pycom07g21370

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0010231
Physical Location & Seq
Reverse (-)
23110701 .. 23112503
1803 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g21370.2

Sequence Viewer

Length: 1062 bp
ATGTCAAAACCCTCGTCTCGGATCTTCCAAGGCCTGCTAAGATTTCACCGCAGCCAAATCTCAAAACCCTCATCTCCGTCTCCGCCTCCGCCTCCGTTGTCCTCCGCCAGGAGGAGCTACCACTCCAGCAATGGGCCTCCTCCCCAATTTCCCTCTCACCCGAAAACAGTCCCCGGAGGCGGGGTTGGCAGATACTCCGGGCCGGGTGTGGGCCTGGGCATGAGGTTTTTCTCTTTCAAGCCGTCGAATTTCAGCAAAATCGATGCTAAGAAGGTGTTTGATAAGCCGCTCTCCGCGGCGTCATCGGCTTTCTCGCGGTACCAGGAGGCCATTGGATTGCAGATTGAGGCGTTCTGGAAGAGGAACAATCTGGTGCTGTTGGGAATTGGGGGAGTGCTGGTGTGTGCTTTGCTATGGAGGATGATGTTTGGGATTGCTAGCACCTTCATTGGACTCTCTGAAGGCATGGCCAAGTATGGCTTCCTCGCCCTTTCTACCGCCATTGTCGCCTTCGCTGGCCTTTACATCCGCTCGAGGTTCACAATCAATCCTGATAAAGTTTATCGAATTGCAATGAGGAAGCTTAATACATCTGCTGGGATTCTCGAGGTTATGGGTGCTCGTCTCTCTGATCGATCAGAGCTAAGAGCTTACGTAATGTCTGGAGGTGGAGTTACTCTGAAGAAGTTCAAGCCAACTTTTAGGAGCAAGCGGTGTTTCCTCATTTTCCCCGTGCGAGGTTCTGAGAGGAAGGGTCTGGTTAATGTTGAAGTAAAGAAGAAACAAGGCCAGTATGATATGAAGCTACTGGCAGTTGACATTCCCATGGCATCAGGACCTGACCAGCGCTTGTTCCTGATTGGCGATGAAGAAGAGTACAAAGTTGGTGGCGGACTAATAGCTGAGCTTAGAGATCCGGTTGTGAAAGCAATGGCTGCAACCGAGGAATTCGATAATCTTGATCAGATTGAAGAAGAGGAGGATGCTGAAAAAGCACTTGAGGAGGCAGAAAAAAAGCATCACGAAGAAATTGAAAAGCTTGAAAAGAGCGGGTCACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

354

Amino Acids

38.91

Weight (kDa)

9.64

Isoelectric Point (pI)

52.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 318
AccB1I GGYRCC 1 cut(s) 318
AccBSI CCGCTC 3 cut(s) 289, 531, 1050
AccII CGCG 2 cut(s) 296, 316
AclWI GGATC 2 cut(s) 29, 908
AcoI YGGCCR 1 cut(s) 468
AcsI RAATTY 2 cut(s) 247, 947
AcuI CTGAAG 2 cut(s) 480, 701
AcyI GRCGYC 1 cut(s) 299
AfaI GTAC 2 cut(s) 320, 878
AfeI AGCGCT 1 cut(s) 848
AfiI CCNNNNNNNGG 8 cut(s) 18, 108, 111, 132, 179, 180, 209, 737
AgsI TTSAA 6 cut(s) 238, 691, 770, 971, 1034, 1043
AjnI CCWGG 3 cut(s) 107, 213, 321
AjuI GAANNNNNNNTTGG 2 cut(s) 464, 496
AluBI AGCT 8 cut(s) 117, 583, 643, 650, 805, 902, 907, 1039
AluI AGCT 8 cut(s) 117, 583, 643, 650, 805, 902, 907, 1039
Alw21I GWGCWC 1 cut(s) 622
Alw26I GTCTC 3 cut(s) 21, 84, 629
AlwI GGATC 2 cut(s) 29, 908
AlwNI CAGNNNCTG 1 cut(s) 839
Ama87I CYCGRG 2 cut(s) 532, 605
Aor51HI AGCGCT 1 cut(s) 848
AoxI GGCC 8 cut(s) 31, 134, 200, 211, 327, 468, 517, 787
ApeKI GCWGC 2 cut(s) 51, 935
ApoI RAATTY 2 cut(s) 247, 947
ArsI GACNNNNNNTTYG 1 cut(s) 31
Asp700I GAANNNNTTC 1 cut(s) 686
Asp718I GGTACC 1 cut(s) 318
AspLEI GCGC 1 cut(s) 849
AspS9I GGNCC 4 cut(s) 134, 200, 211, 836
AsuC2I CCSGG 3 cut(s) 174, 199, 204
AsuHPI GGTGA 2 cut(s) 38, 149
AsuNHI GCTAGC 1 cut(s) 437
AvaI CYCGRG 2 cut(s) 532, 605
AvaII GGWCC 1 cut(s) 836
BalI TGGCCA 1 cut(s) 470
BanI GGYRCC 1 cut(s) 318
Bbv12I GWGCWC 1 cut(s) 622
BbvI GCAGC 2 cut(s) 63, 922
BceAI ACGGC 1 cut(s) 226
BciT130I CCWGG 3 cut(s) 109, 215, 323
BclI TGATCA 1 cut(s) 961
BcnI CCSGG 3 cut(s) 174, 199, 204
BcoDI GTCTC 3 cut(s) 21, 84, 629
BfaI CTAG 1 cut(s) 438
BfoI RGCGCY 1 cut(s) 850
BisI GCNGC 4 cut(s) 52, 287, 297, 936
BlpI GCTNAGC 1 cut(s) 903
BlsI GCNGC 4 cut(s) 53, 288, 298, 937
Bme1390I CCNGG 6 cut(s) 109, 174, 199, 204, 215, 323
Bme18I GGWCC 1 cut(s) 836
BmeT110I CYCGRG 2 cut(s) 532, 605
BmgT120I GGNCC 4 cut(s) 134, 200, 211, 836
BmiI GGNNCC 1 cut(s) 320
BmrFI CCNGG 6 cut(s) 109, 174, 199, 204, 215, 323
BmsI GCATC 4 cut(s) 253, 839, 973, 1027
BmtI GCTAGC 1 cut(s) 441
BpmI CTGGAG 2 cut(s) 109, 684
Bpu1102I GCTNAGC 1 cut(s) 903
BpuEI CTTGAG 1 cut(s) 1019
BpuMI CCSGG 3 cut(s) 174, 199, 204
Bsa29I ATCGAT 2 cut(s) 261, 634
BsaAI YACGTR 1 cut(s) 655
BsaHI GRCGYC 1 cut(s) 299
BsaJI CCNNGG 6 cut(s) 28, 172, 214, 294, 825, 942
BsaWI WCCGGW 1 cut(s) 916
BsaXI ACNNNNNCTCC 6 cut(s) 168, 198, 384, 414, 657, 687
Bsc4I CCNNNNNNNGG 8 cut(s) 18, 108, 111, 132, 179, 180, 209, 737
Bse1I ACTGG 2 cut(s) 790, 813
Bse3DI GCAATG 3 cut(s) 136, 579, 936
BseBI CCWGG 3 cut(s) 109, 215, 323
BseCI ATCGAT 2 cut(s) 261, 634
BseDI CCNNGG 6 cut(s) 28, 172, 214, 294, 825, 942
BseGI GGATG 3 cut(s) 426, 525, 988
BseLI CCNNNNNNNGG 8 cut(s) 18, 108, 111, 132, 179, 180, 209, 737
BseMI GCAATG 3 cut(s) 136, 579, 936
BseMII CTCAG 2 cut(s) 735, 894
BseNI ACTGG 2 cut(s) 790, 813
BseRI GAGGAG 4 cut(s) 127, 129, 992, 1016
BseXI GCAGC 2 cut(s) 63, 922
BseYI CCCAGC 1 cut(s) 596
Bsh1236I CGCG 2 cut(s) 296, 316
BshFI GGCC 8 cut(s) 33, 136, 202, 213, 329, 470, 519, 789
BshNI GGYRCC 1 cut(s) 318
BshVI ATCGAT 2 cut(s) 261, 634
BsiHKAI GWGCWC 1 cut(s) 622
BsiHKCI CYCGRG 2 cut(s) 532, 605
BsiSI CCGG 4 cut(s) 174, 198, 203, 917
BslFI GGGAC 1 cut(s) 155
BslI CCNNNNNNNGG 8 cut(s) 18, 108, 111, 132, 179, 180, 209, 737
BsmAI GTCTC 3 cut(s) 21, 84, 629
BsmBI CGTCTC 3 cut(s) 21, 84, 629
BsmFI GGGAC 1 cut(s) 155
BsnI GGCC 8 cut(s) 33, 136, 202, 213, 329, 470, 519, 789
BsoBI CYCGRG 2 cut(s) 532, 605
Bsp1286I GDGCHC 1 cut(s) 622
Bsp143I GATC 5 cut(s) 21, 631, 635, 913, 961
Bsp1720I GCTNAGC 1 cut(s) 903
Bsp19I CCATGG 1 cut(s) 825
BspANI GGCC 8 cut(s) 33, 136, 202, 213, 329, 470, 519, 789
BspCNI CTCAG 2 cut(s) 736, 895
BspDI ATCGAT 2 cut(s) 261, 634
BspFNI CGCG 2 cut(s) 296, 316
BspLI GGNNCC 1 cut(s) 320
BspOI GCTAGC 1 cut(s) 441
BspPI GGATC 2 cut(s) 29, 908
BspT107I GGYRCC 1 cut(s) 318
BsrBI CCGCTC 3 cut(s) 289, 531, 1050
BsrDI GCAATG 3 cut(s) 136, 579, 936
BsrI ACTGG 2 cut(s) 790, 813
BssECI CCNNGG 6 cut(s) 28, 172, 214, 294, 825, 942
BssMI GATC 5 cut(s) 21, 631, 635, 913, 961
BssNI GRCGYC 1 cut(s) 299
BssT1I CCWWGG 2 cut(s) 28, 825
Bst2UI CCWGG 3 cut(s) 109, 215, 323
Bst4CI ACNGT 2 cut(s) 169, 1059
Bst6I CTCTTC 3 cut(s) 353, 867, 969
BstACI GRCGYC 1 cut(s) 299
BstAPI GCANNNNNTGC 1 cut(s) 935
BstBAI YACGTR 1 cut(s) 655
BstC8I GCNNGC 4 cut(s) 35, 439, 517, 710
BstDEI CTNAG 6 cut(s) 38, 267, 644, 744, 903, 908
BstDSI CCRYGG 2 cut(s) 294, 825
BstENI CCTNNNNNAGG 1 cut(s) 106
BstF5I GGATG 3 cut(s) 426, 525, 988
BstFNI CGCG 2 cut(s) 296, 316
BstH2I RGCGCY 1 cut(s) 850
BstHHI GCGC 1 cut(s) 849
BstKTI GATC 5 cut(s) 24, 634, 638, 916, 964
BstMAI GTCTC 3 cut(s) 21, 84, 629
BstMBI GATC 5 cut(s) 21, 631, 635, 913, 961
BstMWI GCNNNNNNNGC 5 cut(s) 186, 305, 506, 935, 992
BstNI CCWGG 3 cut(s) 109, 215, 323
BstSCI CCNGG 6 cut(s) 107, 172, 197, 202, 213, 321
BstSNI TACGTA 1 cut(s) 655
BstUI CGCG 2 cut(s) 296, 316
BstV1I GCAGC 2 cut(s) 63, 922
BstX2I RGATCY 2 cut(s) 21, 913
BstYI RGATCY 2 cut(s) 21, 913
Bsu15I ATCGAT 2 cut(s) 261, 634
BsuRI GGCC 8 cut(s) 33, 136, 202, 213, 329, 470, 519, 789
BsuTUI ATCGAT 2 cut(s) 261, 634
BtgI CCRYGG 2 cut(s) 294, 825
BtgZI GCGATG 1 cut(s) 879
BtsCI GGATG 3 cut(s) 426, 525, 988
Cac8I GCNNGC 4 cut(s) 35, 439, 517, 710
CaiI CAGNNNCTG 1 cut(s) 839
CfoI GCGC 1 cut(s) 849
Cfr13I GGNCC 4 cut(s) 134, 200, 211, 836
Cfr42I CCGCGG 1 cut(s) 297
ClaI ATCGAT 2 cut(s) 261, 634
CseI GACGC 1 cut(s) 288
Csp6I GTAC 2 cut(s) 319, 877
CspCI CAANNNNNGTGG 2 cut(s) 868, 903
CviAII CATG 3 cut(s) 220, 466, 826
CviQI GTAC 2 cut(s) 319, 877
DdeI CTNAG 6 cut(s) 38, 267, 644, 744, 903, 908
DpnI GATC 5 cut(s) 23, 633, 637, 915, 963
DpnII GATC 5 cut(s) 21, 631, 635, 913, 961
EaeI YGGCCR 1 cut(s) 468
Eam1104I CTCTTC 3 cut(s) 353, 867, 969
EarI CTCTTC 3 cut(s) 353, 867, 969
EciI GGCGGA 4 cut(s) 72, 78, 94, 906
Eco105I TACGTA 1 cut(s) 655
Eco130I CCWWGG 2 cut(s) 28, 825
Eco147I AGGCCT 1 cut(s) 33
Eco47I GGWCC 1 cut(s) 836
Eco47III AGCGCT 1 cut(s) 848
Eco57I CTGAAG 2 cut(s) 480, 701
Eco88I CYCGRG 2 cut(s) 532, 605
EcoNI CCTNNNNNAGG 1 cut(s) 106
EcoO109I RGGNCCY 1 cut(s) 836
EcoRI GAATTC 1 cut(s) 947
EcoRII CCWGG 3 cut(s) 107, 213, 321
EcoT14I CCWWGG 2 cut(s) 28, 825
ErhI CCWWGG 2 cut(s) 28, 825
Esp3I CGTCTC 3 cut(s) 21, 84, 629
FaeI CATG 3 cut(s) 223, 469, 829
FaiI YATR 8 cut(s) 221, 415, 467, 477, 614, 795, 800, 827
FalI AAGNNNNNCTT 2 cut(s) 464, 496
FaqI GGGAC 1 cut(s) 155
FatI CATG 3 cut(s) 219, 465, 825
FauI CCCGC 2 cut(s) 173, 1043
FbaI TGATCA 1 cut(s) 961
Fnu4HI GCNGC 4 cut(s) 52, 287, 297, 936
FokI GGATG 3 cut(s) 433, 512, 995
Fsp4HI GCNGC 4 cut(s) 52, 287, 297, 936
FspBI CTAG 1 cut(s) 438
GlaI GCGC 1 cut(s) 848
GluI GCNGC 4 cut(s) 52, 287, 297, 936
GsaI CCCAGC 1 cut(s) 600
GsuI CTGGAG 2 cut(s) 109, 684
HaeII RGCGCY 1 cut(s) 850
HaeIII GGCC 8 cut(s) 33, 136, 202, 213, 329, 470, 519, 789
HapII CCGG 4 cut(s) 174, 198, 203, 917
HgaI GACGC 1 cut(s) 288
HhaI GCGC 1 cut(s) 849
Hin1I GRCGYC 1 cut(s) 299
Hin1II CATG 3 cut(s) 223, 469, 829
Hin6I GCGC 1 cut(s) 847
HinP1I GCGC 1 cut(s) 847
HincII GTYRAC 1 cut(s) 817
HindII GTYRAC 1 cut(s) 817
HindIII AAGCTT 2 cut(s) 581, 1037
HinfI GANTC 2 cut(s) 453, 601
HpaII CCGG 4 cut(s) 174, 198, 203, 917
HphI GGTGA 2 cut(s) 38, 149
Hpy166II GTNNAC 2 cut(s) 540, 817
Hpy188I TCNGA 7 cut(s) 21, 460, 631, 640, 681, 745, 966
Hpy188III TCNNGA 8 cut(s) 355, 551, 605, 663, 834, 856, 959, 1022
Hpy8I GTNNAC 2 cut(s) 540, 817
Hpy99I CGWCG 1 cut(s) 247
HpyAV CCTTC 5 cut(s) 265, 454, 455, 520, 745
HpyCH4III ACNGT 2 cut(s) 169, 1059
HpyCH4IV ACGT 1 cut(s) 654
HpyCH4V TGCA 3 cut(s) 340, 572, 938
HpyF10VI GCNNNNNNNGC 5 cut(s) 186, 305, 506, 935, 992
HpyF3I CTNAG 6 cut(s) 38, 267, 644, 744, 903, 908
HpySE526I ACGT 1 cut(s) 654
Hsp92I GRCGYC 1 cut(s) 299
Hsp92II CATG 3 cut(s) 223, 469, 829
HspAI GCGC 1 cut(s) 847
KpnI GGTACC 1 cut(s) 322
Ksp22I TGATCA 1 cut(s) 961
KspI CCGCGG 1 cut(s) 297
Kzo9I GATC 5 cut(s) 21, 631, 635, 913, 961
LmnI GCTCC 2 cut(s) 114, 705
Lsp1109I GCAGC 2 cut(s) 63, 922
LweI GCATC 4 cut(s) 253, 839, 973, 1027
MaeI CTAG 1 cut(s) 438
MaeII ACGT 1 cut(s) 654
MaeIII GTNAC 2 cut(s) 673, 1053
MalI GATC 5 cut(s) 23, 633, 637, 915, 963
MbiI CCGCTC 3 cut(s) 289, 531, 1050
MboI GATC 5 cut(s) 21, 631, 635, 913, 961
MboII GAAGA 9 cut(s) 16, 370, 694, 790, 881, 884, 983, 986, 1037
MflI RGATCY 2 cut(s) 21, 913
MhlI GDGCHC 1 cut(s) 622
MlsI TGGCCA 1 cut(s) 470
MluCI AATT 6 cut(s) 146, 247, 384, 567, 947, 1029
MluNI TGGCCA 1 cut(s) 470
MlyI GAGTC 1 cut(s) 447
Mox20I TGGCCA 1 cut(s) 470
MroXI GAANNNNTTC 1 cut(s) 686
MscI TGGCCA 1 cut(s) 470
MseI TTAA 2 cut(s) 585, 762
MslI CAYNNNNRTG 1 cut(s) 824
Msp20I TGGCCA 1 cut(s) 470
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 4 cut(s) 174, 198, 203, 917
MspR9I CCNGG 6 cut(s) 109, 174, 199, 204, 215, 323
MvaI CCWGG 3 cut(s) 109, 215, 323
MvnI CGCG 2 cut(s) 296, 316
MwoI GCNNNNNNNGC 5 cut(s) 186, 305, 506, 935, 992
NciI CCSGG 3 cut(s) 174, 199, 204
NcoI CCATGG 1 cut(s) 825
NdeII GATC 5 cut(s) 21, 631, 635, 913, 961
NheI GCTAGC 1 cut(s) 437
NlaIII CATG 3 cut(s) 223, 469, 829
NlaIV GGNNCC 1 cut(s) 320
NmuCI GTSAC 1 cut(s) 1053
PaeR7I CTCGAG 2 cut(s) 532, 605
PceI AGGCCT 1 cut(s) 33
PdmI GAANNNNTTC 1 cut(s) 686
PfeI GAWTC 1 cut(s) 601
PkrI GCNGC 4 cut(s) 53, 288, 298, 937
PleI GAGTC 1 cut(s) 447
PpsI GAGTC 1 cut(s) 447
Ppu21I YACGTR 1 cut(s) 655
PpuMI RGGWCCY 1 cut(s) 836
Psp5II RGGWCCY 1 cut(s) 836
Psp6I CCWGG 3 cut(s) 107, 213, 321
PspFI CCCAGC 1 cut(s) 596
PspGI CCWGG 3 cut(s) 107, 213, 321
PspN4I GGNNCC 1 cut(s) 320
PspPI GGNCC 4 cut(s) 134, 200, 211, 836
PspPPI RGGWCCY 1 cut(s) 836
PspXI VCTCGAGB 1 cut(s) 532
PstNI CAGNNNCTG 1 cut(s) 839
PsuI RGATCY 2 cut(s) 21, 913
RsaI GTAC 2 cut(s) 320, 878
RsaNI GTAC 2 cut(s) 319, 877
RseI CAYNNNNRTG 1 cut(s) 824
SacII CCGCGG 1 cut(s) 297
SaqAI TTAA 2 cut(s) 585, 762
SatI GCNGC 4 cut(s) 52, 287, 297, 936
Sau3AI GATC 5 cut(s) 21, 631, 635, 913, 961
Sau96I GGNCC 4 cut(s) 134, 200, 211, 836
SchI GAGTC 1 cut(s) 447
ScrFI CCNGG 6 cut(s) 109, 174, 199, 204, 215, 323
SduI GDGCHC 1 cut(s) 622
SfaNI GCATC 4 cut(s) 253, 839, 973, 1027
Sfr274I CTCGAG 2 cut(s) 532, 605
Sfr303I CCGCGG 1 cut(s) 297
SgrBI CCGCGG 1 cut(s) 297
SinI GGWCC 1 cut(s) 836
SlaI CTCGAG 2 cut(s) 532, 605
SmiMI CAYNNNNRTG 1 cut(s) 824
SmlI CTYRAG 3 cut(s) 532, 605, 998
SmoI CTYRAG 3 cut(s) 532, 605, 998
SnaBI TACGTA 1 cut(s) 655
Sse9I AATT 6 cut(s) 146, 247, 384, 567, 947, 1029
SseBI AGGCCT 1 cut(s) 33
SspMI CTAG 1 cut(s) 438
StuI AGGCCT 1 cut(s) 33
StyD4I CCNGG 6 cut(s) 107, 172, 197, 202, 213, 321
StyI CCWWGG 2 cut(s) 28, 825
TaaI ACNGT 2 cut(s) 169, 1059
TaiI ACGT 1 cut(s) 657
TaqI TCGA 7 cut(s) 245, 261, 533, 565, 606, 634, 951
TasI AATT 6 cut(s) 146, 247, 384, 567, 947, 1029
TatI WGTACW 1 cut(s) 876
TauI GCSGC 2 cut(s) 289, 299
TfiI GAWTC 1 cut(s) 601
Tru1I TTAA 2 cut(s) 585, 762
Tru9I TTAA 2 cut(s) 585, 762
TseFI GTSAC 1 cut(s) 1053
TseI GCWGC 2 cut(s) 51, 935
Tsp45I GTSAC 1 cut(s) 1053
TspDTI ATGAA 3 cut(s) 436, 815, 882
TspGWI ACGGA 2 cut(s) 66, 84
VpaK11BI GGWCC 1 cut(s) 836
XagI CCTNNNNNAGG 1 cut(s) 106
XapI RAATTY 2 cut(s) 247, 947
XcmI CCANNNNNNNNNTGG 2 cut(s) 128, 329
XhoI CTCGAG 2 cut(s) 532, 605
XmnI GAANNNNTTC 1 cut(s) 686
XspI CTAG 1 cut(s) 438
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.