Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010231

Physical Location & Seq

Genomic Coordinates Reverse (-)

20923334 .. 20925912

Gene Structure 2579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G56430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1305 bp

ATGGTGAAACCTTCCGATTTCAAAGCAGTTCACAAACTTATTCAATTGCATTACAGTCGAGTCAACCTGTTCACAACGACGGGATGGTCAAAACTCTCAGCTTTGTCTTCTCCGGCTCTTCCTTCAAATGGGGTTTCTCAGCTTCAGCCTAAGTCTGGTTTCCACACCTTCTCGTCGAGACCCACTTCGAAAAACTTTGGCTTATCCCAGATTCTTCCCTCTAATGGGGTTTCTCAGCTTCAACCTAAGACCAGTTTCCACAGCTTTTTGTCGAGACCCACTTCGAAAAATGTGGGATTATCCCAGATTTTACCCAGTCCTAAGCTCGTACCTGGTTTGCAGAATTGTGGTGTAGCCTTGGTTAAGCCCCGTGTTAATATGAACTTTGTATCGGCGTTTAGATTGTTTTCGAGCTCTGGATTTCGAAAAGTTGATGGGAATTTCGCTAGAAAGGTTGTTGACAAGCCAATCAAAGCTGTTAGTTCGACTTTTGCTAGATACCGAATGGCTTTAGGGTTGCACGTTGATGCATTTTGGAAGAAGAATAACCTTTTGGTGTTTGGAGCAGGAGCTGTTTTTGTTTGTATTTTCTTGTGGAGGGTCATGTTTGGAATCGCTAGTACATTCGTTGGCCTCTCTGAGGGAATGGCCAAGTATGGCTTCCTTGCTCTCTCATCTGCCATTGTTGCATTTGCTGGTTTATACCTTCGCGCAAGGTTCACGATCAATCCCGATAAAGTTTACAGGATCACTATGAGGAAGCTCAATACAGCGGCTGATGTTCTTGAAGTTATGGGTGCTCCTCTAGCAGGATCAGATTTGCGTGCTTATGTGATGTCAGGTGGTGGAATAACATTCAAAAAATTCAAGCCAACAATTAGGAACAAGCGTTGCTTCCTCCTATTCCCGGTTCAAGGTTCTGAGCGAAAGGGACTTGTTAGTGTCGAAGTCAAGAAGAAGAAAGGCCAGTATGATATGAAACTACTGGCGGTGGATATTCCGATGGCGTCTGGTCCTGATCAACGCTTATTCCTTATTGGTGATGAAGAAGAGTACAGAGTCGGTGGTGGTTTGATCTCTGAGTTAAGAGATCCTGTGGTAAAAGCAATGGCAGCAACCAAAGAGTTTGATAATCTTGACAGAATTGAAGAGGAAGAAGACGCCGAAAGAGAACTTCAAGAAGCCGAAAGGAAGGAACGTGAAGAGATTGAACTTCAAGAAGCCGAAAGGAAGGAACGTGAAGAATTCGAACTTCAAGAAGCAGAAAGAAAGCAGCGTGAAGAAATCGAGAAGCTTGAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIM21

Protein Analysis

434

Amino Acids

48.53

Weight (kDa)

9.64

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010231)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40800 AT2G40800 AT3G56430
fragaria_vesca	FvH4_7g26230
malus_domestica	MD01G1171000.v1.1 MD07G1237400.v1.1
prunus_persica	Prupe.2G266500_v2.0.a1 Prupe.2G266500_v2.0.a1 Prupe.2G266500_v2.0.a1
pyrus_communis	pycom01g18320 pycom07g21370
rosa_chinensis	RchiOBHm_Chr1g0372681
rosa_laevigata	RLG00000026880
rosa_multiflora	Rmu_ssc0000419.1_g000003
rosa_roxburghii	Rroxscaffold_4G00284760
rosa_rugosa	Rorug01G0373800
rosa_samantha	Rh1AG382300 Rh1BG345700 Rh1CG359100 Rh1DG376900
rosa_wichuraiana	Rw1G033630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	85
AccII	CGCG	1 cut(s)	711
AciI	CCGC	2 cut(s)	773, 989
AclWI	GGATC	3 cut(s)	755, 820, 1085
AcoI	YGGCCR	1 cut(s)	648
AcsI	RAATTY	3 cut(s)	439, 863, 1244
AcuI	CTGAAG	1 cut(s)	128
AcyI	GRCGYC	2 cut(s)	1007, 1161
AfaI	GTAC	3 cut(s)	330, 622, 1055
AfiI	CCNNNNNNNGG	8 cut(s)	128, 155, 224, 225, 640, 809, 907, 914
AjnI	CCWGG	1 cut(s)	331
AjuI	GAANNNNNNNTTGG	4 cut(s)	536, 568, 644, 676
Alw21I	GWGCWC	2 cut(s)	416, 802
Alw26I	GTCTC	2 cut(s)	172, 268
AlwI	GGATC	3 cut(s)	755, 820, 1085
AlwNI	CAGNNNCTG	2 cut(s)	572, 776
AoxI	GGCC	3 cut(s)	631, 648, 964
ApeKI	GCWGC	2 cut(s)	1112, 1273
ApoI	RAATTY	3 cut(s)	439, 863, 1244
AspLEI	GCGC	1 cut(s)	713
AspS9I	GGNCC	1 cut(s)	1013
AsuC2I	CCSGG	1 cut(s)	908
AsuHPI	GGTGA	2 cut(s)	16, 1052
AsuII	TTCGAA	4 cut(s)	188, 284, 424, 1248
AvaII	GGWCC	1 cut(s)	1013
BalI	TGGCCA	1 cut(s)	650
BanII	GRGCYC	1 cut(s)	416
BbsI	GAAGAC	2 cut(s)	99, 1164
Bbv12I	GWGCWC	2 cut(s)	416, 802
BbvI	GCAGC	2 cut(s)	1124, 1285
BccI	CCATC	3 cut(s)	78, 428, 997
BcgI	CGANNNNNNTGC	2 cut(s)	38, 72
BciT130I	CCWGG	1 cut(s)	333
BclI	TGATCA	1 cut(s)	1018
BcnI	CCSGG	1 cut(s)	908
BcoDI	GTCTC	2 cut(s)	172, 268
BfaI	CTAG	4 cut(s)	447, 495, 618, 806
BisI	GCNGC	3 cut(s)	774, 1113, 1274
BlsI	GCNGC	3 cut(s)	775, 1114, 1275
Bme1390I	CCNGG	2 cut(s)	333, 908
Bme18I	GGWCC	1 cut(s)	1013
BmgT120I	GGNCC	1 cut(s)	1013
BmrFI	CCNGG	2 cut(s)	333, 908
BmrI	ACTGGG	1 cut(s)	309
BmsI	GCATC	1 cut(s)	517
BmuI	ACTGGG	1 cut(s)	309
BpiI	GAAGAC	2 cut(s)	99, 1164
Bpu10I	CCTNAGC	1 cut(s)	321
Bpu14I	TTCGAA	4 cut(s)	188, 284, 424, 1248
BpuMI	CCSGG	1 cut(s)	908
BsaHI	GRCGYC	2 cut(s)	1007, 1161
BsaI	GGTCTC	2 cut(s)	172, 268
BsaJI	CCNNGG	1 cut(s)	357
Bsc4I	CCNNNNNNNGG	8 cut(s)	128, 155, 224, 225, 640, 809, 907, 914
Bse1I	ACTGG	4 cut(s)	252, 315, 967, 990
Bse3DI	GCAATG	1 cut(s)	1113
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	1 cut(s)	89
BseLI	CCNNNNNNNGG	8 cut(s)	128, 155, 224, 225, 640, 809, 907, 914
BseMI	GCAATG	1 cut(s)	1113
BseMII	CTCAG	6 cut(s)	111, 152, 248, 630, 912, 1071
BseNI	ACTGG	4 cut(s)	252, 315, 967, 990
BseRI	GAGGAG	1 cut(s)	792
BseXI	GCAGC	2 cut(s)	1124, 1285
Bsh1236I	CGCG	1 cut(s)	711
BshFI	GGCC	3 cut(s)	633, 650, 966
BsiHKAI	GWGCWC	2 cut(s)	416, 802
BsiSI	CCGG	2 cut(s)	113, 908
BslFI	GGGAC	1 cut(s)	945
BslI	CCNNNNNNNGG	8 cut(s)	128, 155, 224, 225, 640, 809, 907, 914
BsmAI	GTCTC	2 cut(s)	172, 268
BsmFI	GGGAC	1 cut(s)	945
BsnI	GGCC	3 cut(s)	633, 650, 966
Bso31I	GGTCTC	2 cut(s)	172, 268
Bsp119I	TTCGAA	4 cut(s)	188, 284, 424, 1248
Bsp1286I	GDGCHC	2 cut(s)	416, 802
Bsp143I	GATC	6 cut(s)	723, 747, 812, 1018, 1074, 1090
BspACI	CCGC	2 cut(s)	773, 989
BspANI	GGCC	3 cut(s)	633, 650, 966
BspCNI	CTCAG	6 cut(s)	110, 151, 247, 631, 913, 1072
BspFNI	CGCG	1 cut(s)	711
BspPI	GGATC	3 cut(s)	755, 820, 1085
BspQI	GCTCTTC	1 cut(s)	123
BspT104I	TTCGAA	4 cut(s)	188, 284, 424, 1248
BspTNI	GGTCTC	2 cut(s)	172, 268
BsrDI	GCAATG	1 cut(s)	1113
BsrI	ACTGG	4 cut(s)	252, 315, 967, 990
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	6 cut(s)	723, 747, 812, 1018, 1074, 1090
BssNI	GRCGYC	2 cut(s)	1007, 1161
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	1 cut(s)	56
Bst6I	CTCTTC	4 cut(s)	123, 1044, 1143, 1197
BstACI	GRCGYC	2 cut(s)	1007, 1161
BstBI	TTCGAA	4 cut(s)	188, 284, 424, 1248
BstC8I	GCNNGC	1 cut(s)	825
BstDEI	CTNAG	9 cut(s)	97, 138, 150, 234, 246, 321, 639, 921, 1080
BstENI	CCTNNNNNAGG	2 cut(s)	638, 807
BstF5I	GGATG	1 cut(s)	89
BstFNI	CGCG	1 cut(s)	711
BstHHI	GCGC	1 cut(s)	713
BstKTI	GATC	6 cut(s)	726, 750, 815, 1021, 1077, 1093
BstMAI	GTCTC	2 cut(s)	172, 268
BstMBI	GATC	6 cut(s)	723, 747, 812, 1018, 1074, 1090
BstMWI	GCNNNNNNNGC	3 cut(s)	686, 806, 1112
BstNI	CCWGG	1 cut(s)	333
BstSCI	CCNGG	2 cut(s)	331, 906
BstUI	CGCG	1 cut(s)	711
BstV1I	GCAGC	2 cut(s)	1124, 1285
BstV2I	GAAGAC	2 cut(s)	99, 1164
BstX2I	RGATCY	1 cut(s)	1090
BstYI	RGATCY	1 cut(s)	1090
BsuRI	GGCC	3 cut(s)	633, 650, 966
BtsCI	GGATG	1 cut(s)	89
Cac8I	GCNNGC	1 cut(s)	825
CaiI	CAGNNNCTG	2 cut(s)	572, 776
CfoI	GCGC	1 cut(s)	713
Cfr13I	GGNCC	1 cut(s)	1013
CseI	GACGC	2 cut(s)	996, 1169
CsiI	ACCWGGT	1 cut(s)	331
Csp6I	GTAC	3 cut(s)	329, 621, 1054
CviAII	CATG	1 cut(s)	604
CviQI	GTAC	3 cut(s)	329, 621, 1054
DdeI	CTNAG	9 cut(s)	97, 138, 150, 234, 246, 321, 639, 921, 1080
DpnI	GATC	6 cut(s)	725, 749, 814, 1020, 1076, 1092
DpnII	GATC	6 cut(s)	723, 747, 812, 1018, 1074, 1090
DrdI	GACNNNNNNGTC	1 cut(s)	85
DseDI	GACNNNNNNGTC	1 cut(s)	85
EaeI	YGGCCR	1 cut(s)	648
Eam1104I	CTCTTC	4 cut(s)	123, 1044, 1143, 1197
EarI	CTCTTC	4 cut(s)	123, 1044, 1143, 1197
Ecl136II	GAGCTC	1 cut(s)	414
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	416
Eco31I	GGTCTC	2 cut(s)	172, 268
Eco47I	GGWCC	1 cut(s)	1013
Eco53kI	GAGCTC	1 cut(s)	414
Eco57I	CTGAAG	1 cut(s)	128
EcoICRI	GAGCTC	1 cut(s)	414
EcoNI	CCTNNNNNAGG	2 cut(s)	638, 807
EcoRI	GAATTC	1 cut(s)	1244
EcoRII	CCWGG	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	357
EcoT22I	ATGCAT	1 cut(s)	532
EcoT38I	GRGCYC	1 cut(s)	416
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	1 cut(s)	607
FaiI	YATR	9 cut(s)	380, 605, 657, 703, 755, 794, 831, 972, 977
FalI	AAGNNNNNCTT	4 cut(s)	644, 676, 878, 910
FaqI	GGGAC	1 cut(s)	945
FatI	CATG	1 cut(s)	603
FbaI	TGATCA	1 cut(s)	1018
Fnu4HI	GCNGC	3 cut(s)	774, 1113, 1274
FokI	GGATG	1 cut(s)	96
FriOI	GRGCYC	1 cut(s)	416
Fsp4HI	GCNGC	3 cut(s)	774, 1113, 1274
FspBI	CTAG	4 cut(s)	447, 495, 618, 806
GlaI	GCGC	1 cut(s)	712
GluI	GCNGC	3 cut(s)	774, 1113, 1274
HaeIII	GGCC	3 cut(s)	633, 650, 966
HapII	CCGG	2 cut(s)	113, 908
HgaI	GACGC	2 cut(s)	996, 1169
HhaI	GCGC	1 cut(s)	713
Hin1I	GRCGYC	2 cut(s)	1007, 1161
Hin1II	CATG	1 cut(s)	607
Hin6I	GCGC	1 cut(s)	711
HinP1I	GCGC	1 cut(s)	711
HincII	GTYRAC	2 cut(s)	64, 460
HindII	GTYRAC	2 cut(s)	64, 460
HindIII	AAGCTT	1 cut(s)	1292
HinfI	GANTC	4 cut(s)	60, 211, 612, 1059
HpaII	CCGG	2 cut(s)	113, 908
HphI	GGTGA	2 cut(s)	16, 1052
Hpy166II	GTNNAC	6 cut(s)	31, 64, 72, 460, 720, 742
Hpy188I	TCNGA	6 cut(s)	16, 640, 817, 922, 1002, 1081
Hpy8I	GTNNAC	6 cut(s)	31, 64, 72, 460, 720, 742
Hpy99I	CGWCG	2 cut(s)	82, 178
HpyAV	CCTTC	6 cut(s)	21, 132, 178, 716, 1186, 1225
HpyCH4III	ACNGT	1 cut(s)	56
HpyCH4IV	ACGT	3 cut(s)	522, 1198, 1237
HpyCH4V	TGCA	5 cut(s)	49, 340, 520, 530, 689
HpyF10VI	GCNNNNNNNGC	3 cut(s)	686, 806, 1112
HpyF3I	CTNAG	9 cut(s)	97, 138, 150, 234, 246, 321, 639, 921, 1080
HpySE526I	ACGT	3 cut(s)	522, 1198, 1237
Hsp92I	GRCGYC	2 cut(s)	1007, 1161
Hsp92II	CATG	1 cut(s)	607
HspAI	GCGC	1 cut(s)	711
Ksp22I	TGATCA	1 cut(s)	1018
Kzo9I	GATC	6 cut(s)	723, 747, 812, 1018, 1074, 1090
LguI	GCTCTTC	1 cut(s)	123
LmnI	GCTCC	3 cut(s)	563, 569, 805
Lsp1109I	GCAGC	2 cut(s)	1124, 1285
LweI	GCATC	1 cut(s)	517
MabI	ACCWGGT	1 cut(s)	331
MaeI	CTAG	4 cut(s)	447, 495, 618, 806
MaeII	ACGT	3 cut(s)	522, 1198, 1237
MalI	GATC	6 cut(s)	725, 749, 814, 1020, 1076, 1092
MboI	GATC	6 cut(s)	723, 747, 812, 1018, 1074, 1090
MfeI	CAATTG	1 cut(s)	44
MflI	RGATCY	1 cut(s)	1090
MhlI	GDGCHC	2 cut(s)	416, 802
MlsI	TGGCCA	1 cut(s)	650
MluCI	AATT	7 cut(s)	44, 343, 439, 863, 876, 1143, 1244
MluNI	TGGCCA	1 cut(s)	650
MlyI	GAGTC	2 cut(s)	69, 1068
MnlI	CCTC	8 cut(s)	229, 591, 634, 644, 750, 813, 908, 1144
Mox20I	TGGCCA	1 cut(s)	650
Mph1103I	ATGCAT	1 cut(s)	532
MscI	TGGCCA	1 cut(s)	650
MseI	TTAA	3 cut(s)	363, 375, 1085
MslI	CAYNNNNRTG	1 cut(s)	525
Msp20I	TGGCCA	1 cut(s)	650
MspA1I	CMGCKG	1 cut(s)	773
MspI	CCGG	2 cut(s)	113, 908
MspR9I	CCNGG	2 cut(s)	333, 908
MunI	CAATTG	1 cut(s)	44
MvaI	CCWGG	1 cut(s)	333
MvnI	CGCG	1 cut(s)	711
MwoI	GCNNNNNNNGC	3 cut(s)	686, 806, 1112
NciI	CCSGG	1 cut(s)	908
NdeII	GATC	6 cut(s)	723, 747, 812, 1018, 1074, 1090
NlaIII	CATG	1 cut(s)	607
NsiI	ATGCAT	1 cut(s)	532
NspV	TTCGAA	4 cut(s)	188, 284, 424, 1248
PciSI	GCTCTTC	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	211, 612
PkrI	GCNGC	3 cut(s)	775, 1114, 1275
PleI	GAGTC	2 cut(s)	68, 1067
PpsI	GAGTC	2 cut(s)	68, 1067
Psp124BI	GAGCTC	1 cut(s)	416
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspPI	GGNCC	1 cut(s)	1013
PstNI	CAGNNNCTG	2 cut(s)	572, 776
PsuI	RGATCY	1 cut(s)	1090
RsaI	GTAC	3 cut(s)	330, 622, 1055
RsaNI	GTAC	3 cut(s)	329, 621, 1054
RseI	CAYNNNNRTG	1 cut(s)	525
SacI	GAGCTC	1 cut(s)	416
SapI	GCTCTTC	1 cut(s)	123
SaqAI	TTAA	3 cut(s)	363, 375, 1085
SatI	GCNGC	3 cut(s)	774, 1113, 1274
Sau3AI	GATC	6 cut(s)	723, 747, 812, 1018, 1074, 1090
Sau96I	GGNCC	1 cut(s)	1013
SchI	GAGTC	2 cut(s)	69, 1068
ScrFI	CCNGG	2 cut(s)	333, 908
SduI	GDGCHC	2 cut(s)	416, 802
SexAI	ACCWGGT	1 cut(s)	331
SfaNI	GCATC	1 cut(s)	517
SfuI	TTCGAA	4 cut(s)	188, 284, 424, 1248
SinI	GGWCC	1 cut(s)	1013
SmiMI	CAYNNNNRTG	1 cut(s)	525
Sse9I	AATT	7 cut(s)	44, 343, 439, 863, 876, 1143, 1244
SsiI	CCGC	2 cut(s)	773, 989
SspMI	CTAG	4 cut(s)	447, 495, 618, 806
SstI	GAGCTC	1 cut(s)	416
StyD4I	CCNGG	2 cut(s)	331, 906
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	1 cut(s)	56
TaiI	ACGT	3 cut(s)	525, 1201, 1240
TasI	AATT	7 cut(s)	44, 343, 439, 863, 876, 1143, 1244
TatI	WGTACW	2 cut(s)	620, 1053
TauI	GCSGC	1 cut(s)	776
TfiI	GAWTC	2 cut(s)	211, 612
Tru1I	TTAA	3 cut(s)	363, 375, 1085
Tru9I	TTAA	3 cut(s)	363, 375, 1085
TseI	GCWGC	2 cut(s)	1112, 1273
TspDTI	ATGAA	3 cut(s)	395, 992, 1059
VpaK11BI	GGWCC	1 cut(s)	1013
XagI	CCTNNNNNAGG	2 cut(s)	638, 807
XapI	RAATTY	3 cut(s)	439, 863, 1244
XspI	CTAG	4 cut(s)	447, 495, 618, 806
Zsp2I	ATGCAT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.