCGG 1 cut(s) 629
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 2 cut(s) 64, 618
Hpy188I TCNGA 6 cut(s) 16, 207, 538, 715, 820, 933
Hpy8I GTNNAC 2 cut(s) 64, 618
HpyAV CCTTC 1 cut(s) 1114
HpyCH4III ACNGT 2 cut(s) 401, 924
HpyCH4IV ACGT 2 cut(s) 192, 521
HpyCH4V TGCA 7 cut(s) 49, 241, 281, 418, 428, 467, 566
HpyF10VI GCNNNNNNNGC 5 cut(s) 162, 584, 789, 837, 1010
HpyF3I CTNAG 9 cut(s) 135, 147, 222, 234, 306, 535, 574, 819, 1017
HpySE526I ACGT 2 cut(s) 192, 521
Hsp92II CATG 3 cut(s) 547, 655, 877
HspAI GCGC 1 cut(s) 787
Kpn2I TCCGGA 1 cut(s) 628
Kzo9I GATC 4 cut(s) 83, 660, 710, 1104
LmnI GCTCC 3 cut(s) 461, 703, 780
Lsp1109I GCAGC 6 cut(s) 33, 253, 451, 683, 776, 1022
LweI GCATC 4 cut(s) 290, 415, 914, 1102
MaeI CTAG 3 cut(s) 393, 516, 683
MaeII ACGT 2 cut(s) 192, 521
MaeIII GTNAC 1 cut(s) 70
MalI GATC 4 cut(s) 85, 662, 712, 1106
MbiI CCGCTC 1 cut(s) 609
MboI GATC 4 cut(s) 83, 660, 710, 1104
MfeI CAATTG 1 cut(s) 75
MhlI GDGCHC 3 cut(s) 314, 700, 1130
MlsI TGGCCA 1 cut(s) 548
MluCI AATT 8 cut(s) 27, 75, 510, 621, 678, 761, 774, 957
MluNI TGGCCA 1 cut(s) 548
Mox20I TGGCCA 1 cut(s) 548
Mph1103I ATGCAT 1 cut(s) 430
MroI TCCGGA 1 cut(s) 628
MscI TGGCCA 1 cut(s) 548
MseI TTAA 5 cut(s) 624, 756, 849, 971, 983
MslI CAYNNNNRTG 1 cut(s) 423
Msp20I TGGCCA 1 cut(s) 548
MspA1I CMGCKG 1 cut(s) 674
MspI CCGG 1 cut(s) 629
MunI CAATTG 1 cut(s) 75
MwoI GCNNNNNNNGC 5 cut(s) 162, 584, 789, 837, 1010
NdeII GATC 4 cut(s) 83, 660, 710, 1104
NlaIII CATG 3 cut(s) 547, 655, 877
NlaIV GGNNCC 1 cut(s) 913
NmuCI GTSAC 1 cut(s) 70
NsiI ATGCAT 1 cut(s) 430
NspV TTCGAA 1 cut(s) 322
PaeR7I CTCGAG 1 cut(s) 1115
PaqCI CACCTGC 1 cut(s) 458
PcsI WCGNNNNNNNCGW 1 cut(s) 1113
PfeI GAWTC 2 cut(s) 208, 1041
PkrI GCNGC 6 cut(s) 48, 243, 466, 673, 791, 1012
PshBI ATTAAT 1 cut(s) 624
Psp124BI GAGCTC 1 cut(s) 314
PspN4I GGNNCC 1 cut(s) 913
PspPI GGNCC 2 cut(s) 829, 911
PstI CTGCAG 1 cut(s) 469
PstNI CAGNNNCTG 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 674
RsaI GTAC 2 cut(s) 520, 953
RsaNI GTAC 2 cut(s) 519, 952
RseI CAYNNNNRTG 1 cut(s) 423
SacI GAGCTC 1 cut(s) 314
SaqAI TTAA 5 cut(s) 624, 756, 849, 971, 983
SatI GCNGC 6 cut(s) 47, 242, 465, 672, 790, 1011
Sau3AI GATC 4 cut(s) 83, 660, 710, 1104
Sau96I GGNCC 2 cut(s) 829, 911
SduI GDGCHC 3 cut(s) 314, 700, 1130
SfaNI GCATC 4 cut(s) 290, 415, 914, 1102
SfcI CTRYAG 2 cut(s) 408, 465
Sfr274I CTCGAG 1 cut(s) 1115
SfuI TTCGAA 1 cut(s) 322
SinI GGWCC 1 cut(s) 911
SlaI CTCGAG 1 cut(s) 1115
SmiMI CAYNNNNRTG 1 cut(s) 423
SmlI CTYRAG 2 cut(s) 610, 1115
SmoI CTYRAG 2 cut(s) 610, 1115
Sse9I AATT 8 cut(s) 27, 75, 510, 621, 678, 761, 774, 957
SsiI CCGC 3 cut(s) 496, 607, 887
SspMI CTAG 3 cut(s) 393, 516, 683
SstI GAGCTC 1 cut(s) 314
TaaI ACNGT 2 cut(s) 401, 924
TaiI ACGT 2 cut(s) 195, 524
TaqI TCGA 6 cut(s) 173, 322, 1026, 1044, 1107, 1116
TasI AATT 8 cut(s) 27, 75, 510, 621, 678, 761, 774, 957
TatI WGTACW 1 cut(s) 951
TfiI GAWTC 2 cut(s) 208, 1041
Tru1I TTAA 5 cut(s) 624, 756, 849, 971, 983
Tru9I TTAA 5 cut(s) 624, 756, 849, 971, 983
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 6 cut(s) 46, 241, 464, 671, 789, 1010
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 2 cut(s) 890, 957
VpaK11BI GGWCC 1 cut(s) 911
VspI ATTAAT 1 cut(s) 624
XagI CCTNNNNNAGG 2 cut(s) 536, 705
XapI RAATTY 2 cut(s) 678, 761
XbaI TCTAGA 1 cut(s) 682
XhoI CTCGAG 1 cut(s) 1115
XspI CTAG 3 cut(s) 393, 516, 683
Zsp2I ATGCAT 1 cut(s) 430
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.